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Date
  • 토요일 오전 10:30

    • 발표자
  • 박유미, 안세환, 김효정, 권호식, 이우승, 최선, 김형준, 윤선민, 임영균, 유경훈, 김기태, 김주연, 서명의, 유승원, 채정환, 한봄, (정문경), 국수경, (민유정), 부은경, 김재환

    • 팀:   발표자:    제목/키워드:    날짜:   

    2019-11:
    02 김기태  
    02 김주연  

    2019-10:
    05 안세환 Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures.    
    05 권호식 Exome-wide assessment of the functional impact and pathogenicity of multinucleotide mutations    
    12 이우승 How good are pathogenicity predictors in detecting benign variants?    
    12 최선 BioBERT: a pre-trained biomedical language representation model for biomedical text mining    
    19 김형준 Tamper Resistant Mobile Health Using Blockchain Technology    
    19 윤선민 Genotype-based Treatment With Thiopurine Reduces Incidence of Myelosuppression in Patients With Inflammatory Bowel Diseases    
    26 임영균  
    26 유경훈  

    2019-09:
    07 한봄 Understanding HLA associations from SNP summary association statistics    
    07 국수경 Immune profiles in primary squamous cell carcinoma of the head and neck    
    14 ...  
    14 ...  
    21 김재환 Multi-Gene Panel Testing of 23,179 Individuals for Hereditary Cancer Risk Identifies Pathogenic Variant Carriers Missed by Current Genetic Testing Guidelines    
    21 박유미 Massive parallel variant characterization identifies NUDT15 alleles associated with thiopurine toxicity    
    28 부은경 Genetic meta-analysis of diagnosed Alzheimer’s disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing    
    28 김효정 The Coriell personalized medicine collaborative pharmacogenomics appraisal, evidence scoring and interpretation system    

    2019-08:
    03 임영균 RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues    
    03 윤선민 Diagnosis of genetic diseases in seriously ill children by rapid whole-genome sequencing and automated phenotyping and interpretation    
    10 김기태 Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome    
    10 유경훈 Impact of pharmacogenomics on clinical outcomes in major depressive disorder in the GUIDED trial: A large, patient- and rater-blinded, randomized, controlled study    
    17 이우승 A longtudinal big data approach for precision health    
    17 민병주 Noncoding CGG repeat expansions in neuronal intranuclear inclusion disease, oculopharyngodistal myopathy and an overlapping disease    
    24 김주연 Characterizing pharmacogenomic-guided medication use with a clinical data repository    
    24 서명의 Paralog studies augment gene discovery:DDX and DHX genes    
    31 유승원 Drug combination sensitivity scoring facilitates the discovery of synergistic and efficacious drug combinations in cancer    
    31 채정환 PPM1D Mutations Drive Clonal Hematopoiesis in Response to Cytotoxic Chemotherapy    

    2019-07:
    06 민유정 TogoGenome/TogoStanza: modularized Semantic Web genome database    
    06 부은경 Expanding Parkinson’s disease genetics: novel risk loci, genomic context, causal insights and heritable risk    
    13 김재환 A Model Information Management Plan for Molecular Pathology Sequence Data Using Standards    
    13 박유미 Evolutionary coupling analysis identifies the impact ofdisease-associated variants at less-conserved sites    
    20 안세환 L1000 Viewer: A Search Engine and Web Interface for the LINCS Data Repository    
    20 권호식 Pathogenic Germline Variants in 10,389 Adult Cancers    
    27 김효정 A Pharmacogenomics Clinical Decision Support Service Based on FHIR and CDS Hooks     
    27 최선 Cardiologist-level arrhythmia detection and classification in ambulatory electrocardiograms using a deep neural network    

    2019-06:
    01 민유정 .Genomic Common Data Model for Seamless Interoperation of Biomedical Data in Clinical Practice: Retrospective Study    
    01 유경훈 Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program    
    08 김주연 Network, transcriptomic and genomic features differentiate genes relevant for drug response    
    08 민병주 Biallelic expansion of an intronic repeat in RFC1 is a common cause of late-onset ataxia    
    15 김기태 Conditional and interaction gene-set analysis reveals novel functional pathways for blood pressure    
    15 유승원 Systematic discovery of germline cancer predisposition genes through the identification of somatic second hits    
    22 서명의 Length of uninterrupted CAG, independent of polyglutamine size, results in increased somatic instability, hastening onset of Huntington Disease    
    22 채정환 Genomic and Transcriptomic Landscape of Triple-Negative Breast Cancers: Subtypes and Treatment Strategies    
    29 한봄 Immune diversity sheds light on missing variation in worldwide genetic diversity panels    
    29 국수경 Tracing Oncogene Rearrangements in the Mutational History of Lung Adenocarcinoma.    

    2019-05:
    04 김재환 Recommendations for interpreting the loss of function PVS1 ACMG/AMP variant criterion    
    04 부은경 Exome sequencing identifies germline variants in DIS3 in familial multiple myeloma    
    11 안세환 New drug candidates for treatment of atypical meningiomas: An integrated approach using gene expression signatures for drug repurposing    
    11 김효정 Pharmacogenomic clinical decision support design and multi-site process outcomes analysis in the eMERGE Network    
    18 권호식 The germline genetic component of drug sensitivity in cancer cell lines    
    18 이우승 Somatic_Mutations_increase_Hepatic_Clonal_Fitness_and_Regeneration_in_Chronic_Liver_Disease    
    25 임영균 Prioritization of cancer therapeutic targets using CRISPR-Cas9 screens    
    25 윤선민 Interpreting the clinical significance of combined variants in multiple recessive disease genes: systematic investigation of Joubert syndrome yields little support for oligogenicity.    

    2019-04:
    06 채정환 A joint study of whole exome sequencing and structural MRI analysis in major depressive disorder    
    06 서명의 Variants of unknown significance in genes associated with heritable thoracic aortic disease can be low penetrant ‘‘risk variants’’    
    13 김주연 Analysis of comprehensive pharmacogenomic profiling to impact in-hospital prescribing    
    13 유승원 Discovering the ‘Dark matters’ in expression data of miRNA based on the miRNA-mRNA and miRNA-lncRNA networks    
    20 한봄 Cross-ethnicity tagging SNPs for HLA alleles associated with adverse drug reaction    
    20 국수경 Whole-exome sequencing and clinical interpretation of FFPE tumor samples to guide precision cancer medicine    
    27 최선 Using RNN to predict heart failure    
    27 박유미 Whole exome sequencing and characterization of coding variation in 49,960 individuals in the UK Biobank    

    2019-03:
    02 박유미 Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder    
    02 김효정 Toward a normalized clinical drug knowledge base in China—applying the RxNorm model to Chinese clinical drugs    
    09 권호식 Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions    
    09 이우승 Re-identification of individuals in genomic data-sharing beacons via allele inference    
    16 최선 Risk prediction for chronic kidney disease progression using heterogeneous electronic health record data and time series analysis    
    16 윤선민 Rapid and accurate interpretation of clinical exomes using Phenoxome: a computational phenotype-driven approach    
    23 임영균 Widespread Selection for Oncogenic Mutant Allele Imbalance in Cancer    
    23 유경훈 Improved Pathogenic Variant Localization via a Hierarchical Model of Sub-regional Intolerance    
    30 김기태 Pathway Based Analysis of Mutation Data Is Efficient for Scoring Target Cancer Drugs    
    30 민병주 An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders    

    2019-02:
    02 김주연 Projected impact of a multigene pharmacogenetic test to optimize medication prescribing in cardiovascular patients    
    02 서명의 The malaria-protective human glycophorin structural variant DUP4 shows somatic mosaicism and association with hemoglobin levels    
    09 유승원 Predicting protein-protein interactions using high-quality non-interacting pairs 
    09 정문경  
    16 정문경 Patients Know Best: Qualitative Study on How Families Use Patient-Controlled Personal Health Records    
    16 유경훈 Burden Testing of Rare Variants Identified through Exome Sequencing via Publicly Available Control Data    
    23 채정환 Nonsynonymous Variants in PAX4 and GLP1R Are Associated With Type 2 Diabetes in an East Asian Population    
    23 안세환 GenIO: a phenotype-genotype analysis web server for clinical genomics of rare diseases    

    2019-01:
    05 권호식 ClinPred: Prediction Tool to Identify Disease-Relevant Nonsynonymous Single-Nucleotide Variants    
    05 이우승 Forward and reverse mutations in stages of cancer development    
    12 최선 Active Disease Surveillance in an Electronic Health Database Using a Common Data Model Based Tool     
    12 윤선민 High Yield of Pathogenic Germline Mutations Causative or Likely Causative of the Cancer Phenotype in Selected Children with Cancer    
    19 임영균 A map of constrained coding regions in the human genome    
    19 한봄 Functional annotation of genomic variants in studies of late-onset Alzheimer    
    26 김기태 Efficiient Parameter Estimation Enables the Prediction of Drug Response Using a Mechanistic Pan-Cancer Pathway Model    
    26 민병주 Genetic Determinants and Prediction of Antibiotic Resistance Phenotypes in Helicobacter pylori    

    2018-12:
    01 서명의 Homozygous mutations in WEE2 cause fertilization failure and female infertility     
    01 유승원 In silico profiling of systemic effects of drugs to predict unexpected interactions    
    08 채정환 Germline Genetic IKZF1 Variation and Predisposition to Childhood Acute Lymphoblastic Leukemia    
    08 한봄 Evaluating Variant Calling Tools for Non-Matched Next-Generation Sequencing Data.    
    15 정문경 Advancing Models and Theories for Digital Behavior Change Interventions    
    15 이정훈 Pathway-Based Drug Repositioning for Cancers: Computational Prediction and Experimental Validation    
    22 박유미 Estimating the selective effects of heterozygous protein-truncating variants from human exome data    
    22 안세환 PopViz: a webserver for visualizing minor allele frequencies and damage prediction scores of human genetic variations    
    29 김효정 Accuracy of an automated knowledge base for identifying drug adverse reactions    
    29 권호식 ClinPred: Prediction Tool to Identify Disease-Relevant Nonsynonymous Single-Nucleotide Variants    

    2018-11:
    03 임영균 Network Propagation Predicts Drug Synergy in Cancers    
    03 이우승 The chromatin accessibility landscape of primary human cancers    
    10 최선 MedEx: a medication information extraction system for clinical narratives    
    10 권호식 Intersect-then-combine approach: improving the performance of somatic variant calling in whole exome sequencing data using multiple aligners and callers    
    17 민병주 Application of next-generation sequencing to characterize novel mutations in clarithromycin-susceptible Helicobacter pylori strains with A2143G of 23S rRNA gene    
    17 김주연 Whole genome sequencing identifies high-impact variants in well-known pharmacogenomic genes    
    24 유경훈 An optimized prediction framework to assess the functional impact of pharmacogenetic variants    
    24 김기태 Pathway-structured predictive modeling for multi-level drug response in multiple myeloma    

    2018-10:
    06 유승원 Mapping biological process relationships and disease    
    06 채정환 ANGPTL3 Deficiency and Protection Against Coronary Artery Disease    
    13 박유미 Trans effects on gene expression can drive omnigenic inheritance    
    13 정문경 THE IMPACT OF INTERPERSONAL CLOSENESS CUES IN TEXT-BASED HEALTHCARE CHATBOTS ON ATTACHMENT BOND AND THE DESIRE TO CONTINUE INTERACTING: AN EXPERIMENTAL DESIGN      
    20 이정훈 Synthetic Lethality-based Identifcation of Targets for Anticancer Drugs in the Human Signaling Network    
    20 한봄 MediSyn: uncertainty-aware visualization of multiple biomedical datasets to support drug treatment selection    
    27 안세환 VarCards: an integrated genetic and clinical database for coding variants in the human genome    
    27 김효정 Towards Implementation of OMOP in a German University Hospital Consortium    

    2018-09:
    01 권호식 The landscape of genomic alterations across childhood cancers    
    01 이우승 Evaluation of in silico algorithms for use with ACMG/AMP clinical variant interpretation guidelines    
    08 임영균 Tumor Mutational Burden and Efficacy of Nivolumab Monotherapy and in Combination with Ipilimumab in Small-Cell Lung Cancer    
    08 김기태 Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines    
    15 유경훈 Covariate selection for association screening in multiphenotype genetic studies    
    15 민병주 Risks and Recommendations in Prenatally Detected De Novo Balanced Chromosomal Rearrangements from Assessment of Long-Term Outcomes    
    22 ... 추석    
    22 ... 추석    
    29 김주연 Quantifying the impact of rare and ultra-rare coding variation across the phenotypic spectrum    
    29 서명의 A dominantly inherited 5` UTR variant causing methylation-associated silencing of BRCA1 as a cause of breast and ovarian cancer     

    2018-08:
    04 정문경 Histidine catabolism is a major determinant of methotrexate sensitivity      
    04 한봄 Applications of pharmacogenomics in regulatory science: a product life cycle review    
    11 유승원 In silico Pathway Activation Network Decomposition Analysis (iPANDA) as a method for biomarker development    
    11 이정훈 Classifying tumors by supervised network propagation    
    18 박유미 Loose ends: almost one in five human genes still have unresolved coding status    
    18 이수현 Analysis of safety reporting requirements during medical device clinical trials in Japan.    
    25 안세환 Gene Graphics: a genomic neighborhood data visualization web application    
    25 김효정 Genomic decision support needs in pediatric primary care    

    2018-07:
    07 김효정 Principles and Recommendations for Standardizing the Use of the Next-Generation Sequencing Variant File in Clinical Settings    
    07 임영균 Systematic analysis of complex genetic interactions    
    14 안세환 Genome U-Plot:a whole genome visualization    
    14 김주연 Impact of germline and somatic missense variations on drug binding sites    
    21 김기태 Relationship between Deleterious Variation, Genomic Autozygosity, and Disease Risk: Insights from The 1000 Genomes Project    
    21 민병주 Germline de novo mutation clusters arise during oocyte aging in genomic regions with high double-strand-break incidence    
    28 서명의 Functional assays are essential for interpretation of missense variants associated with variable expressivity    
    28 채정환 Association Between SLC16A5 Genetic Variation and Cisplatin Induced Ototoxic Effects in Adult Patients With Testicular Cancer    

    2018-06:
    02 한봄 Cost-effectiveness of HLA-DQB1/HLA-B pharmacogenetic-guided treatment and blood monitoring in US patients taking clozapine    
    02 정문경 First-Stage Development and Validation of a Web-Based Automated Dietary Modeling Tool: Using Constraint Optimization Techniques to Streamline Food Group and Macronutrient Focused Dietary Prescriptions    
    09 채정환 methylation of l1re1, rarb, and rassf1 function as possible biomarkers for the differential diagnosis of lung cancer.    
    09 박유미 Whole Exome Sequencing in 20,197 Persons for Rare Variants in Alzheimer Disease    
    16 이정훈 Individual specific edge-network analysis for disease prediction    
    16 이수현 Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data    
    23 유경훈 Identification of Misclassified ClinVar Variants via Disease Population Prevalence    
    23 김형준 Secure and Trustable Electronic Medical Records Sharing using Blockchain    
    30 권호식 Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes    
    30 이우승 Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome    

