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2023-08:
26 임성수 Identification of core genes and pathways in melanoma metastasis via bioinformatics analysis     J.Club

2022-06:
11 부은경 Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study     J.Club

2022-05:
28 조민아 A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis     J.Club

2021-08:
07 ӿ Pathogenic missense protein variants affect different functional pathways and proteomic features than healthy population variants     J.Club

2021-05:
03 최선 cancer subtype classification and modeling by pathway attention and propagation  MAInfo

2020-07:
11 De novo variants in exomes of congenital heart disease patients identify risk genes and pathways     J.Club

2019-12:
02 ֿ Pathway-based analysis for cSAGs of Parkinsons disease  BioEMR
21 유경훈 Towards precision medicine: interrogating the human genome to identify drug pathways associated with potentially functional, population-differentiated polymorphisms     J.Club
23 ֿ Examination of Parkinsons disease cSAG deleteriousness using GVB score and pathway analysis  SysBiol

2019-11:
25 유경훈 Towards precision medicine: interrogating the human genome to identify drug pathways associated with potentially functional, population-differentiated polymorphisms  SysBiol

2019-06:
13 유승원 discussion : application of drug score, pathway score to 6MP analysis  MAInfo
15 Conditional and interaction gene-set analysis reveals novel functional pathways for blood pressure     J.Club

2019-03:
30 Pathway Based Analysis of Mutation Data Is Efficient for Scoring Target Cancer Drugs     J.Club

2019-01:
26 Efficiient Parameter Estimation Enables the Prediction of Drug Response Using a Mechanistic Pan-Cancer Pathway Model     J.Club

2018-12:
15 Pathway-Based Drug Repositioning for Cancers: Computational Prediction and Experimental Validation     J.Club

2018-11:
24 Pathway-structured predictive modeling for multi-level drug response in multiple myeloma     J.Club

2018-08:
11 유승원 In silico Pathway Activation Network Decomposition Analysis (iPANDA) as a method for biomarker development     J.Club

2018-05:
28 유승원 introduction : A pathway-centric approach to rare variant association analysis  MAInfo

2018-01:
11 ֿ Pathway annotation of genes synthetically associated to GWAS PGx variants  SysBiol
31 ֿ Pathway enrichment analysis for FDA and GWAS PGx variants  SysBiol

2017-09:
27 Analysis with pathway score in 999 Depressive patients  TopicSem

2017-07:
24  Pathway score for survival analysis in HNSC   TopicSem

2017-06:
19 Survival analysis in HNSC with metabolism pathway - Interpretation of the result  TopicSem

2017-05:
13 Pathway-Structured Predictive Model for Cancer Survival Prediction: A Two-Stage Approach     J.Club
17 Survival analysis with pathway score in metabolism pathways  TopicSem

2017-04:
10 Pathway score based on the gene damaging score  TopicSem
22 SPATIAL: A System-level PAThway Impact AnaLysis approach     J.Club

2017-03:
06 Pathway score based on the gene damaging score  TopicSem

2017-02:
25 Pathway-based gene signatures predicting clinical outcome of lung adenocarcinoma     J.Club

2017-01:
02 The Use of Gene Ontology Term and KEGG Pathway Enrichment for Analysis of Drug Half Life  SysBiol
02 The Use of Gene Ontology Term and KEGG Pathway Enrichment for Analysis of Drug Half Life  SysBiol
11 Pathway damaging score based on the gene score in the Head and Neck squamous cell carcinomas   TopicSem
11 [Review]Pathway based gene signature predicting clinical outcome in cancer  MAInfo
11 [Review]Pathway based gene signature predicting clinical outcome in cancer  MAInfo

2016-12:
07 Pathway damaging score based on the gene score in the Head and Neck squamous cell carcinomas   TopicSem
30 Pathway damaging score based on the gene score in the Head and Neck squamous cell carcinomas   Seminar
30 ȫֿ Modeling and Usage of PharmacoGene Pathway Database(PG-path)  Seminar

2016-11:
07 ȫֿ Human BioPathway Databases  SysBiol
12 A pathway-centric approach to rare variant association analysis     J.Club

2016-10:
19 ȫֿ Standard Format of Bio-Pathway Information  BioEMR
31 ֿ Human BioPathway Databases  SysBiol

2016-08:
10 [review]Personalized pathway enrichment map   MAInfo
27 Identifying overlapping mutated driver pathways by constructing gene networks in cancer.     J.Club
29 Drug-induced pathways based on CMAP   xMutant

