SNUBI Research ::   (181 talks satisfying Presenter = 김도균)
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2013-02:
04 김도균 Knowledge bootstrapping: A graph-based integration with multi-omics data and genomic knowledge  Seminar
09 김도균 ATHENA A tool for meta-dimensional analysis applied to genotypes and gene expression data to predict HDL cholesterol levels     J.Club

2013-01:
16 김도균 Knowledge bootstrapping: A graph-based integration with multi-omics data and genomic knowledge  TopicSem

2012-12:
24 김도균 Graph- and kernel-based integrative analyses of multi-layers of heterogeneous genomic data (학위논문 보완사항)  TopicSem
29 김도균 PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations     J.Club

2012-11:
03 김도균 PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis     J.Club
21 김도균 Review on Postdoc Interview  TopicSem

2012-10:
17 김도균 Comparison between kernel-based integration and graph-based integration  TopicSem

2012-09:
01 김도균 Comprehensivemolecular characterization of human colon and rectal cancer     J.Club
12 김도균 Graph-based integration with gene expression and genomic knowledge (Validation results)  TopicSem

2012-08:
01 김도균 Review on TCGA data  TopicSem

2012-07:
16 김도균 Graph-based integration with heterogeneous genomic data and genomic knowledge  TopicSem

2012-06:
20 김도균 Graph-based integration with heterogeneous genomic data and genomic knowledge  TopicSem
23 김도균 A Mathematical Methodology for Determining the Temporal Order of Pathway Alterations Arising during Gliomagenesis     J.Club

2012-05:
16 김도균 Integration with gene expression and TF relation  TopicSem
25 김도균 Graph based integration with genomic data and genomic knowledge  Seminar

2012-04:
02 김도균 Graph-based integration with heterogeneous genomic data and genomic knowledge  TopicSem
07 김도균 Mutual exclusivity analysis identifies oncogenic network modules     J.Club
25 김도균 Graph-based integration with heterogeneous genomic data and genomic knowledge  TopicSem

2012-03:
14 김도균 Knowledge enhancement through intronic miRNAs and target gene information for clinical outcome prediction  TopicSem
15 김도균 Summary on TCGA data  MAInfo

2012-02:
08 김도균 Similarity measure using segmentation of copy number data  TopicSem
25 김도균 Association of BRCA1 and BRCA2 mutations with survival, chemotherapy sensitivity, and gene mutator phenotype in patients with ovarian cancer     J.Club

2012-01:
07 김도균 Integrative network analysis to identify aberrant pathway networks in ovarian cancer     J.Club
09 김도균 Segmentation of copy number data as an input for graph-based SSL  TopicSem

2011-12:
12 김도균 Integration genomic data and genomic knowledge for cancer clinical outcome prediction  TopicSem
28 김도균 Peter Kang from Standford Univ.  Seminar

2011-11:
09 김도균 Integration genomic data and genomic knowledge for cancer clinical outcome prediction  TopicSem
19 김도균 Time to recurrence and survival in serous ovarian tumors predicted from integrated genomic profiles     J.Club

2011-10:
13 김도균 Interpretation of Structural Variation  Seminar
19 김도균 Integration genomic data and genomic knowledge for cancer clinical outcome prediction   TopicSem

2011-09:
07 김도균 Ancestry, Social network application  Seminar
17 김도균 A development taxonomy of GBM defined and maintained by microRNAs     J.Club
26 김도균 Intra-relation Reconstruction from Inter-relation: miRNA to Gene Expression  TopicSem

2011-08:
06 김도균 A ten-microRNA expression signature predicts survival in glioblastoma     J.Club
22 김도균 GSEA and Survival analysis  TopicSem
25 김도균 CNV Data Analysis  TopicSem
25 김도균 SNP database  TopicSem

2011-07:
04 김도균 Network Biology & Medicine 팀 발표  TopicSem
20 김도균 Graph reconstruction from inter-relationship information between miRNA and gene expression  TopicSem
27 김도균 Graph and kernel-based integrative analyses of multi-layers of heterogeneous genomic data  TopicSem