    2018-05:
    05 ... 공휴일 
    05 ... 공휴일 
    12 유경훈 Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression    
    12 민병주 Expansions of intronic TTTCA and TTTTA repeats in benign adult familial myoclonic epilepsy    
    19 서명의 Antisense therapy for a common corneal dystrophy ameliorates TCF4 repeat expansion-mediated toxicity    
    19 박지연 Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation    
    26 김주연 Patient-Centered Precision Health In A Learning Health Care System: Geisinger’s Genomic Medicine Experience    
    26 유승원 Systematic identification of feature combinations for predicting drug response with Bayesian multi-view task linear regression    

    2018-04:
    07 윤선민 Lessons learned from additional research analyses of unsolved clinical exome cases    
    07 권호식 Analysis of a gene panel for targeted sequencing of colorectal cancer samples    
    14 이우승 Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls    
    14 김형준 MedRec Using Blockchain for Medical Data Access and Permission Management    
    21 이수현 Medication class enrichment analysis: a novel algorithm to analyze multiple pharmacologic exposures simultaneously using electronic health record data    
    21 임영균 Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics     
    28 김기태 An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics    
    28 김민정 Pan-cancer analysis of bi-allelic alterations in homologous recombination DNA repair genes    

    2018-03:
    03 서명의 Disease model discovery from 3,328 gene knockouts by The International Mouse Phenotyping Consortium    
    03 박지연 Identification of protein features encoded by alternative exons using Exon Ontology    
    10 유승원 A framework for the detection of de novo mutations in family-based sequencing data    
    10 채정환 Deep learning improves prediction of CRISPR-Cpf1 guide RNA activity    
    17 한봄 Evaluating somatic tumor mutation detection without matched normal samples    
    17 정문경 Genomic Landscape of Cell-Free DNA in Patients with Colorectal Cancer      
    24 이정훈 Link synthetic lethality to drug sensitivity of cancer cells    
    24 박유미 The Medical Genome Reference Bank: a whole genome data resource of 4,000 healthy elderly individuals. Rationale and cohort design    
    31 김효정 Drug knowledge bases and their applications in biomedical informatics research    
    31 안세환 Visualization portal for genetic variation(VizGVar): a tool for interactive visualization of SNPs and somatic mutations in exons, genes and protein domains    

    2018-02:
    03 김형준 Building a semantic web based metadata repository for facilitating detailed clinical modeling in cacer genome studies    
    03 김기태 A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles    
    10 류영재 Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets    
    10 민병주 Reccurrent F8 Intronic Deletion Found in Mild Hemophilia A Causes Alu Exonization    
    17 ... 공휴일 
    17 ... 공휴일 
    24 김민정 Integrative analysis of genome-wide gene copy number changes and gene expression in non-small cell lung cancer    
    24 김주연 Multisite Investigation of Outcomes With Implementation of CYP2C19 Genotype-Guided Antiplatelet Therapy After Percutaneous Coronary Intervention    

    2018-01:
    06 이정훈 Hybrid Approach of Relation Network and Localized Graph Convolutional Filtering for Breast Cancer Subtype Classification    
    06 박유미 Pharmacogenomics of GPCR Drug Targets    
    13 김효정 A Realism-Based View on Counts in OMOP\'s Common Data Model    
    13 이우승 Network dynamics-based cancer panel stratification for systemic prediction of anticancer drug response    
    20 권호식 Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma    
    20 유경훈 Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes    
    27 윤선민 Using ALoFT to determine the impact of putative loss-of-function variants in protein-coding genes    
    27 임영균 Combination Cancer Therapy Can Confer Benefit via Patient-to-Patient Variability without Drug Additivity or Synergy    

    2017-12:
    02 박호경 Risk factors of isoniazid-induced hepatotoxicity in Tunisian tuberculosis patients    
    02 김기태 Discovering novel pharmacogenomic biomarkers by imputing drug response in cancer patients from large genomics studies    
    09 류영재 Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension    
    09 민병주 Exonic Mosaic Mutations Contribute Risk for Autism Spectrum Disorder    
    16 김민정 Changes in gene expression variability reveal a stable synthetic lethal interaction network in BRCA2- ovarian cancers    
    16 김주연 Pharmacogenomics-Based Point-of-Care Clinical Decision Support Significantly Alters Drug Prescribing    
    23 서명의 PGBD5 promotes site-specific oncogenic mutations in human tumors    
    23 박지연 Annotation-free quantification of RNA splicing using LeafCutter    
    30 ...     
    30 ...     

    2017-11:
    04 박유미 Variant Interpretation: Functional Assays to the Rescue    
    04 김효정 Reverse translation of adverse event reports paves the way for de-risking preclinical off-targets    
    11 윤선민 Genetic variation in human drug-related genes     
    11 이우승 Overexpressed Somatic Alleles are Enriched in Functional Elements in Breast Cancer    
    18 김형준 Comparing the Performance of NoSQL Approaches for Managing Archetype Based Electronic Health Record Data    
    18 권호식 Multiregion Whole-Exome Sequencing Uncovers the Genetic Evolution and Mutational Heterogeneity of Early-Stage Metastatic Melanoma    
    25 임영균 Comprehensive Analysis of Hypermutation in Human Cancer    
    25 유경훈 A method to decipher pleiotropy by detecting underlying heterogeneity driven by hidden subgroups applied to autoimmune and neuropsychiatric diseases    

    2017-10:
    07 ... 연휴 
    07 ... 연휴 
    14 박호경 Sparse whole genome sequencing identifies two loci for major depressive disorder    
    14 김주연 Multidisciplinary model to implement pharmacogenomics at the point of care    
    21 서명의 Loss-of-function and gain-of-function mutations in KCNQ5 cause intellectual disability or epileptic encephalopathy    
    21 박지연 Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer    
    28 서희원 Profiling and leveraging relatedness in a precision medicine cohort of 92,455 exomes    
    28 이정훈 MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays    

    2017-09:
    02 김형준 Opening the Duke electronic health record to apps: ImplementingSMART on FHIR    
    02 윤선민 Common sequence variants affect molecular function more than rare variants?    
    09 임영균 Integrative clinical genomics of metastatic cancer    
    09 유경훈 The druggable genome and support for target identification and validation in drug development    
    16 김민정 Identification of prognostic genes through expression differentiation during metastatic process in lung adenocarcinoma    
    16 김기태 Using Clinical Characteristics to Identify Which Patients With Major Depressive Disorder Have a Higher Genetic Load for Three Psychiatric Disorders    
    23 류영재 Global profiling of alternative RNA splicing events provides insights into molecular differences between various types of HCC    
    23 민병주 Evaluation of ACMG-Guideline-Based Variant Classification of Cancer Susceptibility and Non-Cancer- Associated Genes in Families Affected by Breast Cancer    
    30 ... TBC 
    30 ... TBC 

    2017-08:
    05 서희원 Genetic diagnosis of Mendelian disorders via RNA sequencing    
    05 박지연 RNA splicing is a primary link between genetic variation and disease    
    12 서명의 Evaluating the clinical validity of gene-disease associations an evidence-based framework developed by the clinical genome resource    
    12 이정훈 Measuring intratumor heterogeneity by network entropy using RNA-seq data    
    19 이우승 A Zoom Focus algorithm to locate the optimal testing region for rare variant association tests    
    19 김효정 Signal Detection of Imipenem Compared to Other Drugs from Korea Adverse Event Reporting System Database    
    26 박유미 Gene family information facilitates variant interpretation and identification of disease associated genes    
    26 권호식 Burden of Nonsynonymous Mutations among TCGA Cancers and Candidate Immune Checkpoint Inhibitor Responses    

    2017-07:
    01 박유미 An Expanded View of Complex Traits: From Polygenic to Omnigenic    
    01 김기태 AACR Project GENIE: Powering Precision Medicine Through An International Consortium    
    08 유경훈 Semantic prioritization of novel causative genomic variants    
    08 임영균 A global genetic interaction network maps a wiring diagram of cellular function    
    15 윤선민 Using large sequencing data sets to refine intragenic disease regions and prioritize clinical variant interpretation    
    15 김형준 Automated integration of continuous glucose monitor data in the electronic health record using consumer technology    
    22 김주연 Preemptive Pharmacogenomic Testing for Precision Medicine: A Comprehensive Analysis of Five Actionable Pharmacogenomic Genes Using Next-Generation DNA Sequencing and a Customized CYP2D6 Genotyping Cas    
    22 박호경 Meta-analysis of effects of ABCB1 polymorphisms on clopidogrel response among patients with coronary artery disease    
    29 민병주 Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility    
    29 류영재 Disease variants alter transcription factor levels and methylation of their binding sites    

    2017-06:
    03 박지연 Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq    
    03 송유림 A comprehensive analysis of rare genetic variation in amyotrophic lateral sclerosis in the UK    
    10 김혜현 Back on Track: A Mobile App Observational Study Using Apple ResearchKit Framework    
    10 서희원 Pharmacogenomic variants have larger effect sizes than genetic variants associated with other dichotomous complex traits.    
    17 이정훈 Supporting precision medicine by data mining across multi-disciplines: an integrative approach for generating comprehensive linkages between single nucleotide variants (SNVs) and drug-binding sites    
    17 이우승 Mutational landscape of matastatic cancer revealed from prospective clinical sequencing of 10,000 patients    
    24 박지혜 Electronic health record phenotype in subjects with genetic variants associated with arrhythmogenic right ventricular cardiomyopathy: a study of 30,716 subjects with exome sequencing     
    24 김효정 The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight    

    2017-05:
    06 unknown  
    06 unknown  
    13 박호경 Genetic Polymorphisms Contribute to the Individual Variations of Imatinib Plasma Levels and ADR in Chinese GIST    
    13 김기태 Pathway-Structured Predictive Model for Cancer Survival Prediction: A Two-Stage Approach    
    20 류영재 RNA sequence context effects measured in vitro predict in vivo protein binding and regulation    
    20 민병주 Tumor-suppressor genes that escape from X-inactivation contribute to cancer sex bias    
    27 김주연 Creating a scalable clinical pharmacogenomics service with automated interpretation and medical record result integration-experience from a pediatric tertiary care facility    
    27 서명의 A common variant at the 14q32 endometrial cancer risk locus activates AKT1 through YY1 binding    

    2017-04:
    01 김혜현 Successful weight reduction and maintenance by using a smartphone application in those with overweight and obesity    
    01 이정훈 Network perturbation by recurrent regulatory variants in cancer    
    08 서희원 Rare and low-frequency coding variants alter human adult height    
    08 이계화 A systematic approach to the reporting of medically relevant findings from whole genome sequencing    
    15 김효정 The other side of the coin: Harm due to the non-use of health-related data    
    15 이우승 Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data    
    22 윤선민 SPATIAL: A System-level PAThway Impact AnaLysis approach    
    22 김형준 C3-PRO. Connecting ResearchKit to the Health System Using i2b2 and FHIR    
    29 유경훈 Whole-genome sequencing identifies common-to-rare variants associated with human blood metabolites    
    29 임영균 Reassessment of Genomic Sequence Variation to Harmonize Interpretation for Personalized Medicine    

    2017-03:
    04 류영재 WT U2AF1 Antagonizes the Splicing Program Characteristic of U2AF1 mutant tumors    
    04 민병주 InterVar: Clinical Interpretation of Genetic Variants by the 2015 ACMG-AMP Guidelines    
    11 김주연 Clinical impact of pharmacogenetic profiling with a clinical decision support tool in polypharmacy home health patients: A prospective pilot randomized controlled trial    
    11 서명의 Mutations in three genes encoding proteins involved in hair shaft formation cause uncombable hair syndrome    
    18 박지연 Comprehensive analyses of tumor immunity: implications for cancer immunotherapy    
    18 송유림 Mutation Detection of Fibroblast Growth Factor Receptor 3 for Infiltrative Hepatocellular Carcinoma by Whole-Exome Sequencing    
    25 박지혜 Prospective participant selection and ranking to maximize actionable pharmacogenetic variants and discovery in the eMERGE Network    
    25 박유미 Characterization of ADME gene variation in 21 populations by exome sequencing    

    2017-02:
    04 이수현 Evaluating common data models for use with a longitudinal community registry    
    04 이우승 Massive interstitial copy-neutral loss of heterozygosity as evidence for cancer being a disease of the DNA-damage response    
    11 김효정 Patients, care partners, and shared access to the patient portal: online practices at an integrated health system    
    11 김형준 Metadata Repository for Improved Data Sharing and Reuse Based on HL7 FHIR    
    18 윤선민 Controllability analysis of the directed human protein interaction network identifies disease genes and drug targets    
    18 임영균 Somatic Mutation Patterns in Hemizygous Genomic Regions Unveil Purifying Selection during Tumor Evolution    
    25 김기태 Pathway-based gene signatures predicting clinical outcome of lung adenocarcinoma    
    25 박호경 Circular RNAs and their associations with breast cancer subtypes    

    2017-01:
    07 김혜현 Opening the Duke electronic health record to apps: Implementing SMART on FHIR    
    07 이계화 Comparison of Approaches for Heart Failure Case Identification From Electronic Health Record Data    
    14 박유미 The intolerance to functional genetic variation of protein domains predicts the localization of pathogenic mutations within genes    
    14 이정훈 Molecular analysis of urothelial cancer cell lines for modeling tumor biology and drug response    
    21 서희원 Distribution and clinical impact of functional variants in 50,726 whole-exome sequences from the DiscovEHR study    
    21 홍주영 A novel algorithm for analyzing drug-drug interactions from MEDLINE literature    

    2016-12:
    03 이수현 Electronic Health Record Based Algorithm to Identify Patients with Autism Spectrum Disorder    
    03 류영재 Cancer associated SF3B1 mutatnts recognize otherwise inaccessible cryptic 3 splice sites within RNA secondary structures    
    10 민병주 Point Mutations in Exon 1B of APC Reveal Gastric Adenocarcinoma and Proximal Polyposis of the Stomach as a Familial Adenomatous Polyposis Variant    
    10 김주연 Identification of causal genes for complex traits    
    17 서명의 Sequencing the GRHL3 coding region reveals rare truncating mutations and a common susceptibility variant for nonsyndromic cleft palate    
    17 박지연 The prognostic potential of alternative transcript isoforms across human tumors     
    24 송유림 Increased burden of deleterious variants in essential genes in autism spectrum disorder    
    24 박지혜 The global spectrum of protein-coding pharmacogenomic diversity    
    31 전체 리트릿 
    31 전체 리트릿 

    2016-11:
    05 김효정 Clinical reasoning in the context of active decision support during medication prescribing     
    05 이계화 Development of clinical decision support alerts for pharmacogenomic incidental findings from exome sequencing     
    12 이우승 Genome-wide significance testing of variation from single case exomes    
    12 윤선민 A pathway-centric approach to rare variant association analysis    
    19 김형준 SMART on FHIR implemented over i2b2    
    19 박호경 Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study    
    26 임영균 Exploring genetic suppression interactions on a global scale    
    26 김기태 A new correlation clustering method for cancer mutation analysis    

    2016-10:
    01 박지연 Direct Transcriptional Consequences of Somatic Mutation in Breast Cancer     
    01 송유림 Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer    
    08 박지혜 REVEL: an Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants    
    08 홍주영 How Informative Are Drug-Drug Interactions of Gene-Drug Interactions?    
    22 서희원 Genetic Variation Among 82 Pharmacogenes: The PGRNseq Data From the eMERGE Network     
    22 김혜현 Detecting Unplanned Care From Clinician Notes in Electronic Health Records    
    29 이정훈 ENCAPP: elastic-net-based prognosis prediction and biomarker discovery for human cancers    
    29 박유미 The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes     