2016-07:
02 An integrative somatic mutation analysis to identify pathways linked with survival outcomes across 19 cancer types     J.Club
04 Drug-induced pathways based on CMAP  xMutant

2016-06:
27 The complementary interpretations between two pathway groups   TopicSem

2016-05:
11 Busulfan induced hepatotoxicity associated genes in Busulfan pathway  TopicSem

2016-04:
30 A network-based analysis of colon cancer splicing changes reveals a tumorigenesis-favoring regulatory pathway emanating from ELK1     J.Club

2015-12:
05 RNA-Seq of Tumor-Educated Platelets Enables Blood-Based Pan-Cancer, Multiclass, and Molecular Pathway Cancer Diagnostics     J.Club
23 Ritodrine meta-pathway and sub-pathway scores.  TopicSem

2015-10:
07 The complementary interpretations between two pathway groups  TopicSem

2015-06:
13 Somatic mutations in arachidonic acid metabolism pathway genes enhance oral cancer post-treatment disease-free survival      J.Club
17 Functional pathway based approach for identifying the cancer prognostic signature  TopicSem

2015-04:
08 The results of pathway analysis using protein domain   TopicSem
24 Pathway enrichment analysis using the Reactome Functional interaction module of Cytoscape  xMutant

2015-01:
24 ӿ Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complex      J.Club

2014-11:
12 Relationship of Major Wnt pathway genes and 15 nmLoF genes in the SQCCs  TopicSem

2014-10:
16 KEGG Pathway data download using rest API  xMutant

2014-09:
26 Dys-regulation of the Wnt pathway in the SQCCs   xMutant
29 Dys-regulation of the Wnt pathway in the squamous cell carcinoma  TopicSem

2014-07:
26 ISMB review : Simultaneously identification of multiple driver pathways in cancer  J.Club
30 Dysregulation of Wnt pathway in the HNSC and LUSC   TopicSem

2014-06:
18 Survival analysis and Validation of the Mutated Wnt pathway genes in the SQCCs  TopicSem
19 Survival analysis and Validation of the Mutated Wnt pathway genes in the SQCCs  xMutant
28 ̰ȭ Prioritizing Diesase-Linked Variants, Genes, and Pathways with an Integrative Whole-Genome Analysis Pipeline     J.Club

2014-01:
25 A Structure-Based Approach for Mapping Adverse Drug Reactions to the Perturbation of Underlying Biological Pathways     J.Club

2013-11:
16 ̼S Pathway analysis of genome-wide data improves warfarin dose prediction     J.Club

2013-09:
07 DrGaP: A Powerful Tool for Identifying Driver Genes and Pathways in Cancer Sequencing Studies     J.Club

2013-07:
11 ̿ Algorithms for finding mutated driver pathways   MAInfo

2013-06:
08 Mutations in NMNAT1 cause Leber congenital amaurosis and identify a new disease pathway for retinal degeneration     J.Club

2013-05:
11 Comprehensive genomic characterization defines human glioblastoma genes and core pathways     J.Club

2013-04:
20 Personalized Pathway Enrichment Map of Putative Cancer Genes from Next Generation Sequencing Data     J.Club

2013-03:
25 MedCassandra - validation result of drug rank using PPI and pathway information  TopicSem

2013-01:
15 network based pathway analysis for COPD data  MAInfo
15 network based pathway analysis for COPD data  MAInfo

2012-12:
08 Integration of External signaling Pathways with the Core Transctriptional Network in Embryonic Stem Cells  J.Club

2012-11:
03 PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis     J.Club

2012-08:
18 Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics     J.Club

2012-07:
21 Personalized Pathway Enrichment Map of Putative Cancer Genes from Next Generation Sequencing Data     J.Club
31 Intern A comprehensive network and pathway analysis of candidate genes in major depressive disorder  Seminar

2012-06:
23 A Mathematical Methodology for Determining the Temporal Order of Pathway Alterations Arising during Gliomagenesis     J.Club

2012-05:
15 ȭ Functional modularity prediction of pathway-based analysis      xMutant
25 Loss of function geneset analysis of personal genome using pathway-disease similarity   Seminar

2012-04:
18 Loss of Function Gene-set Analysis Of Personal Genome Using Pathway-Disease Similarity.  TopicSem

2012-03:
28 ȭ Core pathways in ovarian carcinomas driven by somatic mutations     MAInfo

2012-01:
07 Integrative network analysis to identify aberrant pathway networks in ovarian cancer     J.Club

