16 | Set-wise differential coexpression of mRNA and microRNA | Seminar | ||
21 | Human microRNAs co-silence in well-separated groups and have different predicted essentialities | J.Club |
06 | The pooled component test: a variant of Hotelling test | Seminar | ||
23 | Pooled component test with permutation | Seminar |
18 | Comparison of informative pathways | Seminar | ||
27 | Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data | J.Club |
18 | Breast Cancer Data Analysis using boostKDBC-III | Seminar | ||
23 | SIRENE: supervised inference of regulatory networks | J.Club | ||
28 | Re-anlaysis of boostKDBC simulation data | Seminar |
16 | Re-anlaysis of boostKDBC benchmark data | Seminar | ||
21 | Computational epigenetics | J.Club |
09 | Optimization of SVM in pathway-based classification | Seminar | ||
24 | Predicting cancer involvement of genes from heterogeneous data | J.Club | ||
30 | Simulation study on boostKDBC, random forest and SVM | Seminar |
05 | From protein microarrays to diagnostic antigen discovery: a study of the pathogen Francisella tularensis | J.Club | ||
18 | Analysis results of lung cancer data with deCorS | Seminar |
02 | Summary of BoostKBC results | Seminar | ||
20 | Analysis of gene set interaction network structure using SEM | Seminar |
20 | Bayesian modelling of shared gene function | J.Club | ||
23 | Application of simulation data to BoostKBC | Seminar |
07 | BoostKBC with pathway infomation III | Seminar | ||
28 | Feature selection in BoostKBC | Seminar |
03 | BoostKBC with pathway infomation | Seminar | ||
18 | Matrix formalism to describe functional state of trasncriptional regulatory systems | J.Club | ||
22 | BoostKBC with pathway infomation II | Seminar |
04 | Updating with sigmoid function in boost KDC | Seminar | ||
14 | A genomic code for nucleosome positioning | J.Club | ||
18 | BoostKBC with prior information | Seminar |
08 | Boosting KBC | Seminar |
13 | Pathway based classification | Seminar |
07 | Revision of GSIA & Application to the Toxicology Data | Seminar | ||
24 | Microarray data analysis: from disarray to consolidation and consensus | J.Club |
13 | Discovering implicit associations between genes and hereditary diseases | J.Club | ||
17 | Application of GSIA to the mouse BXD data set | Seminar |
10 | Interpretation of gene set interaction analysis | Seminar |
14 | Discovering disease genes by topological features in human protein-protein interaction network | J.Club | ||
20 | Gene set interaction analysis [Mantel test, gene set interaction] | Seminar |
01 | High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome | J.Club |
16 | Interpretation of Mantel test | MAInfo | ||
21 | Mantel test with different data sets | xMutant |
12 | Mantel test with pathway gene set II | MAInfo | ||
15 | SNP Chip analysis | Seminar | ||
24 | Mantel test with weighted correlation | xMutant | ||
27 | Lung cancer genome analysis with SNP arrays | J.Club |
04 | Epistasis analysis with global transcriptional phenotypes | J.Club | ||
15 | Integration of Mantel test & MDR algorithm | xMutant | ||
31 | Selection of gene subset with MDR algorithm in Mantel test | MAInfo |
03 | Result of the survival analysis of liver cancer microarray data | xMutant | ||
11 | Microarray data analysis of human cancers with clinical information; application of Mantel statistics | MAInfo |
06 | Survival analysis of liver cancer microarray data | xMutant | ||
12 | Research Plan | Seminar | ||
21 | Microarray data analysis of human cancers with clinical stage information | MAInfo |
09 | Pathway-based microarray analysis; results with different data sets | MAInfo | ||
22 | Survival analysis of liver cancer microarray data | xMutant | ||
30 | Comparison of gene expression profiling between different clinical stages | MAInfo |
19 | Microarray analysis with multple pathways | MAInfo | ||
25 | Survival analysis of liver cancer data | xMutant |
03 | Plan for knowledge based microarray analysis | MAInfo | ||
16 | GSEA(gene set enrichment analysis) package | xMutant | ||
31 | GSEA & Naive Bayes | MAInfo |
04 | Identification of Pathways related to the Clinical Outcome of the Microarray data using Global Test [AppGen] | Seminar | ||
13 | Pathway based tumor classification | MAInfo | ||
16 | An oncogenic KRAS2 expression signature identified by cross-species gene-expression anlaysis | J.Club | ||
26 | Identification of Pathways related to Pathologic Status in Lung cancer using Global Test | xMutant |
13 | Analysis of microarray data of lung and cervical cancer | MAInfo |
16 | The Analysis of cervical cancer microarray data -II | MAInfo | ||
28 | Analysis of squamous cell carcinoma microarray data [MAInfo] | Seminar |