    2016-09:
    03 임영균 A Network of Conserved Synthetic Lethal Interactions for Exploration of Precision Cancer Therapy    
    03 김형준 ODMedit_ uniform semantic annotation for data integration in medicine based on a public metadata repository    
    10 윤선민 Analysis of protein-coding genetic variation in 60,706 humans    
    10 민병주 Determinants of Power in Gene-Based Burden Testing for Monogenic Disorders    
    24 김주연 The effect of pharmacogenetic profiling with a clinical decision support tool on healthcare resource utilization and estimated costs in the elderly exposed to polypharmacy    
    24 서명의 Parent-of-origin-specific signatures of de novo mutations    

    2016-08:
    06 김혜현 Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution    
    06 이정훈 A Landscape of Pharmacogenomic Interactions in Cancer    
    13 김효정 User-driven prioritization of features for a prospective InterPersonal Health Record: Perceptions from the Italian context    
    13 이우승 Protein-structure-guided discovery of functional mutations across 19 cancer types    
    20 이수현 Design considerations, architecture, and use of the Mini-Sentinel distributed data system    
    20 박호경 Natural Selection and Functional Potentials of Human Noncoding Elements Revealed by Analysis of Next Generation Sequencing Data    
    27 김기태 Identifying overlapping mutated driver pathways by constructing gene networks in cancer.    
    27 류영재 Determination of a Comprehensive Alternative Splicing Regulatory Network and Combinatorial Regulation by Key Factors during EMT    

    2016-07:
    02 김기태 An integrative somatic mutation analysis to identify pathways linked with survival outcomes across 19 cancer types    
    02 박지연 SURVIV for survival analysis of mRNA isoform variation     
    09 민병주 Frequency and Complexity of De Novo Structural Mutation in Autism    
    09 김주연 Computational discovery of transcription factors associated with drug response    
    16 류영재 Identification of important lncRNAs and highly recurrent aberrant alternative splicing events in HCC through integrative analysis of multiple RNA Seq datasets    
    16 서명의 Somatic activating mutations in GNAQ and GNA11 are associated with congenital hemangioma    
    23 박지혜 Metabolic Network Prediction of Drug Side Effects    
    23 서희원 Genic Intolerance to Functional Variation and the Interpretation of Personal Genomes.    
    30 박유미 The human gene damage index as a gene-level approach to prioritizing exome variants    
    30 이계화 The genetic architecture of type 2 diabetes    

    2016-06:
    04 김효정 Considering complexity in healthcare systems    
    04 윤선민 Network-based in silico drug efficacy screening     
    11 이수현 Detecting Drug Interactions From Adverse-Event Reports: Interaction Between Paroxetine and Pravastatin Increases Blood Glucose Levels    
    11 한지예 Rare genetic variants in cellular transporters, metabolic enzymes, and nuclear receptors can be important determinants of interindividual differences in drug response.    
    18 김형준 SMART precision cancer medicine a FHIR-based app to provide genomic information at the point of care    
    18 이우승 Modeling local gene networks increases power to detect trans-acting genetic effects on gene expression    
    25 임영균 Characterizing genomic alterations in cancer by complementary functional associations    
    25 박호경 genome-wide association study identifies multiple loci for variation in human ear morphology    

    2016-05:
    07 박지혜 Genetic Variation among 82 Pharmacogenes: the PGRN-Seq data from the eMERGE Network     
    07 서희원 DIDA: A curated and annotated digenic diseases database     
    21 김혜현 Harnessing person-generated health data to accelerate patient-centered outcomes research: the Crohn’s and Colitis Foundation of America PCORnet Patient Powered Research Network    
    21 이정훈 Integrated Drug Expression Analysis for leukemia: an integrated in silico and in vivo approach to drug discovery    
    28 박유미 Genetic risk for autism spectrum disorders and neuropsychiatric variation in the general population    
    28 이계화 Comparison and integration of deleteriousness prediction methods for non synonymous SNVs in whole exome sequencing studies    

    2016-04:
    02 한지예 Polymorphisms and phenotypic analysis of Cytochrome P450 3A4 in the Uygur population in northwest China    
    02 김형준 Portal of medical data models information infrastructure for medical research and healthcare    
    09 윤선민 An Ensemble Based Top Performing Approach for NCI-DREAM Drug Sensitivity Prediction Challenge    
    09 임영균 Identification of neutral tumor evolution across cancer types    
    16 김기태 Cancer type-dependent genetic interactions between cancer driver alterations indicate plasticity of epistasis across cell types    
    16 박호경 Effect of malignancy rates on cost-effectiveness of routine gene expression classifier testing for indeterminate thyroid    
    23 류영재 Intron retention is a widespread mechanism of tumor-suppressor inactivation    
    23 민병주 Germline Mutations in Predisposition Genes in Pediatric Cancer    
    30 박지연 A network-based analysis of colon cancer splicing changes reveals a tumorigenesis-favoring regulatory pathway emanating from ELK1    
    30 서명의 De novo loss-of-function mutations in USP9X cause a female-specific recognizable syndrome with developmental delay and congenital malformations    

    2016-03:
    05 서희원 Quantifying prion disease penetrance using large population control cohorts     
    05 김현대 SMART on FHIR: a standards-based, interoperable apps platform for electronic health records    
    12 김혜현 An exploratory study using an openEHR 2-level modeling approach to represent common data elements    
    12 이정훈 Erosion of Conserved Binding Sites in Personal Genomes Points to Medical Histories    
    19 박유미 Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics    
    19 이계화 Polygenic overlap between schizophrenia risk and antipsychotic response: a genomic medicine approach    
    26 김효정 Development, implementation and evaluation of an information model for archetype based user responsive medical data visualization    
    26 이우승 Patterns and functional implications of rare germline variants across 12 cancer types    

    2016-02:
    06 한지예 Polymorphic Cytochrome P450 Enzymes (CYPs) and Their Role in Personalized Therapy    
    06 박호경 Association of peroxisome proliferator-activated receptor-gamma gene polymorphisms and gene-gene interaction with asthma risk    
    13 류영재 Identifying adverse drug reactions and drug-induced diseases using network-based drug mapping    
    13 민병주 Timing, rates and spectra of human germline mutation    
    20 김주연 A prognostic model based on readily available clinical data enriched a pre-emptive pharmacogenetic testing program    
    20 박지연 SRSF1-Regulated Alternative Splicing in Breast Cancer    
    27 서명의 Mutations in the transcriptional repressor REST predispose to Wilms tumor    
    27 박지혜 Prediction of drugs having opposite effects on disease genes in a directed network     

    2016-01:
    02 unknown 새해복 많이 받으세요. 
    02 unknown Happy New Year 
    09 이계화 The contribution of rare variation to prostate cancer heritability    
    09 임영균 A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing    
    16 unknown NCRC & 연구발표회 
    16 unknown NCRC & 연구발표회 
    23 김혜현 Use of the Blue Button Online Tool for Sharing Health Information: Qualitative Interviews With Patients and Providers    
    23 이우승 Systematic discovery of complex insertions and deletions in human cancers    
    30 김형준 A system to build distributed multivariate models and manage disparate data sharing policies    
    30 윤선민 Leveraging ancestry to improve causal variant identification in exome sequencing for monogenic disorders    

    2015-12:
    05 민병주 Post-zygotic Point Mutations Are an Underrecognized Source of De Novo Genomic Variation    
    05 박지연 RNA-Seq of Tumor-Educated Platelets Enables Blood-Based Pan-Cancer, Multiclass, and Molecular Pathway Cancer Diagnostics    
    12 김주연 Making pharmacogenomic-based prescribing alerts more effective: A scenario-based pilot study with physicians    
    12 서명의 Germline heterozygous variants in SEC23B are associated with Cowden Syndrome and enriched in apparently sporadic thyroid cancer    
    19 이정훈 Pan-cancer analysis of the extent and consequences of intratumor heterogeneity    
    19 서희원 BOOGIE: Predicting Blood Groups from High Throughput Sequencing Data     
    26 박유미 Systematic comparison of variant calling pipelines using gold standard personal exome variants    
    26 김현대 A comparison of two Detailed Clinical Model representations: FHIR and CDA    

    2015-11:
    07 unknown TBC 2015 
    07 unknown TBC 2015 
    14 임영균 An Evolutionary Approach for Identifying Driver Mutations in Colorectal Cancer    
    14 한지예 Cost-Effectiveness of Combinatorial Pharmacogenomic Testing for Treatment-Resistant Major Depressive Disorder Patients    
    21 윤선민 Sequence to Medical Phenotypes: A Framework for Interpretation of Human Whole Genome DNA Sequence Data    
    21 김형준 SMART on FHIR Genomics: Facilitating standardized clinico-genomic apps    
    28 박호경 efficient genotype compression and analysis of large genetic-variation data sets    
    28 류영재 DGIdb 2.0: mining clinically relevant drug-gene interactions    

    2015-10:
    10 서희원 GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations    
    10 김혜현 Standardizing data exchange for clinical research protocols and case report forms: An assessment of the suitability of the CDISC ODM    
    17 이정훈 Patient-specific driver gene prediction and risk assessment through integrated network analysis of cancer omics profiles    
    17 김현대 Using electronic health record data to develop inpatient mortality predictive model: Acute Laboratory Risk of Mortality Score (ALaRMS)    
    24 박유미 Comprehensive genetic exploration of skeletal dysplasia using targeted exome sequencing    
    24 이수현 Feasibility and utility of applications of the common data model to multiple, disparate observational health databases    
    31 이계화 The UK10K project identifies rare variants in health and disease     
    31 이우승 Age-related mutations associated with colnal hemtopoietic expansion and malignancies    

    2015-09:
    05 박호경 Single-cell messenger RNA sequencing reveals rare intestinal cell types    
    05 류영재 Achieving high-sensitivity for clinical applications using augmented exome sequencing    
    12 민병주 Mutations in DDX3X Are a Common Cause of Unexplained Intellectual Disability with Gender-Specific Effects on Wnt Signaling    
    12 김주연 Electronic health record design and implementation for pharmacogenomics: a local perspective    
    19 서명의 Germline HABP2 Mutation Causing Familial Nonmedullary Thyroid Cancer    
    19 박지혜 The support of human genetic evidence for approved drug indications     

    2015-08:
    01 김효정 Associations between healthcare quality and use of electronic health record functions in ambulatory care    
    01 이우승 Recurrent somatic mutations in regulatory regions of human cancer genomes    
    08 이수현 Similarity-Based Modeling Applied to Signal Detection in Pharmacovigilance    
    08 한지예 Cost-effectiveness of one-time genetic testing to minimize lifetime adverse drug reactions    
    22 김형준 Semantic enrichment of clinical models towards semantic interoperability The heart failure summary use case.    
    22 윤선민 Human symptoms-disease network    
    29 임영균 Co-occurring Genomic Alterations Define Major Subsets of KRAS-Mutant Lung Adenocarcinoma with Distinct Biology, Immune Profiles, and Therapeutic Vulnerabilities    
    29 김기태 Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas    

    2015-07:
    11 이정훈 Integration of somatic mutation, expression, and functional data reveals potential driver genes predictive of breast cancer survival    
    11 김혜현 Development, implementation, and initial evaluation of a foundational open interoperability standard for oncology treatment planning and summarization    
    18 서희원 Genome-wide patterns and properties of de novo mutations in humans     
    18 김현대 Clinical decision support for atypical orders: detection and warning of atypical medication orders submitted to a computerized provider order entry system    
    25 박유미 Whole-genome sequence variation, population structure and demographic history of the Dutch population    
    25 이계화 Factors influencing success of clinical genome sequencing across a broad spectrum of disorders    

    2015-06:
    13 김기태 Somatic mutations in arachidonic acid metabolism pathway genes enhance oral cancer post-treatment disease-free survival     
    13 김주연 Adoption of a clinical PGx implementation program during outpatient care--initial results of the University of Chicago “1,200 Patients Project”    
    20 민병주 Cancer genomics: one cell at a time    
    20 류영재 DSigDB: Drug Signatures Database for Gene Set Analysis    
    27 서명의 Copy-Number Variation of the Glucose Transporter Gene SLC2A3 and Congenital Heart Defects in the 22q11.2 Deletion Syndrome    
    27 박지혜 Ranking Adverse Drug Reactions With Crowdsourcing    

    2015-05:
    02 박유미 Genetic Diagnosis of developmental disorders in the DDD study: a scalable analysis of genome-wide research data    
    02 김현대 Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes    
    09 이정훈 Improved data analysis for the MinION nanopore sequencer    
    09 이수연S Disease Risk Factors Identified Through Shared Genetic Architecture and Electronic Medical Records    
    16 이계화 Analysis of loss-of-function variants and 20 risk factor phenotypes in 8,554 individuals identifies loci influencing chronic disease    
    16 임영균 Assessing the clinical utility of cancer genomic and proteomic data across tumor types    
    23 윤선민 Large scale exploration and analysis of drug combinations    
    23 김형준 Lessons learned in detailed clinical modeling at Intermountain Healthcare    
    30 이수현 Systems Pharmacology Augments DrugSafety Surveillance    
    30 이우승 Characterization and identification of hidden rare variants in the human genome    

    2015-04:
    04 김기태 Uncovering disease-disease relationships through the incomplete interactome    
    04 류영재 SFINX - a drug-drug interaction database designed for clinical decision support systems    
    11 민병주 Germline loss-of-function mutations in LZTR1 predispose to an inherited disorder of multiple schwannomas    
    11 김주연 Economic evaluation of a pharmacogenetic dosing algorithm for coumarin anticoagulants in The Netherlands     
    18 서명의 A recurrent mutation in PARK2 is associated with familial lung cancer    
    18 박지혜 Development of a broad-based ADME panel for use in pharmacogenomic studies     
    25 서희원 Drug2Gene: an exhaustive resource to explore effectively the drug-target relation network.    
    25 김혜현 A methodology for a minimum data set for rare diseases to support national centers of excellence for healthcare and research    

    2015-03:
    07 이수연S How common are drug and gene interactions? Prevalence in a sample of 1143 patients with CYP2C9, CYP2C19 and CYP2D6 genotyping    
    07 박유미 Ethnic specific associations of rare and low frequency DNA sequence variants with asthma    
    14 이계화 Actionable exomic incidental findings in 6503 participants: challenges of variant classification.    
    14 이우승 DNA methylation age of human tissues and cell types    
    21 이수현 Medication-wide association studies    
    21 김형준 Ontology-Based Data Integration between Clinical and Research Systems    
    28 윤선민 Human Genome Variation and the Concept of Genotype Networks    
    28 임영균 A method for calculating probabilities of fitness consequences for point mutations across the human genome    

    2015-02:
    07 김주연 PG4KDS: A Model for the Clinical Implementation of Pre-Emptive Pharmacogenetics    
    07 박지혜 The CYP2D6 Activity Score: Translating Genotype Information into a Qualitative Measure of Phenotype    
    14 서희원 Whole-genome sequencing of quartet families with autism spectrum disorder    
    14 김현대 Sharing behavioral data through a grid infrastructure using data standards    
    28 김혜현 Multi-source development of an integrated model for family health history    
    28 이정훈 Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data    

