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2009-03:
02 Finding subsets of microRNA and mRNA using GA  Seminar
19 Finding subsets of microRNA and mRNA using GA II  Seminar
21 Gene expression trends and protein features effectively complement each other in gene function prediction     J.Club

2009-02:
16 Set-wise differential coexpression of mRNA and microRNA  Seminar
21 Human microRNAs co-silence in well-separated groups and have different predicted essentialities     J.Club

2009-01:
08 Time series analysis with multivariate t test  Seminar
10 Identification of transcription factor and microRNA binding sites in responsible to fetal alcohol syndrome     J.Club
22 Analysis of chronic GVHD microarray data  Seminar

2008-12:
01 Power estimation of Hotelling, Cramer and PCT  Seminar
06 Gene Expression in Fixed Tissues and Outcome in Hepatocellular Carcinoma     J.Club
22 Simulation test on PCT, Cramer and Hotelling test  Seminar

2008-11:
08 Network-based global inference of human disease genes     J.Club
10 Analysis of chronic GVHD microarray data using ICA  Seminar
24 Pathway-based classification analysis of breast cancer microarray data  Seminar

2008-10:
06 The pooled component test: a variant of Hotelling test  Seminar
23 Pooled component test with permutation  Seminar

2008-09:
18 Comparison of informative pathways  Seminar
27 Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data     J.Club

2008-08:
18 Breast Cancer Data Analysis using boostKDBC-III  Seminar
23 SIRENE: supervised inference of regulatory networks     J.Club
28 Re-anlaysis of boostKDBC simulation data  Seminar

2008-07:
03 Breast cancer data analysis using boostKDBC  Seminar
14 Comparative Study on Multivariate T test     Seminar
19 Nucleosome positioning from tiling microarray data     J.Club
28 Analysis of Breast Cancer Data Set using boostKDBC     Seminar

2008-06:
16 Re-anlaysis of boostKDBC benchmark data  Seminar
21 Computational epigenetics     J.Club

2008-05:
09 Optimization of SVM in pathway-based classification  Seminar
24 Predicting cancer involvement of genes from heterogeneous data     J.Club
30 Simulation study on boostKDBC, random forest and SVM  Seminar

2008-04:
07 Prediction of GVHD status with donor-patient microarray data  Seminar
21 Simulation study on interaction score  Seminar
26 WilcoxCV: an R package for fast variable selection in cross validation       J.Club

2008-03:
03 Power comparison between ordinary and bootstrapped Hotelling test  Seminar
21 Monte Carlo based power test  Seminar
29 Merging microarray data from separate breast cancer studies provides a robust prognostic test     J.Club

2008-02:
15 Boostrapping Multivariate test  Seminar
16 Successful anti-cancer drug targets able to pass FDA review demonstrate the identifiable signature distince from the signatures of random genes and initially proposed targets     J.Club

2008-01:
05 From protein microarrays to diagnostic antigen discovery: a study of the pathogen Francisella tularensis       J.Club
18 Analysis results of lung cancer data with deCorS  Seminar

2007-12:
01 Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models       J.Club
07 Simulation data analysis with deCorS  Seminar
21 Result of DM data analysis with deCorS  Seminar
28 Pathway classification analysis using BoostKDBC  Seminar

2007-11:
02 Summary of BoostKBC results  Seminar
20 Analysis of gene set interaction network structure using SEM  Seminar

2007-10:
20 Bayesian modelling of shared gene function       J.Club
23 Application of simulation data to BoostKBC  Seminar

2007-09:
07 BoostKBC with pathway infomation III  Seminar
28 Feature selection in BoostKBC  Seminar

2007-08:
03 BoostKBC with pathway infomation  Seminar
18 Matrix formalism to describe functional state of trasncriptional regulatory systems     J.Club
22 BoostKBC with pathway infomation II  Seminar

2007-07:
04 Updating with sigmoid function in boost KDC  Seminar
14 A genomic code for nucleosome positioning     J.Club
18 BoostKBC with prior information  Seminar

2007-06:
08 Boosting KBC  Seminar

2007-05:
04 Effect of correlation structure on the classification performance  Seminar
19 Bayesian meta-analysis models for microarray data: a comparative study     J.Club
23 Boosting Kernel Bayesian Classifier  Seminar

2007-04:
13 Pathway based classification  Seminar

2007-03:
02 Revision of GSIA and application to the toxicology data II  Seminar
23 Application of GSIA to the tetracycline data set  Seminar
31 Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian network     J.Club