2011-11:
03 Pharmacokinetic/Pharmacodynamic pathway mapping strategy  xMutant
07 Discovery of relationships between diseases and pathways from detected variants in next-generation sequencing data  TopicSem
16 Gene-set wise approach using KEGG pathway.     SysBiol

2011-09:
19 Discovery and classification of pathways perturbed in disease state based on gene set approach using whole genome sequencing data  TopicSem
24 The implications of relationships between human diseases and metabolic subpathways     J.Club

2011-08:
24 Pathway Analysis, Gene Ontology Analysis and Biological Text Mining   TopicSem

2011-07:
05 Integration of functional effect of sequence variations on models of pathways  MAInfo

2011-06:
13 Identification of disease-specific pathways applying gene set enrichment analysis to variants from next-generation sequencing data  TopicSem
28 From SNPs to pathway  MAInfo

2011-05:
11 The expanded research concept for comparison of Metabolic pathways and Non-metabolic pathways  TopicSem

2011-04:
02 PathLocdb: a comprehensive database for the subcellular localization of metabolic pathways and its application to multiple localization analysis     J.Club
25 Analysis to show the difference between metabolic and non-metabolic pathways  TopicSem

2011-03:
02 Pathway Analysis by properties of networks   TopicSem
12 ۿ Cancer Therapy Design Based on Pathway Logic     J.Club
12 A sub-pathway-based approach for identifying drug response principal network     J.Club
23 Data analysis and relation of PPI and DDI among KEGG pathways  TopicSem

2011-01:
17 Domain-Domain interactions in KEGG pathways  TopicSem

2010-12:
11 Mutated genes, pathways and processes in tumours     J.Club
15 Interpretation of high-throughput genomic data using integrated biological pathway resources and biomedical knowledge  TopicSem

2010-11:
03 MetaPath: a pathway extension from gene lists using literature  TopicSem
13 FMM: a web server for metabolic pathway reconstruction and comparative analysis.     J.Club
24 Pathway analysis of member genes for functional annotation  TopicSem

2010-10:
30 An integrative mutidimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer     J.Club

2010-09:
25 Extending pathways based on gene lists using InterPro domain signatures     J.Club

2010-08:
16 purpose of each search method in pathway tools  Seminar
19 Study Pathways based on protein structural information.  TopicSem
28 PathText: a text mining integrator for biological pathway visualizations     J.Club

2010-07:
19 Analysis of pathway tools with search method  Seminar
24 Pandora, a PAthway and Network DiscOveRy Approach based on common biological evidence     J.Club
29 MetaPath: an integrated pathway database enable to search biomedical context  TopicSem
31 Uniformly curated signaling pathways reveal tissue-specific cross-talks and support drug target discovery     J.Club

2010-06:
07 Parsing pathway data: syntactic integration  Seminar
12 Fault Tolerance in Protein Interaction Networks: Stable Bipartite Subgraphs and Redundant Pathways     J.Club

2010-05:
29 A Pathway-Based View of Human Diseases and Disease Relationships     J.Club

2010-04:
01 Pathway Structure comparison(KGML, BioPAX, Reactome, PID)  SysBiol
05 Comparison of Pathway Structure and Review of INOH and NCI PID  Seminar
07 Pathway Structure Comprasion(Addition of SBML, BioCarta and WikiPathway)  Seminar
08 PathwayStuio Review  SysBiol
08 Pathway Structure comparison(KGML, BioPAX, Reactome, PID, SBML)  SysBiol
15 Requriement Analysis of Pathway Systems_revision  SysBiol
17 NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways     J.Club
17 HPD: an online integrated human pathway database enabling systems biology studies     J.Club
17 Requriement Analysis of Pathway Systems_revision II  SysBiol
19 Define AXP pathways and integrated methods  Seminar
19 HPD: an online integrated human pathway database enabling systems biology studies  SysBiol
22 How to consist of entries extracted from pathway DBs.  SysBiol
29 OMIM gene pathway interaction  SysBiol

2010-03:
06 PID: the Pathway Interaction Database     J.Club
11 Pathway Models Review  SysBiol
12 Pathway Models Review  SysBiol
15 Pathway classification and pathway model  Seminar
18 Pathway Structure Comparison  SysBiol
21 Pathway Structure comparison(KGML, BioPAX, Reactome)  SysBiol
22 Pathway databases Research  Seminar
25 Pathway Structure comparison(KGML, BioPAX, Reactome)  SysBiol
25 INTERACTION PATHWAY DATABASE  SysBiol
25 Visualizing biological pathways  SysBiol
29 Pathway Structure Comparison  Seminar

