12 | Health Avatar Platform: a personalized healthcare service platform for interacting healthcare agents and health avatar | Seminar |
24 | PROMISCUOUS: a database for network-based drug-repositioning | J.Club |
29 | PREDICT: a method for inferring novel drug indications with application to personalized medicine. | J.Club |
07 | Personal genome sequencing platform | Seminar |
22 | Microarray Data Analysis | TopicSem | ||
24 | Sequence data analysis | TopicSem | ||
27 | Discovery and preclinical validation of drug indications using compendia of public gene expression data | J.Club |
16 | Gene-Disease Network Analysis Reveals Functional Modules in Mendelian, Complex and Environmental Diseases | J.Club |
28 | CCancer a birds eye view on gene lists reported in cancer-related studies | J.Club |
25 | paper review about COSMIC, Oncomine | SysBiol |
12 | Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation | J.Club |
05 | Contents for AXP | TopicSem | ||
26 | Contents and introduction | TopicSem | ||
31 | Contents | TopicSem |
03 | MetaPath: a pathway extension from gene lists using literature | TopicSem | ||
15 | Flow chat for AXP analysis | Seminar | ||
24 | Concept of AXP | SysBiol | ||
29 | System architecture and analysis flow for AXP | Seminar |
08 | MetaPath: case study of GBM | TopicSem |
16 | purpose of each search method in pathway tools | Seminar | ||
28 | PathText: a text mining integrator for biological pathway visualizations | J.Club |
01 | summary | SysBiol | ||
05 | PathTest | Seminar | ||
17 | MADNet: microarray database network web server | J.Club | ||
29 | MetaPath: an integrated pathway database enable to search biomedical context | TopicSem |
03 | AXPIII | SysBiol | ||
07 | Parsing pathway data: syntactic integration | Seminar | ||
10 | Organization of AXP concept | SysBiol |
03 | Item for AXP III | Seminar | ||
29 | A Pathway-Based View of Human Diseases and Disease Relationships | J.Club |
17 | HPD: an online integrated human pathway database enabling systems biology studies | J.Club | ||
19 | Define AXP pathways and integrated methods | Seminar |
06 | PID: the Pathway Interaction Database | J.Club | ||
15 | Pathway classification and pathway model | Seminar |
11 | ArrayXPath III: summary concepts and plan | Seminar | ||
15 | Network analysis | SysBiol | ||
18 | Plan and summary ArrayXPath sub systems | Seminar | ||
30 | PathCase: pathways database system | J.Club |
05 | MetaPath: Introduction (2) | Seminar | ||
21 | MetaPath: introduction and concept | Seminar | ||
24 | KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database | J.Club |
10 | MetaPath: ǥ XML 2 | Seminar | ||
27 | MetaPath: ǥ 3 | Seminar |
09 | Medusa: a simple tool for interaction graph analysis and STRING database | J.Club | ||
13 | Clinical Uses of Microarrays in Cancer Research | BookReading | ||
14 | CelMAP: | Seminar |
09 | CelMAP: progress - pathway case study(3) | Seminar | ||
27 | Case study: modify original pathway using protein subcellular prediction algorithm | Seminar |
02 | CelMAP: progress - ߰ | Seminar | ||
19 | CelMAP: progress - select case study | Seminar | ||
28 | PathExpress: a web-based tool to identify relevant pathways in gene expression data | J.Club |
12 | CelMAP: progress - search literature | Seminar | ||
21 | An integrative approach for biological data mining and visualization | J.Club |
01 | CelMAP: progress - sum algorithm result | Seminar | ||
15 | CelMAP: progress | Seminar |
06 | CelMAP: Progress | Seminar | ||
08 | A global pathway crosstalk network | J.Club | ||
24 | CellMAP: an integrated pathways map using cellular location | Seminar |
02 | CelMAP: progress | Seminar | ||
20 | CelMAP: progress | Seminar |
11 | CelMAP: input list for protein predection algorithm | Seminar | ||
27 | Reconstructing networks of pathways via significance analysis of their intersections. | J.Club |
14 | CC2Gene: a re-annotation and gene-centric integration for GPL | Seminar | ||
31 | CelMAP: Progress | Seminar |
16 | CelMAP: perform protein localization algorithm | Seminar | ||
28 | Use and miuse of the gene ontology annotations | J.Club | ||
30 | Seminar |
14 | PID example | Seminar |
15 | pathway database update | Seminar | ||
16 | KEGGanim: pathway animations for high-throughput data | J.Club | ||
29 | Pathway update | Seminar |
04 | Update pathwya database | Seminar | ||
05 | Towards zoomable multidimensional maps of the cell | J.Club | ||
18 | update pathway database | Seminar |
04 | ArrayXPath: Database update | Seminar | ||