    2015-01:
    03 이수현 Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record    
    03 김형준 Multilingual Medical Data Models in ODM Format    
    10 이계화 Clonal Hematopoiesis and Blood-Cancer Risk Inferred from Blood DNA Sequence     
    10 윤선민 The role of the interactome in the maintenance of deleterious variability in human populations    
    17 엄세인 Trait-Associated SNPs Are More Likely to Be eQTLs. Annotation to Enhance Discovery from GWAS    
    17 류영재 In silico comparative characterization of pharmacogenomic missense variants    
    24 임영균 Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complex     
    24 김기태 Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss    
    31 민병주 Inactivating Mutations in NPC1L1 and Protection from Coronary Heart Disease    
    31 서명의 TBX6 Null Variants and a Common Hypomorphic Allele in Congenital Scoliosis    

    2014-12:
    06 안선주 Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types    
    06 서명의 Activating germline mutations in STAT3 cause early-onset multi-organ autoimmune disease    
    13 김주연 Development and use of active clinical decision support for preemptive pharmacogenomics    
    13 서희원 HTSeq-a Python framework to work with high-throughput sequencing data    
    20 김현대 A multi-technique approach to bridge electronic case report form design    
    20 김혜현 Are Meaningful Use Stage 2 certified EHRs ready for interoperability? Findings from the SMART C-CDA Collaborative    
    27 박유미 Somatic mutations identify a subgroup of aplastic anemia patients who progress to myelodysplastic syndrome    
    27 이우승 Mutational heterogeneity in cancer and the search for new cancer-associated genes    

    2014-11:
    01 백수연 Personalized pharmacogenomics profiling using whole-genome sequencing    
    01 박지혜 Korean, Japanese, and Chinese populations featured similar genes encoding drug-metabolizing enzymes and transporters: a DMET Plus microarray assessment    
    08 윤선민 Distribution and medical impact of loss-of-function variants in the Finnish founder population    
    08 임영균 Defining the disease liability of variants in the cystic fibrosis transmembrane conductance regulator gene    
    15 엄세인 Molecular Findings Among Patients Referred for Clinical Whole-Exome Sequencing    
    15 류영재 An empirical estimate of carrier frequencies for 400+ causal Mendelian variants: results from an ethnically diverse clinical sample of 23,453 individuals    
    22 임재현 Interpretation of Genomic Variants Using a Unified Biological Network Approach    
    22 이계화 Uncovering the Hidden Risk Architecture of the Schizophrenias: Confirmation in Three Independent Genome-Wide Association Studies    
    29 김기태 Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin    
    29 민병주 Refining analyses of copy number variation identifies specific genes associated with developmental delay    

    2014-10:
    04 서희원 A systematic review of cancer GWAS and candidate gene meta-analyses reveals limited overlap but similar effect sizes.    
    04 박유미 Breast Cancer Risk in Families with Mutations in PALB2    
    11 이수연S Pharmacogenomic characterization of gemcitabine response – a framework for data integration to enable personalized medicine    
    11 이우승 Genome-wide analysis of noncoding regulatory mutations in cancer    
    18 이수현 The U.S. Food and Drug Administration’s Mini-Sentinel program: status and direction    
    18 김형준 Procurement of shared data instruments for Research Electronic Data Capture (REDCap)    

    2014-09:
    06 임영균 Predicting Cancer-Specific Vulnerability via Data-Driven Detection of Synthetic Lethality    
    06 김기태 Integrative and comparative genomic analysis of HPV-positive and HPV-negative head and neck squamous cell carcinomas    
    13 민병주 Molecular defects in the factor X gene caused by novel heterozygous mutations    
    13 서명의 A common missense variant in NUDT15 confers susceptibility to thiopurine-induced leukopenia    
    20 김주연 Design and Anticipated Outcomes of the eMERGE-PGx Project: A Multicenter Pilot for Preemptive Pharmacogenomics in Electronic Health Record Systems    
    20 박지혜 Increased genetic diversity of ADME genes in African Americans compared with their putative ancestral source populations and implications for Pharmacogenomics     
    27 김현대 Modular design, application architecture, and usage of a self-service model for enterprise data delivery: The Duke Enterprise Data Unified Content Explorer (DEDUCE)    
    27 김혜현 Computing Health Quality Measures Using Informatics for Integrating Biology and the Bedside    

    2014-08:
    02 김혜현 Multi-Institutional Sharing of Electronic Health Record Data to Assess Childhood Obesity    
    02 서희원 The implications of familial incidental findings from exome sequencing: the NIH Undiagnosed Diseases Program experience    
    09 김현대 Automated UMLS-Based Comparison of Medical Forms 
    09 백수연 Network Characteristic Analysis of ADR-related Proteins and Identification of ADR-ADR Associations    
    16 박유미 Whole-exome sequencing identifies rare pathogenic variants in new predisposition genes for familial colorectal cancer    
    16 김주연 Preemptive genotyping for personalized medicine: design of the right drug, right dose, right time-using genomic data to individualize treatment protocol    
    23 이우승 Deep RNA sequencing Reveals dynamic regulation of myocardial noncoding rnas in failing human heart and remodeling with mechanical circulatory support 
    23 이수연S Quantifying rare, deleterious variation in 12 human cytochrome P450 drug-metabolism genes in a large-scale exome dataset     
    30 임재현 Epistatic Selection between Coding and Regulatory Variation in Human Evolution and Disease 
    30 이계화 Comprehensive molecular characterization of gastric adenocarcinoma 

    2014-07:
    05 고인석 Personal health records: a randomized trial of effects on elder medication safety    
    05 김기태 Network-based stratification of tumor mutations    
    12 민병주 Whole-genome DNA methylation profiling using MethylCap-seq    
    12 안선주 Integrated RNA and DNA sequencing improves mutation detection in low purity tumors    
    19 박지혜 Using Multiplexed Assays of Oncogenic Drivers in Lung Cancers to Select Targeted Drugs 
    19 서명의 Diagnosis of copy number variation by Illumina next generation sequencing is comparable in performance to oligonucleotide array comparative genomic hybridisation    
    26 김주연 Computational Drug Repositioning: From Data to Therapeutics    
    26 서희원 ISMB_Review: MicroRNA-Gene Association As a Prognostic Biomarker in Cancer Exposes Disease Mechanisms    
    26 김기태 ISMB review : Simultaneously identification of multiple driver pathways in cancer 
    26 박지혜 ISMB review : A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes    
    26 임재현 Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures 
    26 임영균 ISMB review: Dissecting cancer heterogeneity with a probabilistic genotype-phenotype model    

    2014-06:
    07 김혜현 Toward Enhanced Pharmacovigilance using Patient-Generated Data on the Internet  
    07 박유미 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy    
    14 백수연 Integrating Systems Biology Sources Illuminates Drug Action    
    14 임재현 Heritability and genomics of gene expression in peripheral blood 
    21 이수연S Clinical Interpretation and Implications of Whole-Genome Sequencing  
    21 이우승 Association Between BRAF V600E Mutation and Mortality in Patients With Papillary Thyroid Cancer 
    28 이계화 Prioritizing Diesase-Linked Variants, Genes, and Pathways with an Integrative Whole-Genome Analysis Pipeline    
    28 임영균 A general framework for estimating the relative pathogenicity of human genetic variants.    

    2014-05:
    03 김기태 Integrative and Comparative Genomic Analysis of Lung Squamous Cell Carcinomas in East Asian Patients    
    03 민병주 A SWI/SNF-related autism syndrome caused by de novo mutations in ADNP    
    10 안선주 Technical Variations in Low-Input RNA-seq Methodologies    
    10 서명의 Loss-of-function mutations in SLC30A8 protect against type 2 diabetes    
    17 박지혜 Allelic expression of deleterious protein-coding variants across human tissues  
    17 김주연 Optimizing Drug Outcomes through Pharmacogenetics: a Case for Preemptive genotyping    
    24 서희원 Personalized genomic disease risk of volunteers    
    24 김현대 Presentation of clinical laboratory results 

    2014-04:
    05 김혜현 Using ontology-based annotation to profile disease research    
    05 이수연S Inconsistency in large pharmacogenomic studies    
    12 이수현 Dose-specific adverse drug reaction identification in electronic patient records: temporal data mining in an inpatient psychiatric population.    
    12 백수연 Systematic identification of genomic markers of drug sensitivity in cancer cells    
    19 임재현 Understanding mechanisms underlying human gene expression variation with RNA sequencing    
    19 이계화 Identification of potential synthetic lethal genes to p53 using a computational biology approach    
    26 임영균 Identification of synthetic lethal pairs in biological systems through network information centrality    
    26 고인석 Cross-domain targeted ontology subsets for annotation: The case of SNOMED CORE and RxNorm    

    2014-03:
    08 고인석 Automated Mapping of Pharmacy Orders from Two Electronic Health Record Systems to RxNorm within the STRIDE Clinical Data Warehouse    
    08 김기태 Comprehensive identification of mutational cancer driver genes across 12 tumor types    
    15 민병주 A Higher Mutational Burden in Females Supports a ‘‘Female Protective Model’’ in Neurodevelopmental Disorders    
    15 안선주 A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis    
    22 서명의 Using Whole-Exome Sequencing to Identify Inherited Causes of Autism    
    22 박지혜 Clinically Actionable Genotypes Among 10,000 Patients With Preemptive Pharmacogenomic Testing 
    29 김주연 DGIdb: mining the druggable genome    
    29 서희원 Rare coding variants in the phospholipase D3 gene confer risk for Alzheimer’s disease    

    2014-02:
    15 이계화 InSiGHT    
    15 임영균 Discovery and saturation analysis of cancer genes across 21 tumour types    

    2014-01:
    04 이수연S Chemotherapeutic drug susceptibility associated SNPs are enriched in expression quantitative trait loci    
    04 김혜현 Development and evaluation of an ensemble resource linking medications to their indications    
    18 서희원 Genetic variants associated with warfarin dose in African-American individuals: a genome-wide association study    
    18 이수현 Phenotyping for patient safety: algorithm development for electronic health record based automated adverse event and medical error detection in neonatal intensive care    
    25 백수연 A Structure-Based Approach for Mapping Adverse Drug Reactions to the Perturbation of Underlying Biological Pathways    
    25 임재현 Incorporating personalized gene sequence variants, molecular genetics knowledge, and health knowledge into an EHR prototype based on the Continuity of Care Record standard 

    2013-12:
    07 이계화 Tracking the clonal origin of lethal prostate cancer    
    07 임영균 Integrative annotation of variants from 1092 humans: application to cancer genomics.    
    14 고인석 Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium    
    14 안선주 Finding the active genes in deep RNA-seq gene expression studies    
    21 민병주 Diagnostic Exome Sequencing in Persons with Severe Intellectual Disability    
    21 김기태 Mutational landscape and significance across 12 major cancer types 
    28 서명의 Assessing the phenotypic effects in the general population of rare variants in genes for a dominant Mendelian form of diabetes    
    28 박지혜 PubChem BioAssay : 2014 update    

    2013-11:
    02 서명의 A new subtype of bone sarcoma defined by BCOR-CCNB3 gene fusion    
    02 민병주 Clinical Whole-Exome Sequencing for the Diagnosis of Mendelian Disorders    
    09 안선주 Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data    
    09 박지혜 Systematic Pharmacogenomics Analysis of Malay Whole Genome : Proof of Concept for Personalized Medicine    
    16 이수연S Pathway analysis of genome-wide data improves warfarin dose prediction    
    16 김혜현 A method for inferring medical diagnoses from patient similarities    
    23 임재현 Altering physiological networks using drugs: steps towards personalized physiology 
    23 이수현 Harvest: an open platform for developing web-based biomedical data discovery and reporting applications    
    30 백수연 The Coriell personalized medicine collaborative pharmacogenomics appraisal, evidence scoring and interpretation system    
    30 서희원 canSAR: an integrated cancer public translational research and drug discovery resource    

    2013-10:
    05 이수현 Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text. 
    05 이수연S Analytical and simulation methods for estimating the potential predictive ability of genetic profiling: a comparison of methods and results    
    12 백수연 Predicting Adverse Drug Reactions Using Publicly Available PubChem BioAssay Data    
    12 임재현 Transcriptome and genome sequencing uncovers functional variation in humans  
    19 임영균 Discovery Analysis of TCGA Data Reveals Association between Germline Genotype and Survival in Ovarian Cancer Patients 
    19 이계화 Deleterious- and disease-allele prevalence in healthy individuals insights from current predictions, mutation databases, and population-scale resequencing.    
    26 고인석 Utilizing RxNorm to support practical computing applications: Capturing medication history in live electronic health records    
    26 김기태 Germline variation in TP53 regulatory network genes associates with breast cancer survival and treatment outcome 

    2013-09:
    07 고인석 Evaluating standard terminologies for encoding allergy information    
    07 김기태 DrGaP: A Powerful Tool for Identifying Driver Genes and Pathways in Cancer Sequencing Studies    
    14 서명의 Mutations in NOTCH2 cause Hajdu-Cheney syndrome, a disorder of severe and progressive bone loss    
    14 민병주 Detection of Clinically Relevant Genetic Variants in Autism Spectrum Disorder by Whole-Genome Sequencing    
    28 서희원 Signatures of mutational processes in human cancer    
    28 김혜현 Normalized names for clinical drugs: RxNorm at 6 years    

    2013-08:
    03 박이영  
    03 서명의 Germline mutations affecting the proofreading domains of POLE and POLD1 predispose to colorectal adenomas and carcinomas    
    10 김혜현 The feasibility of QR-code prescription in Taiwan    
    10 이수연S Variations in predicted risks in personal genome testing for common complex diseases    
    17 이수현 Effect of Direct-to-Consumer Genomewide Profiling to Assess Disease Risk    
    17 임재현 Structure of Protein Interaction Networks and Their implications on Drug Design 
    24 서희원 The Exomes of the NCI-60 Panel: A Genomic Resource for Cancer Biology and Systems Pharmacology    
    24 백수연 Using SIFT and PolyPhen to Predict Loss-of-Function and Gain-of-Function Mutations    
    31 이계화 MI-ONCOSEQ_1    
    31 임영균  

    2013-07:
    06 이계화 Total and Regional Adiposity and cognitive change in older adults -The Health, aging and body composition(ABC) study    
    06 임영균 CpG island shore methylation regulates caveolin-1 expression in breast cancer      
    20 고인석 Mapping Partners Master Drug Dictionary to RxNorm using an NLP-based approach 
    20 김기태 Comprehensive molecular characterization of clear cell renal cell carcinoma 
    27 임재현 Target Essentiality and Centrality Characterize Drug Side Effects 
    27 민병주 Frequent somatic mutations in MAP3K5 and MAP3K9 in metastatic melanoma identified by exome sequencing    

    2013-06:
    01 박이영 Evolution of the cancer genome 
    01 김기태 integrated genomic characterization of endometrial carcinoma 
    08 서명의 Mutations in NMNAT1 cause Leber congenital amaurosis and identify a new disease pathway for retinal degeneration    
    08 민병주 Exome sequencing supports a de novo mutational paradigm for schizophrenia    
    15 정용 Discovery of Stress Responsive DNA Regulatory Motifs in Arabidopsis    
    15 김혜현 A corpus-based approach for automated LOINC mapping 
    22 이수연S Annotation of functional variation in personal genomes using RegulomeDB.     
    22 이수현 Performance of pharmacovigilance signal-detection algorithms for the FDA adverse event reporting system.    
    29 백수연 Improving the Assessment of the Outcome of Nonsynonymous SNVs with a Consensus Deleteriousness Score, Condel    
    29 박이영 The Life History of 21 Breast Cancers    

    2013-05:
    04 백수연 Literature Based Drug Interaction Prediction with Clinical Assessment Using Electronic Medical Records: Novel Myopathy Associated Drug Interactions     
    04 임재현 An Integrated Approach to Uncover Drivers of Cancer 
    11 임영균 DNA co-methylation analysis suggests novel functional associations between gene pairs in breast cancer samples    
    11 서희원 Comprehensive genomic characterization defines human glioblastoma genes and core pathways    
    25 고인석 The ISO/IEC 11179 norm for metadata registries: Does it cover healthcare standards in empirical research?    
    25 이계화 Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia 

    2013-04:
    06 박이영 Risk Prediction of Complex Diseases from Family History and Known Susceptibility Loci, with Applications for Cancer Screening    
    06 임재현  
    13 서명의 Mosaic overgrowth with fibroadipose hyperplasia is caused by somatic activating mutations in PIK3CA     
    13 민병주 Germline BAP1 mutations predispose to malignant mesothelioma     
    20 서희원 Personalized Pathway Enrichment Map of Putative Cancer Genes from Next Generation Sequencing Data    
    20 김혜현 SHRINE: Enabling Nationally Scalable Multi-Site Disease Studies    
    27 이수연S Cancer GAMAdb: database of cancer genetic associations from meta-analyses and genome-wide association studies    
    27 이수현 Pharmacovigilance Using Clinical Notes.    

