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2018-03:
05 Allele matcher scoring scheme alterations  TopicSem

2018-02:
10 Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets     J.Club
14 PharmVar database overview  SysBiol
14 PharmVar database overview  SysBiol
14 PharmVar database overview  SysBiol

2018-01:
11 Problems with allele matcher switching from VCF to GVCF  MAInfo
22 Allele matcher fine-tuning and scoring scheme alterations  TopicSem

2017-12:
09 Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension     J.Club
18 NamedAlleleMatcher101 replication  TopicSem

2017-11:
15 Identifying Splicing Synthetic Cancer Survival in Lung Adenocarcinoma using pooled isoform-based method   TopicSem
22 Significantly regulated multi-isoform genes  MAInfo
23 PharmCAT review  SysBiol

2017-10:
18 Identifying Splicing Synthetic Cancer Survival in Lung Adenocarcinoma using isoform-based method  TopicSem
26 Extracting information from PharmGKB  SysBiol

2017-09:
06 Additional Methods of Identifying Splicing Synthetic Cancer Survival in Lung Adenocarcinoma  TopicSem
18 DMET data processing protocol  SysBiol
23 Global profiling of alternative RNA splicing events provides insights into molecular differences between various types of HCC     J.Club
27 Significantly regulated multi-isoform genes  MAInfo

2017-08:
14 Identification of Synthetic Splicing Cancer Survival in Lung Adenocarcinoma  TopicSem

2017-07:
10 Chemotherapy and adverse drug reactions in Acute Myeloid Leukemia   SysBiol
29 Disease variants alter transcription factor levels and methylation of their binding sites     J.Club

2017-06:
12 Roles of Solute Carriers and the functional consequences of polymorphism  SysBiol
14 Calculating ERK score of THCA samples  MAInfo
28 Preliminary miRNA analysis on THCA samples  TopicSem

2017-05:
01 Roles of ATP-Binding Cassette transporters and the functional consequences of polymorphism  SysBiol
20 RNA sequence context effects measured in vitro predict in vivo protein binding and regulation     J.Club
24 Further investigation on Synthetic Splicing Cancer Survival pairs in Lung Adenocarcinoma  TopicSem

2017-04:
05 Isoform fraction analysis methodology  MAInfo
17 Isoform fraction analysis in THCA  TopicSem

2017-03:
04 WT U2AF1 Antagonizes the Splicing Program Characteristic of U2AF1 mutant tumors     J.Club
13 Identification of synthetic aberrant splicing event pairs using pairwise survival analysis in colorectal cancer  TopicSem
27 Effects of variants in transporter genes on drug efficacy and toxicity   SysBiol

2017-02:
08 Converting GDC UUID to TCGA barcode  MAInfo
23 Effects of variants in transporter genes on drug efficacy and toxicity  SysBiol

2017-01:
18 Identification of alternative splicing event pairs and their effects on survival using pairwise survival analysis  TopicSem

2016-12:
03 Cancer associated SF3B1 mutatnts recognize otherwise inaccessible cryptic 3 splice sites within RNA secondary structures     J.Club
14 Methodology for identifying the effects of alternative splicing events on survival using pairwise survival analysiso  TopicSem
14 Comparing SURVIV results with results from paper  MAInfo
26 SFINX database  SysBiol
30 Identification of prognostic aberrant splicing event pairs using pairwise survival analysis in invasive breast cancer patients  Seminar

2016-11:
07 Survival analysis of mNA isoform variation using TCGA datai  TopicSem
14 DMET data processing protocol  SysBiol

2016-10:
03 SFINX database  SysBiol
19 Taking rMATS output files and plotting aligned exon read densities using Sashimi plot  MAInfo

2016-09:
21 Methods for assessing effects of variants on alternative splicing and disease  TopicSem