2007-02:
07 Revision of GSIA & Application to the Toxicology Data  Seminar
24 Microarray data analysis: from disarray to consolidation and consensus     J.Club

2007-01:
13 Discovering implicit associations between genes and hereditary diseases     J.Club
17 Application of GSIA to the mouse BXD data set  Seminar

2006-12:
02 Group testing for pathway analysis improves comparability of different microarray datasets     J.Club
06 Prediction of clinical status with array CGH data  Seminar
27 Classification of array CGH data with Naive Bayes & mixture model  Seminar

2006-11:
10 Interpretation of gene set interaction analysis  Seminar

2006-10:
14 Discovering disease genes by topological features in human protein-protein interaction network     J.Club
20 Gene set interaction analysis [Mantel testgene set interaction] Seminar

2006-07:
01 High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome     J.Club

2006-06:
16 Interpretation of Mantel test  MAInfo
21 Mantel test with different data sets  xMutant

2006-05:
12 Mantel test with pathway gene set II  MAInfo
15 SNP Chip analysis  Seminar
24 Mantel test with weighted correlation  xMutant
27 Lung cancer genome analysis with SNP arrays     J.Club

2006-04:
05 Mantel test between gene sets  xMutant
15 Genome-wide association study in esophageal cancer using GeneChip mapping 10k array     J.Club
24 SNP Chip Analysis  Seminar
26 Mantel test with pathway gene set  xMutant

2006-03:
04 Epistasis analysis with global transcriptional phenotypes       J.Club
15 Integration of Mantel test & MDR algorithm  xMutant
31 Selection of gene subset with MDR algorithm in Mantel test  MAInfo

2006-02:
01 Analysis of Human Cancer Microarray Data with Clinical Information; application of Mantel statistics with combination of clinical variables  MAInfo
07 BMT data analysis  xMutant
22 Mantel test with gene set  MAInfo
27 Research Plan  Seminar

2006-01:
03 Result of the survival analysis of liver cancer microarray data  xMutant
11 Microarray data analysis of human cancers with clinical information; application of Mantel statistics  MAInfo

2005-12:
06 Survival analysis of liver cancer microarray data  xMutant
12 Research Plan  Seminar
21 Microarray data analysis of human cancers with clinical stage information  MAInfo

2005-11:
09 Pathway-based microarray analysis; results with different data sets  MAInfo
22 Survival analysis of liver cancer microarray data  xMutant
30 Comparison of gene expression profiling between different clinical stages  MAInfo

2005-10:
19 Microarray analysis with multple pathways  MAInfo
25 Survival analysis of liver cancer data  xMutant

2005-09:
05 "gsea, global test and classification for microarray data"  Seminar
10 Intergrative analysis of cancer transcriptome     J.Club
13 Analysis of Hapatocellular Carcinoma Data  xMutant
28 Tumor microarray classification using clinical information  MAInfo

2005-08:
03 Plan for knowledge based microarray analysis  MAInfo
16 GSEA(gene set enrichment analysis) package  xMutant
31 GSEA & Naive Bayes  MAInfo

2005-07:
04 Identification of Pathways related to the Clinical Outcome of the Microarray data using Global Test [AppGen] Seminar
13 Pathway based tumor classification  MAInfo
16 An oncogenic KRAS2 expression signature identified by cross-species gene-expression anlaysis     J.Club
26 Identification of Pathways related to Pathologic Status in Lung cancer using Global Test  xMutant

2005-06:
04 Pattern Robustness of Diagnostic Gene expression Signatures in Leukemia       J.Club
22 Microarray Analysis using Prior Biologic Knowledge  MAInfo
28 Identification of Pathways related to the lymph node metastasis in lung cancer using Global test  xMutant

2005-05:
03 Identification of Pathway related to the Clinical Outcome within Microarray data using Global Test  xMutant
04 The Detection of Outlier Cases with Deviation of Logistic Regression Analysis  MAInfo
31 Identification of pathways related to the pathologic status of squamous cell carcinoma of uterine cervix using global test  xMutant

2005-04:
13 Analysis of microarray data of lung and cervical cancer  MAInfo

2005-03:
16 The Analysis of cervical cancer microarray data -II  MAInfo
28 Analysis of squamous cell carcinoma microarray data [MAInfo] Seminar

2005-02:
16 Analysis of Cervix Cancer Microarray Data  MAInfo
21 Molecular decomposition of complex clinical phenotypes using biological structured analysis of microarray data       J.Club
25 Analysis of gastric cancer tissue microarray data  xMutant

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