    2013-03:
    02 서희원 Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants    
    02 김혜현 Lifelog Data Model and Management: Study on Research Challenges    
    09 이수연S SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS.    
    09 이수현 Enhancing Adverse Drug Event Detection in Electronic Health Records Using Molecular Structure Similarity:Application to Pancreatitis  
    16 백수연 SNAP: predict effect of non-synonymous polymorphisms on function    
    16 임재현 Genomic Variation landscape of the human gut microbiome     
    23 이계화 A method for identifying biomarkers of aging and constructing an index of biological age in humans    
    23 정용 Functional characterization of motif sequences under purifying selection    
    30 임영균 Identification of markers associated with global changes in DNA methylation regulation in cancers      
    30 고인석 The effect of electronic medical record system sophistication on preventive healthcare for women 

    2013-02:
    02 정용 Functional Characterization of Transcription Factor Motifs Using Cross-species Comparison across Large Evolutionary Distances    
    02 Alexander A gene ontology inferred from molecular networks      
    09 윤준희 GenePING : secure, scalable management of personal genomic data 
    09 김도균 ATHENA A tool for meta-dimensional analysis applied to genotypes and gene expression data to predict HDL cholesterol levels    
    23 나영지 Disease-related mutations predicted to impact protein function 
    23 조용래 PASTE: patient-centered SMS text tagging in a medication management system    

    2013-01:
    05 정용 Contribution of Transcription Factor Binding Site Motif Variants to Condition-Specific Gene Expression Patterns in Budding Yeast    
    05 서희원 Performance comparison of whole-genome sequencing platforms    
    12 이수연S DARNED: a DAtabase of RNa EDiting in humans    
    12 정제균 CAERUS: Predicting CAncER oUtcomeS Using Relationship between Protein Structural Information, Protein Networks, Gene Expression Data, and Mutation Data    
    19 이수현 The EU-ADR Web Platform: delivering advanced pharmacovigilance tools.     
    19 백수연 Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference    
    26 임재현 lincRNA Disease association 
    26 이계화 Clonal evolution in relapsed acute myeloid leukemia revealed by whole genome sequencing    

    2012-12:
    01 이계화 A novel, privacy-preserving cryptographic approach for sharing sequencing data.    
    01 이수현 Comparative analysis of pharmacovigilance methods in the detection of adverse drug reactions using electronic medical records    
    08 강병희 Integration of External signaling Pathways with the Core Transctriptional Network in Embryonic Stem Cells 
    08 김혜현 Federated ontology-based queries over cancer data 
    15 손경아 Tissue of origin determines cancer-associated CpG island promoter hypermethylation patterns    
    15 Alexander Associating Genes and Protein Complexes with Disease via Network Propagation      
    22 나영지 Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing    
    22 윤준희 Atlas2 Cloud: a framework for personal genome analysis in the cloud    
    29 조용래 A pragmatic method for electronic medical record-based observational studies - developing an electronic medical records retrieval system for clinical research    
    29 김도균 PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations    

    2012-11:
    03 김도균 PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis    
    03 조용래 The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research    
    10 서희원 In silico blood genotyping from exome sequencing data    
    10 김혜현 Clinical documentation: composition or synthesis?    
    17 이수연S Subnetwork-based analysis of chronic lymphocytic leukemia identi&    
    17 정제균 An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people    
    24 임재현 Alternative isoform regulation in human tissue transcriptomes    
    24 백수연 Large-scale prediction and testing of drug activity on side-effect targets    

    2012-10:
    06 강병희 the genetic landscape of a cell    
    06 임재현 Encode(2) : Landscape of transcription in human cells     
    13 전체 TBC 
    13 전체 TBC 
    20 이계화 A framework for evaluating the appropriateness of clinical decision support alerts and reponses    
    20 손경아 Comparative analysis of somatic copy-number alterations across different human cancer types reveals two distinct classes of breakpoint hotspots 
    27 임재현 Analysis and design of RNA sequencing experiments for identifying isoform regulation(MISO)    
    27 나영지 Linking disease associations with regulatory information in the human genome    

    2012-09:
    01 김도균 Comprehensivemolecular characterization of human colon and rectal cancer    
    01 임재현 Chromatin organization is a major influence on regional mutation rates in human cancer cells     
    08 김혜현 Portability of an algorithm to identify rheumatoid arthritis in electronic health records    
    08 이수연S How accurate can genetic predictions be?    
    15 정제균 Patterns and rates of exonic de novo mutations in autism spectrum disorders    
    15 이수현 Development and evaluation of a common data model enabling active drug safety surveillance using disparate healthcare databases    
    22 백수연 Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers.    
    22 정용 Construction of regulatory networks using expression time-series data of a genotyped population    

    2012-08:
    04 조용래 Emerging Patient-Driven Health Care Models: An Examination of Health Social Networks, Consumer Personalized Medicine and Quantified Self-Tracking    
    04 나영지 The CancerCell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity    
    11 강병희 ISMB Review 
    11 임재현 ISMB Review 
    18 서희원 Highly interconnected genes in disease-specific networks are enriched for disease-associated polymorphisms    
    18 윤준희 Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics    
    25 나영지 Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes    
    25 강병희 The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups    

    2012-07:
    07 김혜현 An i2b2-based, generalizable, open source, self-scaling chronic disease registry    
    07 이수연S REGENT: a risk assessment and classi&    
    21 정제균 Personalized Pathway Enrichment Map of Putative Cancer Genes from Next Generation Sequencing Data    
    21 이수현 Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs    
    28 백수연 ranking of multidimensional drug profiling data by fractional adjusted bi-partitional scores    
    28 이계화 Variation in Patient-Sharing Networks of Physicians Across the United States    

    2012-06:
    02 김경화 Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states    
    02 강병희 Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses     
    09 임재현 Transcriptomic analysis of autistic brain reveals convergent molecular pathology    
    09 이계화 Operational implementation of Prospective Genotyping for Personalized Medicine: The Design of the Vanderbilt PREDICT Project    
    16 정용 Clustering of DNA Sequences in Human Promoters    
    16 백수연 A pharmacogenomic method for individualized prediction of drug sensitivity    
    23 임재현 Differential expression in RNA-seq:A matter of depth    
    23 김도균 A Mathematical Methodology for Determining the Temporal Order of Pathway Alterations Arising during Gliomagenesis    
    30 조용래 Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record    
    30 서희원 A high-resolution map of human evolutionary constraint using 29 mammals    

    2012-05:
    12 이수연S Microarray meta-analysis database (M2DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database    
    12 정제균 Transcriptomic landscape of breast cancers through mRNA sequencing    
    19 이수현 High-priority drug-drug interactions for use in electronic health records    
    19 윤준희 Interpretome: A Freely available, modular, and secure personal genome interpretation engine     

    2012-04:
    07 김도균 Mutual exclusivity analysis identifies oncogenic network modules    
    07 김혜현 The SMART Platform: early experience enabling substitutable applications for electronic health records    
    14 윤준희 PSB Review 
    14 김혜현 AMIA Review 
    21 나영지 Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes    
    21 조용래 Serving the enterprise and beyond with informatics for integrating biology and the bedside    
    28 박유랑 Quality evaluation of value sets from cancer study common data elements using the UMLS semantic groups    
    28 서희원 Detecting and annotating genetic variations using the HugeSeq pipeline.    

    2012-03:
    03 조용래 An Environment-Wide Association Study (EWAS) on Type 2 diabetes    
    03 김혜현 Social but safe? Quality and safety of diabetes-related online social networks    
    10 서희원 A Combination of Dopamine Genes Predicts Success by Professional Wall Street Traders    
    10 정제균 A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes    
    17 박유랑 Impact of data fragmentation across healthcare centers on the accuracy of a high-throughput clinical phenotyping algorithm for specifying subjects with type 2 diabetes mellitus    
    17 이수연S Content-based microarray search using differential expression profiles    
    24 이수현 Data-Driven Prediction of Drug Effects and Interactions    
    24 백수연 Systematic Drug Repositioning Based on Clinical Side-Effects    
    31 김경화 Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing    
    31 윤준희 A comparison of cataloged variation between International HapMap Consortium and 1000 Genomes Project data    

    2012-02:
    04 정희준 CancerResource: a comprehensive database of cancer-relevant proteins and compound interactions supported by experimental knowledge    
    04 백수연 FusionMap : detecting fusion genes from next-generation sequencing data at base-pair resolution    
    18 이수연 Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing    
    18 윤준희 Using text to build semantic networks for pharmacogenomics    
    25 나영지 Exome Sequencing Reveals DNAJB6 Mutations in Dominantly Inherited Myopathy    
    25 김도균 Association of BRCA1 and BRCA2 mutations with survival, chemotherapy sensitivity, and gene mutator phenotype in patients with ovarian cancer    

    2012-01:
    07 나영지 Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease    
    07 김도균 Integrative network analysis to identify aberrant pathway networks in ovarian cancer    
    14 조용래 Incorporating personalized gene sequence variants, molecular genetics knowledge, and health knowledge into an EHR prototype based on the CCR standard    
    14 이수현 Predicting Adverse Drug Events Using Pharmacological Network Models     
    20 윤선민 A Network-Based Approach to Prioritize Results from Genome-Wide Association Studies     
    20 김혜현 Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study    
    28 이수연S Web-Based Genome-Wide Association Study Identifies Two Novel Loci and a Substantial Genetic Component for Parkinson Disease     
    28 정제균 Defining the Role of Essential Genes in Human Disease    

    2011-12:
    03 김혜현 BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications    
    03 이수연S Modelling schizophrenia using human induced pluripotent stem cells    
    10 정제균 Protein localization as a principal feature of the etiology and comorbidity of genetic diseases    
    10 서희원 Phased Whole-Genome Genetic Risk in a Family Quartet Using a Major Allele Reference Sequence    
    17 윤준희 Assessing Vaccination Sentiments with Online Social Media: Implications for Infectious Disease Dynamics and Control    
    17 백수연 Network neighbors of drug targets contribute to drug side-effect similarity    
    24 정희준 PROMISCUOUS: a database for network-based drug-repositioning    
    24 김지훈 SNPedia: a wiki supporting personal genome annotation, interpretation and analysis    
    31 이수연 SeqGene a comprehensive software solution for mining exome- and transcriptome- sequencing data    
    31 박유랑 Validation of a common data model for active safety surveillance research    

    2011-11:
    05 박유랑 Integrating clinical research with the Healthcare Enterprise: From the RE-USE 3 project to the EHR4CR platform    
    05 나영지 Prioritizing candidate disease genes by network-based boosting of genome-wide association data    
    19 김도균 Time to recurrence and survival in serous ovarian tumors predicted from integrated genomic profiles    
    19 조용래 Evaluating Relevance Ranking Strategies for MEDLINE Retrieval    
    26 서희원 Predicting phenotypic variation in yeast from individual genome sequences    
    26 윤선민 Disease-associated epigenetic changes in monozygotic twins discordant for schizophrenia and bipolar disorder    

    2011-10:
    01 김혜현 Using machine learning for concept extraction on clinical documents from multiple data sources    
    01 이수연S Utility of genetic and non-genetic risk factors in prediction of type 2 diabetes: Whitehall II prospective cohort study.    
    08 정제균 Methyl-Analyzer—whole genome DNA methylation profiling    
    08 이수현 Comparison of a basic and an advanced pharmacotherapy-related clinical decision support system in a hospital care setting in the Netherlands     
    22 윤준희 Generating Genome-Scale Candidate Gene Lists for Pharmacogenomics     
    22 백수연 Discovery of drug mode of action and drug repositioning from transcriptional responses    
    29 정희준 PREDICT: a method for inferring novel drug indications with application to personalized medicine.    
    29 김지훈 Correlated genotypes in friendship networks    

    2011-09:
    03 박유랑 Quality Evaluation of Cancer Study Common Data Elements Using the UMLS Semantic Network    
    03 나영지 Exome Sequencing and Unrelated Findings in the Context of Complex Disease Research: Ethical and Clinical Implications    
    17 김도균 A development taxonomy of GBM defined and maintained by microRNAs    
    17 조용래 Genotype Score in addition to common risk factors for prediction of type 2 diabetes    
    24 서희원 S tructural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly.    
    24 윤선민 The implications of relationships between human diseases and metabolic subpathways    

    2011-08:
    06 김도균 A ten-microRNA expression signature predicts survival in glioblastoma    
    06 김혜현 Sharing Data for Public Health Research by Members of an International Online Diabetes Social Network    
    13 박유랑 Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience    
    13 이수현 Use of primary care electronic medical record database in drug efficacy research on cardiovascular outcomes: comparison of database and randomised controlled trial findings    
    20 정제균 A DNA methylation fingerprint of 1,628 human samples    
    20 이수연S Extensive genomic and transcriptional diversity identified through massively parallel DNA and RNA sequencing of eighteen Korean individuals    
    27 김지훈 Automated validation of genetic variants from large databases ensuring that variant references refer to the same genomic locations    
    27 정희준 Discovery and preclinical validation of drug indications using compendia of public gene expression data     

    2011-07:
    02 이수현 A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports    
    02 김지훈 The use of VAAST to identify an X-linked disorder resulting in lethality in male infants due to N-terminal acetyltransferase deficiency    
    16 정희준 Gene-Disease Network Analysis Reveals Functional Modules in Mendelian, Complex and Environmental Diseases    
    16 이수연 MU2A - reconciling the genome and transcriptome to determine the effects of base substitutions    
    23 서희원 Exploring the Genetic Basis of Variation in Gene Predictions with a Synthetic Association Study    
    23 나영지 Exome sequencing and disease-network analysis of a single family implicate a mutation in KIF1A in hereditary spastic paraparesis    
    30 윤선민 Obesity related methylation changes in DNA of peripheral blood leukocytes    
    30 조용래 A knowledge discovery and reuse pipeline for information extraction in clinical notes    