28 | CeLMAP: integrated pathways map using cellular location information | Seminar |
12 | Sematic integration (My approach) | Seminar | ||
13 | Advancing translational research with the Semantic Web | J.Club | ||
26 | Semantic integration (refine idea) | Seminar |
05 | Semantic integration | Seminar | ||
21 | Semantic integration | Seminar |
01 | GPL probes matcher | Seminar | ||
18 | Semantic Search among Heterogeneous Biological Databases Based on Gene Ontology [Semantic integration] | J.Club | ||
22 | Sematic integration | Seminar |
14 | The Gene Set Builder: collation, curation, and distribution of sets of genes [gene set] | J.Club | ||
18 | Progress of Gene mapping | Seminar |
09 | AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data | J.Club | ||
13 | Gene mapping progress in GPL | Seminar | ||
29 | Gene mapping in GPL porgresws | Seminar |
07 | Gene Mapping in GPL (progress) | Seminar | ||
23 | Gene mapping in GPL using new relation table of new GRIP | Seminar |
11 | Gene mapping | Seminar | ||
14 | cPath | J.Club |
07 | CC2Ppath: | Seminar |
12 | CC2Path: import GPL | Seminar | ||
13 | GenMAPP2.1 | J.Club |
01 | Seminar | |||
09 | J.Club | |||
29 | integration of pathway and GO | Seminar |
10 | Pathwya Map | Seminar |
14 | BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. | J.Club | ||
20 | Pathway map | Seminar |
01 | CoPub Mapper: mining MEDLINE based on search term co-publication | J.Club | ||
06 | ArrayXPath: map on homologene | SysBiol |
05 | Review pathway systems | Seminar | ||
08 | CellMAP progrerss | SysBiol | ||
12 | GEO localization | Seminar | ||
21 | CC2Path: GEO localization (Step 1) | xMutant |
09 | PathMeSH + miRNA progress | SysBiol | ||
15 | PahtMeSH + miRNA progress | xMutant | ||
25 | WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data | J.Club |
14 | PathMeSH+miRNA | xMutant |
10 | PathMeSH: gene-centric pathway view | xMutant | ||
13 | ArrayXPathIII: Implementation of Mutual Information | SysBiol |
12 | ArrayXPath-III and ArrayXPath-Homolog: .. | Seminar | ||
13 | Association between disease and pathway | xMutant | ||
23 | ArrayXPathIII: localize KEGG pathways using KEGG API | SysBiol |
25 | Plan for ArrayXPath and add a function | SysBiol |
10 | PathTalk [PathTalk] | Seminar | ||
18 | PathMeSH | xMutant | ||
28 | Idea for ArrayXPath III | SysBiol | ||
29 | A network-based analysis of systemic inflammation in humans | J.Club |
03 | Generalized biological database platform based on cross-referenced tables(XRT) | J.Club | ||
09 | Frame work of GRIP | SysBiol | ||
13 | Construction of GRIP | xMutant | ||
30 | Idea of pathway merge | SysBiol |
16 | Summary of CC2Path | xMutant | ||
19 | newGRIP manuscript | SysBiol |
10 | Summary GRIP concept for manuscript | SysBiol | ||
21 | PathTalks: the fourth step [PathTalk] | xMutant |
06 | Item sets for newGRIP | SysBiol | ||
24 | PathTalk: the third step [PathTalk] | xMutant | ||
28 | GeneWays: a system for extracting, analyzing, visualizing,and integrating molecular pathway data | J.Club |
01 | PathCross: the first step | SysBiol | ||
26 | PathTalk: the second step [PathTalk] | xMutant |
03 | Manuscript for AXP 2.0 | SysBiol | ||
12 | Review ArrayXPath [AppGen] | Seminar | ||
22 | MapGO progress | xMutant |
13 | The development present status of ArrayXPath 2.0 | SysBiol | ||
21 | NA | xMutant | ||
27 | Strategy for ArrayXPath | SysBiol |
02 | ArrayXPath plan for NGIC project | SysBiol | ||
03 | GOFCA- apply cell cycle data and liver cancer data - | xMutant | ||
23 | Items of ArrayXPath 2.0 | SysBiol | ||
31 | NA | xMutant |
01 | Clustering Analysis using FCA | xMutant | ||
11 | PathMesh: database of pathway and drug related disease | Seminar |
04 | TRANSFAC, TRANSPATH and CYTOMER as starting points for an ontology of regulatory networks | J.Club | ||
23 | PathMesh - Writing manuscript - | SysBiol |
31 | J.Club |
06 | Mapping between the Disease Names of OMIM and MeSH [ClinInfo] | Seminar |
26 | TRMP: A Dataqbase of Therapeutically Relevant Multiple-Pathways | J.Club | ||
29 | Database of Association between disease and pathway [Grip] | Seminar |
20 | The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface | J.Club |
28 | Computational knowledge integration in biopharmaceutical research | J.Club |
03 | GenePublisher: Automated analysis of DNA microarray data | J.Club |
22 | PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis | J.Club |
04 | Pathways database system: an integrated system for biological pathways | J.Club |
16 | Global functional profiling of gene expression | J.Club |