2010-01:
04 trends in biolpgical pathway-based in analysis  Seminar
30 PathCase: pathways database system  J.Club

2009-12:
21 Comparison between biological pathway database  Seminar
28 Biological pathway-based analysis  Seminar
30 MetaPath: a meta-database for public biological pathway database  Seminar
30 Trends in Biological Pathway-based Analysis  Seminar

2009-11:
30 Netwrok biology and pathway team  Seminar

2009-10:
24 KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database     J.Club

2009-07:
02 MetaPath: a meta-model for integaration of standard biological pathway format  Seminar

2009-06:
01 MetaPath: an implementation of meta-database for biological pathway  Seminar

2009-05:
20 ̼S Microarrays - Analysis of Signaling Pathways  BookReading
20 Microarrays - Analysis of Signaling Pathways  BookReading

2009-04:
09 CelMAP: progress - pathway case study(3)  Seminar
27 Case study: modify original pathway using protein subcellular prediction algorithm  Seminar

2009-03:
28 PathExpress: a web-based tool to identify relevant pathways in gene expression data       J.Club

2009-01:
22 CelMAP: progress - map on pathway  Seminar

2008-11:
08 A global pathway crosstalk network     J.Club
24 CellMAP: an integrated pathways map using cellular location  Seminar
24 Pathway-based classification analysis of breast cancer microarray data  Seminar
29 An ontology-driven semantic mashup of gene and biological pathway     J.Club

2008-10:
04 Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways     J.Club

2008-09:
18 Comparison of informative pathways  Seminar
27 Reconstructing networks of pathways via significance analysis of their intersections.       J.Club

2008-05:
03 ̼ Computational analysis of biological functions and pathways     J.Club
09 Optimization of SVM in pathway-based classification  Seminar

2008-04:
05 SPIKE - a databse, visulization and analysis tool of cellular signaling pathways     J.Club
07 Update Pathway DB and review protein subcellular localization  Seminar
21 CelMap: an integrated knowledge map using biological pathways and subcellular location  Seminar

2008-02:
02 PathExpress: a web-based tool to identify relevant pathways in gene expression data     J.Club
15 pathway database update  Seminar
16 KEGGanim: pathway animations for high-throughput data     J.Club
29 Pathway update  Seminar

2008-01:
18 update pathway database  Seminar

2007-12:
28 Pathway classification analysis using BoostKDBC  Seminar
28 CeLMAP: integrated pathways map using cellular location information  Seminar

2007-10:
13 α A systems biology approach for pathway level analysis     J.Club

2007-09:
07 BoostKBC with pathway infomation III  Seminar

2007-08:
03 BoostKBC with pathway infomation  Seminar
22 BoostKBC with pathway infomation II  Seminar

2007-04:
13 Pathway based classification  Seminar

2007-01:
17 semantic similarity between concepts in lattice with human pathways  Seminar

2006-12:
02 Group testing for pathway analysis improves comparability of different microarray datasets     J.Club
06 semantic similarity between concepts in lattice with pathways  Seminar
27 semantic similarity between concepts in lattice with pathways II  Seminar
29 integration of pathway and GO  Seminar

2006-10:
20 Pathway map  Seminar

2006-09:
25 Inferring Causal Association among Pathways (ICAP) by Genetical Genomics approach  Seminar
30 Assessing semantic similarity measures for the characterization of human regulatory pathways [Semantic distance]      J.Club

2006-07:
08 A Systems Approach to Mapping DNA Damage Response Pathways [DNA damage response pathway]      J.Club

2006-06:
05 Review pathway systems  Seminar
24 ¼ Reconstructing the pathways of a cellular system from genome-scale signals by using matrix and tensor computations [pathwayEVD]      J.Club

2006-05:
04 ¼ [PathTalk] Geodesic distance in pathway graph [PathTalk] SysBiol
12 Mantel test with pathway gene set II  MAInfo
13 Oncogenic pathway signatures in human cancers as a guide to targeted therapies       J.Club
18 CellMap for pathway [pathway mapintegration of GO and pathway] SysBiol
20 ¼ Pathway recognition and augmentation by computational analysis of microarray expression data [PathPlus]      J.Club

2006-04:
06 Pathway mapping  SysBiol
10 Cell graph for pathways & (н ԷȲ)  Seminar
26 Mantel test with pathway gene set  xMutant

2006-03:
03 ¼ Visualization and evaluation of structural relationship between gene clusters and biological pathways [PathTalk] SysBiol
25 WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data       J.Club
30 ¼ Geodesic distance in pathway graph  SysBiol