    2011-06:
    04 나영지 A Novel Adaptive Method for the Analysis of Next-Generation Sequencing Data to Detect Complex Trait Associations with Rare Variants Due to Gene Main Effects and Interactions    
    04 조용래 Effect of Direct-to-Consumer Genomewide Profiling to Assess Disease Risk    
    11 서희원 Whole-Exome Re-Sequencing in a Family Quartet Identifies POP1 Mutations As the Cause of a Novel Skeletal Dysplasia    
    11 정제균 Data Integration Workflow for Search of Disease Driving Genes and Genetic Variants    
    18 박유랑 Data standards for clinical research data collection forms: current status and challenges    
    18 윤선민 Leukocyte DNA methylation signature differentiates pancreatic cancer patients from healthy controls    
    25 김도균 Correlation of somatic mutation and expression identifies genes important in human glioblastoma progression and survival    
    25 이수연S Widespread RNA and DNA Sequence Differences in the Human Transcriptome    

    2011-05:
    07 김혜현 The ClinicalTrials.gov Results Database Update and Key Issues    
    07 이수연S DSGeo: Software tools for cross-platform analysis of gene expression data in GEO     
    14 정제균 ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments    
    14 이수현 A web-based quantitative signal detection system on adverse drug reaction in china    
    21 김지훈 Global analysis of disease-related DNA sequence variation in 10 healthy individuals: implications for whole genome-based clinical diagnostics    
    21 이수연 miRGator v2.0 : an integrated system for functional investigation of microRNAs    
    28 정희준 CCancer a bird’s eye view on gene lists reported in cancer-related studies     
    28 김혜현 AGUIA: autonomous graphical user interface assembly for clinical trials semantic data services    

    2011-04:
    02 정희준 PathLocdb: a comprehensive database for the subcellular localization of metabolic pathways and its application to multiple localization analysis    
    02 김지훈 Improving disease gene prioritization using the semantic similarity of Gene Ontology terms      
    09 이수연 Towards computational prediction of microRNA function and activity    
    09 박유랑 The military health system`s personal health record pilot with Microsoft HealthVault and Google Health    
    16 나영지 A map of human genome variation from population-scale sequencing    
    16 김도균 Detecting Cancer Gene Networks Characterized by Recurrent Genomic Alterations in a Population    
    23 송영수 Targeted next-generation sequencing detects point mutations, insertions, deletions and balanced chromosomal rearrangements as well as identifies novel leukemia-specific fusion genes in a single proced    
    23 조용래 Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions    
    30 서희원 Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level.     
    30 윤선민 Metabolic Robustness and Network Modularity: A Model Study    

    2011-03:
    05 이수연S A global map of human gene expression    
    05 김혜현 Future Developments of Medical Informatics from the Viewpoint of Networked Clinical Research    
    12 송영수 Cancer Therapy Design Based on Pathway Logic    
    12 윤선민 A sub-pathway-based approach for identifying drug response principal network    
    19 조용래 Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak    
    19 서희원 Discovery of common Asian copy number variants using integrated high-resolution arrayCGH and massively parallel DNA sequencing     
    26 이수현 Comorbidity and repeat admission to hospital for adverse drug reactions in older adults: retrospective cohort study    
    26 정제균 Measuring the Evolutionary Rewiring of Biological Networks    

    2011-02:
    12 이수현 a method for encoding clinical datasets with SNOMED-CT     
    12 정희준 Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation    
    19 이수연 Using GOstats to test gene lists for GO term association    
    19 박유랑 NINDS common data element project: a long-awaited breakthrough in streamlining trials.    
    26 나영지 Clinical assessment incorporating a personal genome    
    26 김도균 CNAmet_an R package for integrating copy number, methylation and expression data    

    2011-01:
    08 박유랑 Approaching semantic interoperability in Health Level Seven    
    08 강기원 A basic study design for expedited safety signal evaluation based on electronic healthcare data    
    15 윤선민 Biological Process Linkage Networks    
    15 김혜현 The UMLS-CORE project: a study of the problem list terminologies used in large healthcare institutions     
    22 송영수 Association of tissue lineage and gene expression: conservatively and differentially expressed genes define common and special functions of tissues    
    22 이수연S BioPortal: ontologies and integrated data resources at the click of a mouse    
    29 김도균 Large scale data integration framework provides a comprehensive view on glioblastoma multiforme    
    29 정제균 Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation 

    2010-12:
    11 정희준 Mutated genes, pathways and processes in tumours    
    11 이수연 miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature    
    18 나영지 Computational identification of tissue-specific alternative splicing elements in mouse genes from RNA-Seq    
    18 Rocky Single-nucleotide polymorphisms inside microRNA target sites influence tumor susceptibility    

    2010-11:
    06 Rocky MicroSNiPer : A Web Tool for Prediction of SNP Effects on Putative microRNA Targets    
    06 박찬희 permGPU: Using graphics processing units in RNA microarray association studies    
    13 송영수 The Human Phenotype Ontology    
    13 윤선민 FMM: a web server for metabolic pathway reconstruction and comparative analysis.    
    20 강기원 Epigenetic Epidemiology of Common Complex Disease: Prospects for Prediction, Prevention, and Treatment    
    27 이수연S Microarray retriever: a web-based tool for searching    
    27 이수현 Adverse Drug Reactions in Hospital In-Patients: A Prospective Analysis of 3695 Patient-Episodes    

    2010-10:
    02 김혜현 Heterogeneity prevails: the state of clinical trial data management in Europe - results of a survey of ECRIN centres    
    02 이수연S ArrArrayExpress update from an archive of functional genomics experiments to the atlas of gene expression    
    09 이수현 The Application of an Institutional Clinical Data Warehouse to the Assessment of Adverse Drug Reactions (ADRs)    
    09 박유랑 Scaling the walls of discovery: using semantic metadata for integrative problem solving    
    16 이수연 High-Throughput SuperSAGE for Digital Gene Expression Analysis of Multiple Samples Using Next Generation Sequencing    
    16 정희준 Systematic analysis, comparison, and integration of disease based human genetic association data and mouse genetic phenotypic information    
    30 나영지 CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data    
    30 김도균 An integrative mutidimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer    

    2010-09:
    04 이수연 RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays    
    04 나영지 Exome sequencing identifies the cause of a mendelian disorder    
    11 김도균 Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis    
    11 Rocky A Catalog of Polymorphisms Falling in MicroRNA-Binding Regions of Cancer Genes    
    18 박찬희 A standard variation file format for human genome sequences    
    18 송영수 HyBrow: a prototype system for computer-aided hypothesis evaluation    
    25 윤선민 Extending pathways based on gene lists using InterPro domain signatures    
    25 강기원 Identification and evaluation of a possible signal of exacerbation of colitis during rofecoxib treatment, using Prescription-Event Monitoring data    

    2010-08:
    07 김혜현 The FDA Critical Path Initiative and Its Influence on New Drug Development    
    07 윤선민 GeneMesh: a web-based microarray analysis tool for relating differentially expressed genes to MeSH terms    
    14 강기원 Mining consequence events in temporal health data    
    14 송영수 Symbolic rule-based classification of lung cancer stages from free-text pathology reports    
    21 이수연S Recent developments in StemBase: a tool to study gene expression in human and murine stem cells.    
    21 이수현 Computerized Surveillance for Adverse Drug Events in a Pediatric Hospital    
    28 정희준 PathText: a text mining integrator for biological pathway visualizations    
    28 박유랑 Supporting Ontology-Based Dynamic Property and Classification in WebSphere Metadata Server    

    2010-07:
    03 강기원 Applications in Detecting Adverse Drug Reactions : Applications in Detecting Adverse Drug Reactions    
    03 김혜현 Toward an ontology-based framework for clinical research databases    
    10 박유랑 Semantic web data warehousing for caGrid    
    10 이수연 DSAP : deep-sequencing small RNA analysis    
    17 정희준 MADNet: microarray database network web server    
    17 나영지 ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data    
    24 김도균 Improved Microarray-Based Decision Support with Graph Encoded Interactome Data    
    24 변상재 Pandora, a PAthway and Network DiscOveRy Approach based on common biological evidence    
    31 Rocky Human polymorphism at microRNAs and microRNA target sites    
    31 박찬희 Uniformly curated signaling pathways reveal tissue-specific cross-talks and support drug target discovery    

    2010-06:
    05 박유랑 Harmonization of health data at national level: A pilot study in China    
    05 나영지 Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma    
    12 김도균 International network of cancer genome projects    
    12 변상재 Fault Tolerance in Protein Interaction Networks: Stable Bipartite Subgraphs and Redundant Pathways    
    19 박찬희 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets    
    19 Rocky Genome-Wide Analysis of Small RNA and Novel MicroRNA Discovery in Human Acute Lymphoblastic Leukemia Based on Extensive Sequencing Approach    
    26 송영수 caTIES: a grid based system for coding and retrieval of surgical pathology reports and tissue specimens in support of translational research    
    26 윤선민 PhenoFam-gene set enrichment analysis through protein structural information    

    2010-05:
    01 나영지 LookSeq: A browser-based viewer for deep sequencing data    
    01 김도균 IntOGen: integration and data mining of multidimensional oncogenomic data    
    08 변상재 Rare Variants Create Synthetic Genome-Wide Associations    
    08 Rocky Discovery of Novel MicroRNAs in Female Reproductive Tract Using Next Generation Sequencing    
    15 박찬희 Deciphering the splicing code    
    15 송영수 Formulation of a model for automating infection surveillance: algorithmic detection of central-line associated bloodstream infection    
    22 윤선민 HAMSTER: visualizing microarray experiments as a set of minimum spanning trees    
    22 강기원 A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery    
    29 정희준 A Pathway-Based View of Human Diseases and Disease Relationships    
    29 이수연 Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms    

    2010-04:
    03 박찬희 The gputools package enables GPU computing in R    
    03 송영수 Statistical search on the Semantic Web    
    17 윤선민 NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways    
    17 정희준 HPD: an online integrated human pathway database enabling systems biology studies    
    24 이수연 Cepred: Predicting the Co-Expression Patterns of the Human Intronic microRNAs with Their Host Genes    
    24 박유랑 A metadata approach for clinical data management in translational genomics studies in breast cancer.    

    2010-03:
    06 윤선민 ConceptGen: a gene set enrichment and gene set relation mapping tool    
    06 정희준 PID: the Pathway Interaction Database    
    13 이수연 MTar: a computational microRNA target prediction architecture for human transcriptome    
    13 박유랑 The Enterprise Data Trust at Mayo Clinic: a semantically integrated warehouse of biomedical data    
    20 나영지 Repertoire of microRNAs in Epithelial Ovarian Cancer as Determined by Next Generation Sequencing of Small RNA cDNA Libraries    
    20 Rocky Ontology-driven indexing of public datasets for translational bioinformatics    
    27 김도균 Integration of clinical and microarray data with kernel methods    
    27 변상재 Large-scale prediction of protein-protein interactions from structures    

    2010-02:
    06 나영지 MIRAGAA-a methodology for finding coordinated effects of microRNA expression changes and genome aberrations in cancer    
    06 변상재 Incorporating functional inter-relationships into protein function prediction algorithms    
    20 김도균 Prediction of Human Functional Genetic Networks from Heterogeneous Data Using RVM-Based Ensemble Learning    
    20 Rocky An Analysis of Human MicroRNA and Disease Associations    
    27 박찬희 Multifactor Dimensionality Reduction for Graphics Processing Units Enables Genome-wide Testing of Epistasis in Sporadic ALS    
    27 송영수 An ontological modeling approach to cerebrovascular disease studies: The NEUROWEB case    

    2010-01:
    09 변상재 A methodology for the analysis of differential coexpression across the human lifespan    
    09 박찬희 Human gene expression sensitivity according to large scale meta-analysis    
    16 김도균 A statistical framework for genomic data fusion    
    16 Rocky In silico method for systematic analysis of feature importance in microRNA-mRNA interactions    
    23 송영수 Relations in biomedical ontologies    
    23 박유랑 Automated Database Mediation Using Ontological metadata mappings    
    30 이수연 Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts    
    30 정희준 PathCase: pathways database system 

    2009-12:
    05 김도균 Exome sequencing identifies the cause of a mendelian disorder    
    05 변상재 Gene set internal coherence in the context of functional profiling    
    12 Rocky Computational Challenges in miRNA Target Predictions: To Be or Not to Be a True Target?    
    12 박찬희 An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer    
    19 송영수 Standards to Support Information Systems Integration in Anatomic Pathology    
    19 정희준 Drug target identification using side-effect similarity    
    26 이수연 Genome-Wide Transcriptional Profiling Reveals MicroRNA-Correlated Genes and Biological Processes in Human Lymphoblastoid Cell Lines    
    26 나영지 mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their target    

    2009-11:
    07 김도균 A kernel based integration of genome wide data for clinical decision support    
    07 Rocky ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization    
    14 송영수 Application and evaluation of automated semantic annotation of gene expression experiments    
    14 정희준 WhichGenes: a web-based tools for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis    
    21 박찬희 Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists    
    21 강기원 Genomic signatures to guide the use of chemotherapeutics    
    28 이수연 Tissue and Process Specific microRNA-mRNA Co-Expression in Mammalian Development and Malignancy    
    28 나영지 Identification of microRNA activity by Targets Reverse EXpression    

    2009-10:
    10 Rocky mRNA expression profiles show differential regulatory effects of microRNAs between estrogen receptor-positive and estrogen receptor-negative breast cancer    
    10 박찬희 The effects of probe binding affinity differences on gene expression measurements and how to deal with them    
    17 송영수 The Stanford Tissue Microarray Database    
    17 강기원 Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer    
    24 정희준 KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database    
    24 나영지 Conserved Expression Patterns Predict microRNA Targets    
    31 이수연 Decoding global gene expression programs in liver cancer by noninvasive imaging    
    31 변상재 Integrating protein-protein interactions and text mining for protein function prediction    

    2009-09:
    05 강기원 Validation of Biomarker-Based Risk Prediction Models    
    05 심혜진 Corpus-based and Knowledge-based Measures of Text Semantic Similarity    
    12 정희준 A semantic web approach to biological pathwa data reasoning and integration    
    12 이수연 TargetMiner: MicroRNA target prediction with systematic identification of tissue specific negative example    
    19 박유랑 Metadata-Driven Software for Clinical Trials    
    19 나영지 microPred: effective classification of pre-miRNAs for human miRNA gene prediction    
    26 김도균 Pharmacogenomics 2009 Review 
    26 변상재 Semantic Similarity in Biomedical Ontologies    

    2009-08:
    01 Rocky DIANA-microT web server: elucidating microRNA functions through target prediction    
    01 우정훈 GEFERENCE: Reference Database for Construing Personal Genome Expression. (BIOCOMP`09 presentation)    
    08 변상재 Improved detection of overrepresentation of Gene-Ontology annotations with parent-child analysis    
    08 송영수 Non-genetic heterogeneity - a mutation-independent driving force for the somatic evolution of tumours    
    22 나영지 Intrinsic variability of gene expression encoded in nucleosome positioning sequences    
    22 김도균 Instrumenting the health care enterprise for discovery research in the genomic era    
    29 박찬희 CRONOS: the cross-reference navigation server      
    29 박유랑 Bridging real world semantics to model world semantics for taxonomy based knowledge representation system    

    2009-07:
    04 김도균 MIMAS 3.0 is a Multiomics Information Management and Annotation System    
    04 변상재 Gene Ontology term overlap as a measure of gene functional similarity    
    11 Rocky Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application    
    11 나영지 ISMBECCB2009 Conference report 
    18 송영수 The First RSBI (ISA-TAB) Workshop: “Can a Simple Format Work for Complex Studies?”    
    18 강기원 Decision support methods for the detection of adverse events in post-marketing data    
    25 정희준 ConsensusPathDB - a database for integraing human functional interaction networks    
    25 이수연 MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression    