2016-08:
03 Motif analysis of RNA-binding proteins in papillary thyroid carcinoma samples  TopicSem
15 Exome Sequencing Project  SysBiol
19 PharmPortal_A Personal Pharmacogenomics Knowledgebase  Seminar
24 Manually calculating pentamer motif enrichment in RAS-mutated samples  MAInfo
27 Determination of a Comprehensive Alternative Splicing Regulatory Network and Combinatorial Regulation by Key Factors during EMT     J.Club

2016-07:
16 Identification of important lncRNAs and highly recurrent aberrant alternative splicing events in HCC through integrative analysis of multiple RNA Seq datasets     J.Club

2016-06:
27 Therapeutic Targets Database review  SysBiol
29 Introduction of SUPPA and comparison between alternative splicing analysis tools  TopicSem
30 Manually calculating PSI values using junction quantification data  MAInfo

2016-05:
09 [Review] DSigDB  SysBiol
13 [Review] Identification of highly recurrent aberrant alternative splicing events in HCC through integrative RNAseq analysis  MAInfo
23 BRAF/RAS intron retention comparison using MISO  TopicSem

2016-04:
18 BRAF/RAS intron retention comparison using MISO  TopicSem
23 Intron retention is a widespread mechanism of tumor-suppressor inactivation     J.Club

2016-03:
09 Testing PharmPortal drug sets for validity  TopicSem
21 DrugBank XML structures and parsing  SysBiol
21 DrugBank XML structures and parsing  SysBiol
25 MISO pilot results  MAInfo

2016-02:
11 MISO review  MAInfo
13 Identifying adverse drug reactions and drug-induced diseases using network-based drug mapping     J.Club

2016-01:
05 PharmPortal Updated Database Schema  SysBiol
20 Updated Database and Fine-tuning plans  TopicSem
26 PharmSafe Report calculations  SysBiol

2015-12:
21 PharmPortal Updates  TopicSem
22 Fine-tuning plans  SysBiol

2015-11:
18 PharmPortal update  TopicSem
28 DGIdb 2.0: mining clinically relevant drug-gene interactions     J.Club

2015-10:
12 Summary Page Development for PharmPortal  TopicSem

2015-09:
05 Achieving high-sensitivity for clinical applications using augmented exome sequencing     J.Club
14 PharmPortal: Core Function Development on the Web  TopicSem

2015-08:
04 Core functions of PharmPortal  SysBiol

2015-07:
22 PharmPortal: Request Processing Flow  TopicSem

2015-06:
15 PharmPortal: Updated Web design  TopicSem
20 DSigDB: Drug Signatures Database for Gene Set Analysis     J.Club

2015-05:
18 PharmPortal: Data integration and Web Design  TopicSem

2015-04:
04 SFINX - a drug-drug interaction database designed for clinical decision support systems     J.Club
13 PharmPortal: ADR information extraction & integration  TopicSem

2015-03:
11 PharmPortal: Drug Information database parsing  TopicSem

2015-01:
17 In silico comparative characterization of pharmacogenomic missense variants     J.Club
26 Pharmportal: pharmacogenomic database integration  TopicSem
26 SG09     Seminar

2014-12:
10 Imputation of KARE data  TopicSem

2014-11:
05 Drug-Causal Variant Relationship Identification  TopicSem
05 SG09 Interpretation  Seminar
11 DMET data processing protocol  SysBiol
11 DMET data processing protocol  SysBiol
11 DMET data processing protocol  SysBiol
11 DMET data processing protocol  SysBiol
15 An empirical estimate of carrier frequencies for 400+ causal Mendelian variants: results from an ethnically diverse clinical sample of 23,453 individuals     J.Club

2014-10:
01 Identifying the effect of a variant within transporter to drug efficacy  TopicSem

2014-09:
18 Drug Transporters in Drug Efficacy and Toxicity Review  SysBiol
18 Drug Transporters in Drug Efficacy and Toxicity Review  SysBiol
18 Drug Transporters in Drug Efficacy and Toxicity Review  SysBiol

2014-08:
12 Therapeutic Targets Database review  SysBiol

2014-07:
02 An analysis protocol for Ion Proton sequencing data at low level  xMutant

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