2006-02:
03 ¼ PathTalk: Visualization and evaluation of structural relationship between gene clusters and biological pathways [PathTalk] SysBiol

2006-01:
10 PathMeSH: gene-centric pathway view  xMutant
13 ¼ PathTalk: diameters of gene sets on topological structure of pathways [PathTalk] SysBiol

2005-12:
13 Association between disease and pathway  xMutant
23 ¼ PathTalk: Visualization and evaluation of structural relationship between gene clusters and biological pathways [PathTalk] SysBiol
23 ArrayXPathIII: localize KEGG pathways using KEGG API  SysBiol

2005-11:
09 Pathway-based microarray analysis; results with different data sets  MAInfo
28 ¼ PathTalk -- where to go with our pathway databases? [PathTalk] Seminar

2005-10:
08 Validation and refinement of gene-regulatory pathways on a network of physical interactions     J.Club
19 Microarray analysis with multple pathways  MAInfo

2005-09:
16 GRIP Pathway Mapping  SysBiol
30 Idea of pathway merge  SysBiol

2005-08:
20 ¼ Alignment of metabolic pathways       J.Club

2005-07:
04 Identification of Pathways related to the Clinical Outcome of the Microarray data using Global Test [AppGen] Seminar
13 Pathway based tumor classification  MAInfo
26 Identification of Pathways related to Pathologic Status in Lung cancer using Global Test  xMutant

2005-06:
03 ¼ Learning Model for pathway extension  SysBiol
28 Identification of Pathways related to the lymph node metastasis in lung cancer using Global test  xMutant

2005-05:
03 Identification of Pathway related to the Clinical Outcome within Microarray data using Global Test  xMutant
09 ¼ PathPlus - not a single pathway but also topology of pathways [SysBiol] Seminar
28 GeneWays: a system for extracting, analyzing, visualizing,and integrating molecular pathway data       J.Club
31 Identification of pathways related to the pathologic status of squamous cell carcinoma of uterine cervix using global test  xMutant

2004-12:
09 ѹ̷ VitaPad: Visualization Tools for the Analysis of Pathway Data  SysBiol

2004-11:
25 ѹ̷ Searching pathway databases  SysBiol

2004-10:
06 ¼ Microarray expression data reflect the pathway knowledge  MAInfo
11 PathMesh: database of pathway and drug related disease  Seminar
21 ѹ̷ Possibility of systematic Multiple-pathways  SysBiol
25 ¼ Prediction performance of pathway and its network characters [PathPlus] Seminar

2004-09:
01 ¼ [PathPlus] Performance index of prediction for pathway  MAInfo

2004-08:
24 PathPlus: extending a pathway using expression profiles based on the known knowledge about the pathway [DataAnalysis] Seminar

2004-07:
13 ¼ Prediction model for pathway extension using high throughput biological data [DataAnalysis] Seminar

2004-06:
26 TRMP: A Dataqbase of Therapeutically Relevant Multiple-Pathways       J.Club
29 Database of Association between disease and pathway [Grip] Seminar

2004-05:
12 ¼ Plan to extend human pathway  MAInfo
25 ¼ Evaluation methods for pathway prediction model [Xperanto] Seminar

2004-04:
17 ¼ Discovering molecular pathways from protein interaction and gene expression data [segal]      J.Club

2004-03:
10 ¼ Extraction and validation of pathway structure from Yeast genome society  MAInfo
17 Pathway Extension through genome society information  MAInfo
23 unknown Estimating hidden structure in biochemical pathways through microarray data set [DataAnalysis] Seminar

2003-12:
27 Deriving phylogenetic trees from the similarity analysis of metabolic pathways       J.Club

2003-11:
22 PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis       J.Club
29 α Genome-wide pathway analysis and visualization using gene expression data       J.Club

2003-10:
04 Pathways database system: an integrated system for biological pathways       J.Club
27 ȫ± Critical Pathway   BioEMR
28 unknown Critical Pathways [ClinInfo] Seminar

2003-08:
09 ¼ Subnetwork hierarchies of biochemical pathways       J.Club
23 α Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer       J.Club

2003-03:
18 An Overview of Data Models for the Analysis of Biochemical Pathways  Seminar

2002-09:
12 A motif-based profile scanning approach for genome-wide prediction of signaling pathways       J.Club

2002-05:
09 XML documentation of biopathways and their simulations in Genomic Object Net       J.Club

-:
Pathway-based analysis for cSAGs of Parkinsons disease  BioEMR

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