    2009-06:
    13 송영수 Integration of Prostate Cancer Clinical Data Using an Ontology    
    13 강기원 Novel integration of hospital electronic medical records and gene expression measurements to identify genetic markers of maturation    
    20 정희준 Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation    
    20 이수연 GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists    
    27 박유랑 The clinical document architecture and the continuity of care record: a critical analysis    
    27 박찬희 UTGB Toolkit for Personalized Genome Browsers    

    2009-05:
    09 정희준 Medusa: a simple tool for interaction graph analysis and STRING database    
    09 이수연 Quality Assessment and Data Analysis for microRNA expression Arrays    
    16 박유랑 HL7 RIM: An Incoherent Standard    
    16 나영지 A combinatorial approach to determine the context-dependent role in transcriptional and posttranscriptional regulation in Arabidopsis thaliana    
    23 김도균 In Vitro Analysis of Integrated Global High-Resolution DNA Methylation Profiling with Genomic Imbalance and Gene Expression in Osteosarcoma    
    23 변상재 A relation based measure of semantic similarity for Gene Ontology annotations.    
    30 Rocky RNAdb뾞 comprehensive mammalian noncoding RNA database    
    30 박찬희 Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues    

    2009-04:
    04 변상재 GS2: An efficiently computable measure of GO-based similarity of gene sets    
    04 나영지 Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data    
    11 박유랑 Clinical Research Informatics: Challenges, Opportunities and Definition for an Emerging Domain [Clinical Research]   
    11 박찬희 GraphWeb: mining heterogeneous biological networks for gene modules with functional significance    
    18 김도균 Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome    
    18 Rocky Argonaute database for gene regulation by mammalian miRNAs    
    25 송영수 Cruella Developing a Scalable Tissue Microarray Data Management System    
    25 강기원 Changing course in ageing research- The Healthy Ageing Phenotype    

    2009-03:
    07 나영지 Filtering of false positive microRNA candidates by a clustering-based approach    
    07 김도균 GenomeGraphs: integrated genomic data visualization with R    
    14 변상재 Information theory applied to the sparse gene ontology annotation network to predict novel gene function    
    14 송영수 Bio2RDF: Towards a mashup to build bioinformatics knowledge systems    
    21 강기원 aging from molecules to populations    
    21 조성범 Gene expression trends and protein features effectively complement each other in gene function prediction    
    28 정희준 PathExpress: a web-based tool to identify relevant pathways in gene expression data      
    28 이수연 Comparison of normalization methods with microRNA microarray    

    2009-02:
    07 김도균 SIGMA2: A system for the integrative genomic multi-dimensilnal analysis of cancer genomes, epigenomes, and transcriptomes    
    07 변상재 Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data    
    14 송영수 Ontology driven integration platform for clinical and translational research    
    14 강기원 Meta-analysis of age-related gene expression profiles identifies common signatures of aging    
    21 조성범 Human microRNAs co-silence in well-separated groups and have different predicted essentialities    
    21 정희준 An integrative approach for biological data mining and visualization    
    28 이수연 MicroRNA target prediction by expression analysis of host genes    
    28 박유랑 Metadata mapping and reuse in caBIG    

    2009-01:
    03 정희준 Systematic reconstruction of TRANSPATH data into cell system markup language      
    03 송영수 A system for sharing routine surgical pathology specimens across institutions: the Shared Pathology Informatics Network    
    10 강기원 A method for identifying biomarkers of agings and constructing an index of biological age in humans    
    10 조성범 Identification of transcription factor and microRNA binding sites in responsible to fetal alcohol syndrome    
    17 정희준 KEGG spider: interpretation of genomics data in the context of the global gene metabolic network      
    17 이수연 Genomic Profiling of MicroRNA and Messenger RNA Reveals Deregulated MicroRNA Expression in Prostate Cancer    
    31 박유랑 The Common Data Elements for cancer research: remarks on functions and structure.    
    31 나영지 Finding microRNA regulatory modules in human genome using rule induction    

    2008-12:
    06 강기원 Further evaluation of the basic nature of the human biological aging process based on a factor analysis of age-related physiological variables    
    06 조성범 Gene Expression in Fixed Tissues and Outcome in Hepatocellular Carcinoma    
    13 김도균 Genome-wide screening of copy nuber alterations and LOH events in renal cell carcinomas and integration with gene expression profile    
    13 이수연 Global correlation analysis for micro-RNA and mRNA expression profiles in human cell lines    
    20 박유랑 Research electronic data capture (REDCap)-A metadata-driven methodology and workflow process for providing translational research informatics support.    
    20 나영지 Identification of MicroRNA Regulatory Modules in Arabidopsis via A Probabilistic Graphical Model    
    27 변상재 Correlation between Gene Expression and GO Semantic Similarity    

    2008-11:
    01 송영수 Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHE)    
    01 강기원 A new approach to the concept and computation of biological age    
    08 조성범 Network-based global inference of human disease genes    
    08 정희준 A global pathway crosstalk network    
    15 이수연 An Integrative Analysis of microRNA and mRNA Expression - A Case Study    
    15 박유랑 Auditing the Semantic Completeness of SNOMED CT Using Formal Concept Analysis    
    22 나영지 Analysis of regulatory network topology reveals functionally distinct classes of microRNAs    
    22 김도균 MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data    
    29 변상재 An ontology-driven semantic mashup of gene and biological pathway    
    29 송영수 Synoptic tool for reporting of hematological and lymphoid neoplasms based on World Health Organization classification and College of American Pathologists checklist.    

    2008-10:
    04 김도균 ECCB 2008 review 
    04 김도균 Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways    
    04 김도균 SIRENE: supervised inference of regulatory networks    
    04 김도균 Clinically driven semi-supervised class discovery in gene expression data    
    11 이수연 The roles of binding site arrangement and combinatorial targeting in microRNA repression of gene expression    
    11 박유랑 Translational Bioinformatics: Coming of Age 
    18 나영지 Removal of AU Bias from Microarray mRNA Expression Data Enhances Computational Identification of Active MicroRNAs    
    18 변상재 Metrics for GO based protein semantic similarity: a systematic evaluation    
    25 우정훈 RNA-seq Review 
    25 우정훈 Integrative Genomic Analysis 

    2008-09:
    06 김도균 Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma    
    06 변상재 Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments    
    20 송영수 Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project    
    20 강기원 Disentangling the Genetic Determinants of Human Aging:Biological Age as an Alternative to the Use of Survival Measures    
    27 조성범 Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data    
    27 정희준 Reconstructing networks of pathways via significance analysis of their intersections.      

    2008-08:
    02 정희준 Exploring the functional landscape of gene expression: directed search of large microarray compendia      
    09 나영지 Novel MicroRNA Candidates and miRNA-mRNA Pairs in Embryonic Stem (ES) Cells    
    09 변상재 ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses    
    16 송영수 Integrative mathematical oncology    
    16 이수연 mRNA/microRNA gene expression profile in microsatellite unstable colorectal cancer    
    23 정희준 A gene recommender algorithm to identify coexpressed genes in C. elegans      
    23 조성범 SIRENE: supervised inference of regulatory networks    
    30 박유랑 semCDI: A Query Formulation for Semantic Data Integration in caBIG      
    30 나영지 MicroRNA regulation and the variability of human cortical gene expression    

    2008-07:
    05 박유랑 A semantic grid infrastructure enabling integrated access and analysis of multilevel biomedical data in support of postgenomic clinical trials on cancer.    
    05 나영지 Proliferating cells express mRNAs with shorted 3-untranslated regions and fewer microRNA target sites    
    12 김도균 SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels 
    12 변상재 GEPAS, a web-based tool for microarray data analysis and interpretation    
    19 송영수 Differential variability analysis of gene expression and its application to human diseases    
    19 조성범 Nucleosome positioning from tiling microarray data    
    26 박유랑 The Primary Care Research Object Model (PCROM): A Computable Information Model for Practice-Based Primary Care Research    
    26 이수연 Prediction of both conserved and nonconserved microRNA    

    2008-06:
    07 박유랑 Metadata review    
    07 나영지 Individual mRNA expression profiles reveal the effects of specific microRNAs    
    14 김도균 SNP@Promoter: a database of human SNPs (Single Nucleotide    
    14 변상재 Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysis    
    21 송영수 Ontology-based, Tissue MicroArray oriented, image centered tissue bank    
    21 조성범 Computational epigenetics    
    28 정희준 Use and miuse of the gene ontology annotations    
    28 이수연 Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer    

    2008-05:
    03 정희준 The OBO Foundry: coordinated evulution of ontologies to support biomedical data integration    
    03 이수연 Computational analysis of biological functions and pathways    
    10 박유랑 HealthMap: Global Infectious Disease Monitoring through Automated Classification and Visualization of Internet Media Reports    
    10 나영지 Inferring MicroRNA Activities by Combining Gene Expression with MicroRNA Target Prediction    
    17 김도균 The pharmacogenetics and pharmacogenomics knowledge base: accentuating the knowledge    
    17 변상재 Data Mining for Chinese Materia Medica and Pharmacological Research    
    24 송영수 Expression of MicroRNAs and Protein-Coding Genes Associated With Perineural Invasion in Prostate Cancer    
    24 조성범 Predicting cancer involvement of genes from heterogeneous data    
    31 정희준 The Mouse Tumor Biology database    
    31 이수연 The microRNA.org resource:targets and expression    

    2008-04:
    05 정희준 SPIKE - a databse, visulization and analysis tool of cellular signaling pathways    
    05 이수연 MicroRNA acuurately identify cancer tissue origin    
    12 박유랑 Epoch: an Ontological Framework to Support Clinical Trials Management    
    12 나영지 Dissecting microregulation of a master regulatory network      
    19 우정훈 The complete genome of an individual by massively parallel DNA sequencing    
    19 김도균 SNPLims: a data management system for genome wide association studies    
    26 변상재 Using formal concept analysis for microarray data comparison 
    26 조성범 WilcoxCV: an R package for fast variable selection in cross validation      
    26 송영수  

    2008-03:
    08 박유랑 Sharing Data and Analytical Resources Securely in a Biomedical Research Grid Environment    
    08 나영지 Systematic functional characterization of cis-regulatory motifs in human core promoters    
    15 우정훈 Predicting expression patterns from regulatory sequence in Drosophila segmentation.      
    15 김도균 Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene    
    22 변상재 A method of microarray data storage using array data type    
    22 강소영 DNA repair gene XRCC3 polymorphisms and cancer risk_ a meta analysis of 48 case control study    
    29 김지훈 NetworkBLAST: Comparative analysis of protein networks    
    29 조성범 Merging microarray data from separate breast cancer studies provides a robust prognostic test    

    2008-02:
    02 김도균 CancerGenes: a gene selection resource for cancer genome projects    
    02 김지훈 PathExpress: a web-based tool to identify relevant pathways in gene expression data    
    16 조성범 Successful anti-cancer drug targets able to pass FDA review demonstrate the identifiable signature distince from the signatures of random genes and initially proposed targets    
    16 정희준 KEGGanim: pathway animations for high-throughput data    
    23 이수연 A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments    
    23 김민구 A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans    

    2008-01:
    05 조성범 From protein microarrays to diagnostic antigen discovery: a study of the pathogen Francisella tularensis      
    05 정희준 Towards zoomable multidimensional maps of the cell 
    12 이수연 Mining co-regulated gene profiles for the detection of functional associations in gene expression data    
    12 박유랑 The BRIDG Project: A Technical Report    
    19 김민구 Novel Integration of Hospital Electronic Medical Records and Gene Expression Measurements to Identify Genetic Markers of Maturation    
    19 나영지 Global and Local Architecture of the Mammalian microRNA-Transcription Factor Regulatory Network    
    26 우정훈 Cis- and Trans- Loci Influence Expression of the Schizophrenia Susceptibility Gene DTNBP1.      
    26 변상재 LOCATE: a mammalian protein subcellular localization database      

    2007-12:
    01 조성범 Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models      
    01 박유랑 Use of SNOMED CT to Represent Clinical Research Data: A Semantic Characterization of Data Items on Case Report Forms in Vasculitis Research    
    08 우정훈 A signature of chromosomal instability inferred from gene expression profiles predicts clinical outcome in multiple human cancers      
    08 나영지 Genomic analysis of human microRNA transcripts      
    15 이수연 Cancer immunomics: Using autoantibody signatures in the early detection of prostate cancer    
    15 김도균 AILUN: reannotating gene expression data automatically    
    22 변상재 BNDB-The Biochemical Network Database    
    22 김지훈 Evaluation of high-throughput functional categorization of human disease genes      

    2007-11:
    03 김지훈 BioCLASS : A semantic comparison of microarray gene expression data 
    03 나영지 Network-based discovery of functional differences between intronic and intergenic miRNAs 
    03 김민구 Sample selection in RiPeter 
    03 정희준 An architecture for biomedical semantic map: an integrated map from biology to clinical 
    03 김도균 An integrated system for heterogeneous data management and analysis 
    17 김도균 DNA, diseases and databases:disastrously deficient    
    17 김지훈 Strategy for encoding and comparison of gene expression signatures      
    24 정희준 PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation      
    24 김민구 Functional Specificity among Ribosomal Proteins Regulates Gene Expression [RiPeter]   

    2007-10:
    06 우정훈 Identifying Genomic Regulators of Set-Wise Co-Expression (presentation for BIBE 2007 ) 
    06 이수연 Feature Selection and Molecular Classification of Cancer Using Genetic Programming    
    13 정희준 Advancing translational research with the Semantic Web 
    13 김민구 A systems biology approach for pathway level analysis    
    20 박유랑 Estimating the annotation error rate of curated GO database sequence annotations.    
    20 조성범 Bayesian modelling of shared gene function      
    27 나영지 MicroRNA regulation of human protein-protein interaction network      
    27 변상재 Annotation and query of tissue microarray data using the NCI Thesaurus      

    2007-09:
    01 이수연 GPDTI A Genetic Programming Decision Tree Induction method to find epistatic effects in common complex diseases    
    01 박지연 Research Talk 
    08 김도균 Challenges and standards in integrating surveys of structural variation [CNV, review]     
    08 김민구 A full Bayesian hierarchical mixture model for the variance of gene differential expression    
    15 나영지 Detection of a MicroRNA Signal in an In Vivo Expression Set of mRNAs      
    15 우정훈 Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution.    
    29 김도균 Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer      
    29 김지훈 Quantitative assessment of relationship between sequence similarity and function similarity    

    2007-08:
    04 우정훈 Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations    
    04 정용 Status of text-mining techniques applied to biomedical text [Text mining, biomedical field]   
    11 박유랑 Cancer Genomics Object Model : An Object Model for Cancer Research using Multiple Functional Genomics Data 
    11 김지훈 A New Method to Measure the Semantic Similarity of GO terms    
    18 조성범 Matrix formalism to describe functional state of trasncriptional regulatory systems    
    18 정희준 Semantic Search among Heterogeneous Biological Databases Based on Gene Ontology [Semantic integration]   

    2007-07:
    07 이수연 maSigPro: a Method to Identify Significantly Differential Expression Profiles in Time-Course Microarray Experiments    
    07 김지훈 Developing a similarity measure in biological function space      
    14 조성범 A genomic code for nucleosome positioning    
    14 정희준 The Gene Set Builder: collation, curation, and distribution of sets of genes [gene set]     
    21 나영지 Evidence of spatially bound gene regulation in Mus musculus: decreased gene expression proximal to microRNA genomic location      
    21 박유랑 Design aspects of a distributed clinical trials information system      
    28 김민구 Integrative molecular concept modeling of prostate cancer progression    
    28 김도균 Genome-wide copy number profiling on high-density bacterial artificial chromosomes, single-nucleotide    

    2007-06:
    02 김지훈 FatiGO and GAzer 
    02 정용 MicroGen: a MIAME compliant web system for microarray experiment information and workflow management [MIAME, microarray, repository]     
    09 정희준 AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data    
    09 박찬희 BioGuideSRS: querying multiple sources with a user-centric perspective    
    16 이수연 Significance analysis of mcroarray transcript levels in time series experiments    
    16 박유랑 Global clinical data interchange standards are here    
    23 김민구 Improving identification of differentially expressed genes in microarray studies using information from public databases    
    23 나영지 microRNA Modulation of Circadian-Clock Period and Entrainment      
    30 우정훈 The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics.      
    30 정용 A UMLS-based spell checker for natural language processing in vaccine safety    

    2007-05:
    12 박유랑 Dynamic Tables: An Architecture for Managing Evolving, Heterogeneous Biomedical Data in Relational Database Management Systems    
    12 나영지 MicroRNA expression alterations are linked to tumorigenesis and non-neoplastic processes in pancreatic ductal adenocarcinoma      
    19 김민구 A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription      
    19 조성범 Bayesian meta-analysis models for microarray data: a comparative study    
    26 김도균 Completing the map of human genetic variation [CNV, structural variation]     
    26 정태수 Discovery of principles of nature from mathematical modeling of DNA microarray data    

    2007-04:
    07 김지훈 Weighted Cohesiveness for Identification of Functional Modules and their Interconnectivity    
    07 정용 ArrayQuest: a web resource for the analysis of DNA microarray data [Microarray data analysis system]   
    14 정희준 cPath    
    14 박찬희 A tutorial on statistical methods for population association studies      
    21 외부특강 BIG-round 
    28 이수연 Modeling Nonlinearity in Dilution Design Microarray Data [microarray, dilution]     
    28 우정훈 Heritability and tissue specificity of expression quantitative trait loci.      