2011-06:
20 김도균 How to measure inter-relationship between different layers of genomic data? [Progress in miRNA-gene expression data]   TopicSem
25 김도균 Correlation of somatic mutation and expression identifies genes important in human glioblastoma progression and survival     J.Club

2011-05:
02 김도균 What is TCGA?  xMutant
02 김도균 How to measure inter-relationship between different layers of genomic data? [Progress in miRNA-gene expression data]  TopicSem
09 김도균 Brainstorming on Integrative Genome Informatics (Research Topics from each member)  xMutant
23 김도균 How to measure inter-relationship between different layers of genomic data? [Progress in miRNA-gene expression data]   TopicSem
23 김도균 Brainstorming on Network biology and medicine  xMutant

2011-04:
11 김도균 How to measure inter-relationship between sample features belonging to different layers of genomic data?  TopicSem
16 김도균 Detecting Cancer Gene Networks Characterized by Recurrent Genomic Alterations in a Population     J.Club
18 김도균 Brainstroming on integrative genome informatics  xMutant
25 김도균 Brainstorming on Integrative Genome Informatics  xMutant

2011-03:
21 김도균 Review on the submitted paper to ISMB 2011  TopicSem

2011-02:
21 김도균 Plan for integration with inter-relationship between sample features belonging to different layers of genomic data  TopicSem
26 김도균 CNAmet_an R package for integrating copy number, methylation and expression data     J.Club

2011-01:
29 김도균 Large scale data integration framework provides a comprehensive view on glioblastoma multiforme     J.Club

2010-11:
22 김도균 Review on genomic rearrangement in cancer  Seminar

2010-10:
04 김도균 Summary on TCGA data  Seminar
30 김도균 An integrative mutidimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer     J.Club

2010-09:
11 김도균 Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis     J.Club

2010-07:
24 김도균 Improved Microarray-Based Decision Support with Graph Encoded Interactome Data     J.Club

2010-06:
12 김도균 International network of cancer genome projects     J.Club

2010-05:
01 김도균 IntOGen: integration and data mining of multidimensional oncogenomic data     J.Club

2010-03:
27 김도균 Integration of clinical and microarray data with kernel methods     J.Club

2010-02:
20 김도균 Prediction of Human Functional Genetic Networks from Heterogeneous Data Using RVM-Based Ensemble Learning     J.Club

2010-01:
16 김도균 A statistical framework for genomic data fusion     J.Club

2009-12:
05 김도균 Exome sequencing identifies the cause of a mendelian disorder     J.Club
30 김도균 A graph-based integration of multidimensional cancer genomics data  Seminar

2009-11:
02 김도균 Integration of multidimensional genomic data (Databasing TCGA data)  Seminar
07 김도균 A kernel based integration of genome wide data for clinical decision support     J.Club
25 김도균 Insert TCGA data into Xperanto  Seminar

2009-10:
14 김도균 Kernel methods in bioinformatics  Seminar

2009-09:
09 김도균 희귀질환 지식베이스 (GeneTests prototype)  Seminar
26 김도균 Pharmacogenomics 2009 Review  J.Club
30 김도균 희귀질환지식베이스 - Progress  Seminar

2009-08:
03 김도균 희귀질환 지식베이스  Seminar
21 김도균 GeneTests prototype  Seminar
22 김도균 Instrumenting the health care enterprise for discovery research in the genomic era     J.Club

2009-07:
01 김도균 Protein Comparative Sequence Analysis  BookReading
04 김도균 MIMAS 3.0 is a Multiomics Information Management and Annotation System     J.Club
16 김도균 Developing a database for integrative genomics (application in genetical genomics)  Seminar

2009-06:
08 김도균 Integration of multidimensional genomic data: Databasing multiple types of annotations  Seminar
09 김도균 A framework for the integrative analysis of copy number and gene expression profile based on the summarized data sets  TopicSem
10 김도균 Computer-Assisted Reading of DNA Sequences  BookReading
29 김도균 Xperanto-SNP: A web-based integrated management system for genetical genomics (Adding DACE module)  Seminar

2009-05:
07 김도균 Progress in Xperanto-SNP : Genotyping and detecting copy number modules embedded  Seminar
23 김도균 In Vitro Analysis of Integrated Global High-Resolution DNA Methylation Profiling with Genomic Imbalance and Gene Expression in Osteosarcoma     J.Club
25 김도균 Integration of multidimensional genomic data: Schematic overview  Seminar