    2007-03:
    03 정희준 Integrating domain knowledge with statistical and data mining methods for high density genomic SNP disease association analysis    
    03 박찬희 High-Throughput Multi-dimensional Scaling (HiT-MDS) for cDNA-Array Expression Data      
    10 이수연 A Five-Gene Signature and Clinical Outcome in Non-Small-Cell Lung Cancer      
    10 나영지 Global analysis of microRNA target gene expression reveals that miRNA targets are lower expressed in mature mouse and Drosophila tissues than in the embryos      
    17 김민구 Large-scale identification of novel transcripts in the human genome      
    17 박유랑 A general temporal data model and the structured population event history register [Temporal model, Metadata]   
    24 우정훈 High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping.      
    24 김도균 Relative impact of nucleotide and copy number variation on gene expression phenotypes [CNV SNP expression]     
    31 조성범 Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian network    
    31 정태수 Not All Scale Free Networks are Born Equal    

    2007-02:
    03 우정훈 Integrating genetic and network analysis to characterize genes related to mouse weight.      
    03 정용 Combination of text-mining algorithms increases the performance [Text mining, combination]     
    10 김도균 Copy number variation: New insights in genome diversity [CNV, copy number variants]     
    10 정태수 Estimating p-values in small microarray experiments [p-value, t-test]     
    24 김지훈 Identifying clusters of functionally related genes in genome      
    24 조성범 Microarray data analysis: from disarray to consolidation and consensus    

    2007-01:
    06 정태수 How Scale-Free Are Biological Networks    
    06 김지훈 Combining functional and topological properties to identify core modules in protein interaction networks      
    13 조성범 Discovering implicit associations between genes and hereditary diseases    
    13 정희준 GenMAPP2.1 
    20 박찬희 ChromoScan: a scan statistic application for identifying chromosomal regions in genomic studies [scan statistics, SNP]     
    20 박유랑 The CAP cancer protocols--a case study of caCORE based data standards implementation to integrate with the Cancer Biomedical Informatics Grid. [caCORE, CAP cancer protocol]     
    27 김민구 Common genetic variants account for differences in gene expression among ethnic groups      
    27 나영지 Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray      

    2006-12:
    02 나영지 Microdeletion encompassing MAPT at chromosome 17q21.3 is associated with developmental delay and learning disability      
    02 조성범 Group testing for pathway analysis improves comparability of different microarray datasets    
    09 정희준  
    09 박찬희 SNiPer-HD: Improved Genotype Calling Accuracy by an Expectation-Maximization Algorithm for High-Density SNP Arrays      
    16 박유랑 Finding function: evaluation methods for functional genomic data.      
    16 김민구 Large scale data mining approach for gene-specific standardization of microarray gene expression data    
    23 나영지 Strategies to determine the biological function of microRNAs      
    23 우정훈 Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits      
    30 정용 Automatic document classification of biological literature [Information Retrieval, Phrase-based Document Clustering, Support Vector Machine]   
    30 김도균 Global variation in copy number in the human genome [CNV]

    2006-11:
    04 김민구 Predicting rules on organization of cis-regulatory elements, taking the order of elements into account      
    04 김지훈 A new measure for functional similarity of gene products based on Gene Ontology [semantic map]     
    11 정태수 Singular value decomposition of genome-scale mRNA length distribution reveals saymmetry in RNA gel electrophoresis band broadening [SVD, asymmetric gaussian]   
    11 김도균 Design of a combinatorial DNA microarray for protein-DNA [PBM]   
    25 정용 AMIA 2006 Review Paper [AMIA, HMM, Text Classification, Ontology]
    25 박유랑 AMIA 2006 review [AMIA, conference review]

    2006-10:
    14 조성범 Discovering disease genes by topological features in human protein-protein interaction network    
    14 정희준 BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.    
    28 박찬희 To permute or not permute [permutation]     
    28 우정훈 Normalization procedures and detection of linkage signal in genetical-genomics experiments.      

    2006-09:
    23 김도균 MGED9 review [MGED]
    23 나영지 Creation and implications of a phenome-genome network      
    30 정태수 Network motif identification in stochastic networks [network motif, stochastic network motif, mixture model]     
    30 김지훈 Assessing semantic similarity measures for the characterization of human regulatory pathways [Semantic distance]     

    2006-07:
    01 조성범 High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome    
    01 정희준 CoPub Mapper: mining MEDLINE based on search term co-publication    
    08 박찬희 A model diagram layout extension for SBML 
    08 온정헌 A Systems Approach to Mapping DNA Damage Response Pathways [DNA damage response pathway]     
    15 김민구 Identification of biochemical networks by S-tree based genetic programming      
    15 나영지 A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies      

    2006-06:
    03 박찬희 Genome-wide analysis of mammalian promoter architecture and evolution 
    03 김민구 Histone acetylation and transcriptional regulation in the genome of Saccharomyces cerevisiae [cca]     
    09 우정훈 An integrative genomics approach to infer causal associations between gene expression and disease [genetical genomics]     
    10 나영지 The model organism as a system:integrating ‘omics’ data sets      
    17 김지훈 From XML to RDF: how semantic web technologies will change the design of omic standards [XML RDF]     
    17 박유랑 A System for Automated Lexical Mapping [LOINC mapping, text mining]     
    24 정용 A text-mining analysis of the human phenome [phenome, text mining, phenotype-genotype relations]     
    24 정태수 Reconstructing the pathways of a cellular system from genome-scale signals by using matrix and tensor computations [pathway, EVD]     

    2006-05:
    06 온정헌 Ab initio genotype–phenotype association reveals intrinsic modularity in genetic networks      
    06 우정훈 Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function. [genetical genomics]     
    13 나영지 Oncogenic pathway signatures in human cancers as a guide to targeted therapies      
    13 정용 Data integration and genomic medicine [genomic, medicine, data integration]     
    20 정태수 Pathway recognition and augmentation by computational analysis of microarray expression data [PathPlus]     
    20 김지훈 A System Based Approach to Interpret Dose and Time-dependent Microarray Data: Quantitative Integration of GO Ontology Analysis for Risk Assessment [microarray]     
    27 조성범 Lung cancer genome analysis with SNP arrays    
    27 정희준 Graph-based analysis and visulization of experimental results with ONDEX    

    2006-04:
    01 우정훈 Genetic regulators of large-scale transcriptional signatures in cancer.      
    01 박유랑 An XML-based System for Synthesis of Data from Disparate Databases    
    08 정용 DrugBank: a comprehensive resource for in silico drug discovery and exploration      
    08 김지훈 Integrated analysis of gene expression by Association Rules Discovery      
    15 조성범 Genome-wide association study in esophageal cancer using GeneChip mapping 10k array    
    15 정희준 CoryneRegNet: An ontology-based data warehouse of corynebacterial transcription factors and regulatory networks    
    22 박찬희 Different methods of calculating gene expression from short oligonucleotide array data will give different results      
    22 온정헌 Uncovering the overlapping community structure of complex networks in nature and society      
    29 박유랑 RxNorm: Prescription for electronic drug information exchange      
    29 김민구 Contributions of low molecule number and chromosomal positioning to stochastic gene expression    

    2006-03:
    04 김지훈 Instance-based concept learning from multiclass DNA microarray data      
    04 조성범 Epistasis analysis with global transcriptional phenotypes      
    11 김민구 Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer      
    18 정태수 A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae      
    18 온정헌 Proteome survey reveals modularity of the yeast cell machinery      
    25 정희준 WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data      
    25 나영지 Functional annotation and network reconstruction through cross-platform integration of microarray data      

    2006-02:
    04 나영지 Finding biological process modifications in cancer tissues by mining gene expression correlations      
    04 김민구 Shifting and scaling patterns from gene expression data      
    11 이혜원 Chemical Effects in Biological Systems (CEBS) object model for toxicology data, SysTox-OM: design and application.      
    11 박유랑 A statistical approach to scanning the biomedical literature for pharmacogenetics knowledge.      
    18 우정훈 Multi-way clustering of microarray data using probabilistic sparse matrix factorization      
    25 정용 Creation and implications of a phenome-genome network      
    25 정태수 Standardizing global gene expression analysis between laboratories and acroos platforms      

    2006-01:
    07 나영지 Comparison of normalization methods for CodeLink Bioarray data      
    07 윤혜성 A protocol for building and evaluting predictors of disease state based on microarray data      
    14 온정헌 A haplotype map of the human genome      
    21 김지훈 Biological profiling of gene groups utilizing gene ontology      

    2005-12:
    24 김민구 Differential coexpression analysis using microarray data and its application to human cancer      
    31 박유랑 Overview of BioCreAtIvE: critical assessment of information extraction for biology      

    2005-11:
    05 우정훈 Statistical methods for ranking differentially expressed genes.      
    05 온정헌 An expression index for Affymetrix GeneChips based on the generalized logarithm      
    12 김민구 Assessing the limits of genomic data integration for predicting protein networks      
    12 김미현 Improving molecular cancer class discovery through sparse non-negative matrix factorization      
    26 나영지 Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed genes in lung cancer tissues      
    26 이혜원 A new algorithm for comparing and visulaizing relationships beween hierarchical and flat gene expression data clusterings      

    2005-10:
    01 김미현 Mining Ratio Rules Via Principal Sparse Non-Negative Matrix Factorization      
    01 나영지 Study of coordinative gene expression at the biological process level      
    08 우정훈 A Theoretical Analysis of Gene Selection      
    08 온정헌 Validation and refinement of gene-regulatory pathways on a network of physical interactions    
    15 김지훈 PAGE: Parametric Analysis of Gene Set Enrichment      
    22 박찬희 Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data      
    22 윤혜성 Mining coherent dense subgraphs across massive biological networks for functional discovery      
    29 정희준 A network-based analysis of systemic inflammation in humans      

    2005-09:
    03 박유랑 Ontological analysis of gene expression data current tools, limitations, and open problems      
    03 정희준 Generalized biological database platform based on cross-referenced tables(XRT)    
    10 조성범 Intergrative analysis of cancer transcriptome    
    10 김민구 Local modeling of global interactome networks      
    24 정태수 Biomarker discovery in microarray gene expression data with Gaussian processes      
    24 윤혜성 Ensemble dependence model for classification and prediction of cancer and normal gene expression data      

    2005-08:
    06 박유랑 Healthcare IT Collaboration in Massachusetts: The Experience of Creating Regional Connectivity      
    06 이혜원 Visualizing information across multidimensional post-genomic structured and textual databases    
    13 나영지 Use of extreme patient samples for outcome prediction from gene expression data      
    13 우정훈 Prediction of Nephrotoxicant Action and Identification of Candidate Toxicity-Related Biomarkers      
    20 김미현 Metagenes and molecular pattern discovery using matrix factorization      
    20 정태수 Alignment of metabolic pathways      
    27 김지훈 Using process diagrams for the graphical representation of biological networks      
    27 박찬희 PhD: a web database application for phenotype data management      

    2005-07:
    02 정태수 Supervised enzyme network inference from the integration of genomic data and chemical information [vert, kernel]     
    02 김민구 A procedure for assessing GO annotation consistency      
    09 박찬희 LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts.      
    09 한미령 The Interactive Online SKY/M-FISH & CGH Database and the Entrez Cancer Chromosomes Search Database: Linkage of Chromosomal Aberrations with the Genome Sequence      
    16 정희준 GoPubMed: exploring PubMed with the Gene Ontology      
    16 조성범 An oncogenic KRAS2 expression signature identified by cross-species gene-expression anlaysis    
    23 김지훈 Comparison of computational methods for the identification of cell cycle-regulated genes      
    23 온정헌 Peeling the yeast protein network.      
    30 한미령 Visualization-based discovery and analysis of genomic aberrations in microarray data      
    30 김옥구 Automated Detection of Adverse Events Using Natural Language Processing of Discharge Summaries      

    2005-06:
    04 조성범 Pattern Robustness of Diagnostic Gene expression Signatures in Leukemia      
    04 김민구 Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments.      
    11 박유랑 Standardization initiatives in the (eco)toxicogenomics domain: a review      
    11 김옥구 Validation of a Discharge Summary Term Search Method to Detect Adverse Events      
    18 김미현 Application of Revised Version of Neural Independent Component Analysis to Classification Problems of Confiscated Methaphetamine      
    25 이혜원 Integration of text- and data-mining using ontologies successfully selects disease gene candidates      
    25 나영지 Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information      

    2005-05:
    07 김미현 Diagnostic plots for detecting outlying slides in a cDNA microarray experiment      
    07 나영지 Modularized learning of genetic interaction networks from biological annotations and mRNA expression data      
    14 정태수 NETWORK BIOLOGY: UNDERSTANDING THE CELL’S FUNCTIONAL ORGANIZATION      
    21 박찬희 RNA expression microarrays (REMs), a high-throughput method to measure differences in gene expression in diverse biological samples      
    28 정희준 GeneWays: a system for extracting, analyzing, visualizing,and integrating molecular pathway data      

    2005-04:
    02 박찬희 GECKO: a complete large-scale gene expression analysis platform      
    16 김민구 Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae      
    30 한미령 Use of Targeted Array-Based CGH for the Clinical Diagnosis of Chromosomal Imbalance: Is Less More?      
    30 박유랑