2009-04:
02 김도균 Upgrade ChromoViz-web: Progress  Seminar
08 김도균 In silico Gene Discovery  BookReading
18 김도균 Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome     J.Club
20 김도균 GeneTests and Orphanet  Seminar

2009-03:
07 김도균 GenomeGraphs: integrated genomic data visualization with R     J.Club
12 김도균 Upgrade ChromoViz-web: progress  Seminar

2009-02:
07 김도균 SIGMA2: A system for the integrative genomic multi-dimensilnal analysis of cancer genomes, epigenomes, and transcriptomes     J.Club
12 김도균 Upgrade ChromoViz-web: Implementation simplified SIGMA2 with advanced GRIP (Refine Idea)  Seminar
23 김도균 Upgrade ChromoViz-web: Replicate SIGMA2  Seminar

2009-01:
12 김도균 Research Plan in 2009  Seminar
19 김도균 Identify co-effects of SNP and CNV on gene expression  Seminar

2008-12:
08 김도균 A framework for integrative analysis of copy number and gene expression profile based on the summarized data sets : progress  Seminar
13 김도균 Genome-wide screening of copy nuber alterations and LOH events in renal cell carcinomas and integration with gene expression profile     J.Club
18 김도균 A framework for integrative analysis of copy number and gene expression profile based on the summarized data sets : progress  Seminar

2008-11:
20 김도균 A framework for integrative analysis of copy number and gene expression profile based on the summarized data sets  Seminar
22 김도균 MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data     J.Club
24 김도균 Advanced Chromoviz-web  Seminar

2008-10:
04 김도균 ECCB 2008 review  J.Club
04 김도균 Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways     J.Club
04 김도균 SIRENE: supervised inference of regulatory networks     J.Club
04 김도균 Clinically driven semi-supervised class discovery in gene expression data     J.Club
13 김도균 Analysis process- Lung and Cervix cancer with Radiation data  Seminar
29 김도균 Advanced ChromoViz-Web  Seminar

2008-09:
04 김도균 Retrieving TCGA data  Seminar
06 김도균 Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma     J.Club
18 김도균 Plan: Advanced ChromoViz-web  Seminar

2008-08:
21 김도균 i2b2 review  Seminar

2008-07:
10 김도균 Integrative studies for SNPs and CNVs with gene expression data  Seminar
12 김도균 SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels  J.Club
14 김도균 Integrative studies for SNPs and CNVs with gene expression data  Seminar
24 김도균 HapMap 사용 및 KPRN SNP DB 소개  Seminar

2008-06:
09 김도균 Xperanto-SNP draft  Seminar
14 김도균 SNP@Promoter: a database of human SNPs (Single Nucleotide     J.Club
23 김도균 Integrated association studies for SNPs and CNVs with gene expression data  Seminar

2008-05:
17 김도균 The pharmacogenetics and pharmacogenomics knowledge base: accentuating the knowledge     J.Club
19 김도균 SNP database test  Seminar

2008-04:
14 김도균 SNP array 5.0 analysis  Seminar
19 김도균 SNPLims: a data management system for genome wide association studies     J.Club
28 김도균 SNP database Test  Seminar

2008-03:
10 김도균 ADRSNP system(약물이상반응 유전체연구) [약물유전체] Seminar
15 김도균 Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene     J.Club
28 김도균 What we do for TCGA  Seminar

2008-02:
02 김도균 CancerGenes: a gene selection resource for cancer genome projects     J.Club
22 김도균 시료은행 데이터베이스 (약물유전체) [약물유전체] Seminar

2008-01:
08 김도균 A framework for integration of probe-level data from heterogeneous microarray platforms (SNP chip)  Seminar
25 김도균 Progress in Pharmacogenomics project [약물유전체] Seminar

2007-12:
14 김도균 A framework for integration of probe-level data from heterogeneous microarray platforms (copy number data)  Seminar
15 김도균 AILUN: reannotating gene expression data automatically     J.Club
28 김도균 Integration of heterogeneous probe-level data  Seminar

2007-11:
03 김도균 An integrated system for heterogeneous data management and analysis  J.Club
09 김도균 Progress in Xperanto-SNP  Seminar
17 김도균 DNA, diseases and databases:disastrously deficient     J.Club
27 김도균 An integrated system for heterogeneous data management and analysis  Seminar

2007-10:
09 김도균 Replicate of CTP (Chromosomal Transcriptional Patterns)  Seminar
23 김도균 Progress in Xperanto-SNP  Seminar

2007-09:
08 김도균 Challenges and standards in integrating surveys of structural variation [CNV, review]      J.Club
11 김도균 CRLMM (Corrected Robust Linear Model with Maximum Likelihood Distance) [snp, genotyping] Seminar
29 김도균 Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer       J.Club

2007-08:
08 김도균 Xperanto-SNP (A web-based integrated system for SNP data management and analysis) [SNP, database, Xperanto-SNP] Seminar
29 김도균 Copy number variation from Korean SNP data [Korean, CNV, SNP data] Seminar

2007-07:
06 김도균 Work plan: Integrated SNP database and Analysis system [SNP, CNV, system] Seminar
20 김도균 Copy number and loss of heterozygosity estimation [CNV, SNP, LOH] Seminar
28 김도균 Genome-wide copy number profiling on high-density bacterial artificial chromosomes, single-nucleotide     J.Club

2007-06:
20 김도균 Effects of copy number variations on classical genetic studies [SNP, CNV] Seminar

2007-05:
09 김도균 R API for NetCDF [netCDF] Seminar
26 김도균 Completing the map of human genetic variation [CNV, structural variation]      J.Club
30 김도균 Analysis plan for GAW data [CNV, Genome-wide association, SNP] Seminar

2007-04:
18 김도균 HDF and NetCDF [HDF, NetCDF] Seminar

2007-03:
09 김도균 Detect CNVs using GEMCA [CNV, GEMCA] Seminar
24 김도균 Relative impact of nucleotide and copy number variation on gene expression phenotypes [CNV SNP expression]      J.Club
28 김도균 Progress in detecting CNVs from Korean population data [SNP, Korean] Seminar

2007-02:
10 김도균 Copy number variation: New insights in genome diversity [CNV, copy number variants]      J.Club
21 김도균 Tool for organizing and visualizing SNP-level summaries of copy number and genotype calls [SNP, CNV] Seminar
26 김도균 Alogorithms for detecting copy number variation using SNP genotyping arrays [CNV, Algorithm] Seminar

2007-01:
19 김도균 Partitioning test of SNP database [partition, SNP DB] Seminar

2006-12:
08 김도균 System outline from Affy 500K SNP chip data [SNP, 500K] Seminar
29 김도균 Annotation system for Korean population data [SNP, 500k, system] Seminar
30 김도균 Global variation in copy number in the human genome [CNV] J.Club

2006-11:
01 김도균 PBM (Protein Binding Microarray) review  Seminar
11 김도균 Design of a combinatorial DNA microarray for protein-DNA [PBM]    J.Club
17 김도균 Progress in SNP analysis and databasing [SNP, 500k] Seminar

2006-09:
23 김도균 MGED9 review [MGED] J.Club
27 김도균 Chromosome instability in cancer [scan] Seminar

2006-07:
10 김도균 progress in KMA Drug DB [KMA] Seminar
11 김도균 Identification of DKKs target genes [dkk, 권영근교수님] BioEMR

2006-06:
27 김도균 Predicting chromosome instability in cancer using gene expression data and location information [scan, chromosome instability] BioEMR

2006-05:
16 김도균 progress in KMA Drug DB [KMA Drug DB] BioEMR

2006-04:
17 김도균 Drug Information Service  Seminar
18 김도균 KMA Drug DB - KMA web interface  BioEMR

2006-03:
02 김도균 Implementation ChromiViz for integration with bioCANDi 　  BioEMR
28 김도균 KMA drug DB  BioEMR

2006-01:
23 김도균 ChromoViz implementation for BioCANDi  Seminar

2005-08:
22 김도균 ChromoViz Implementation as a web-based software  Seminar

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