08 | 문성희 | Shared genetic architecture between irritable bowel syndrome and psychiatric disorders reveals molecular pathways of the gut-brain axis | ![]() |
J.Club |
25 | 권호식 | Germline determinants of aberrant signaling pathways in cancer | ![]() |
J.Club |
26 | 임성수 | Identification of core genes and pathways in melanoma metastasis via bioinformatics analysis | ![]() |
J.Club |
11 | 부은경 | Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study | ![]() |
J.Club |
28 | 조민아 | A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis | ![]() |
J.Club |
07 | ӿ | Pathogenic missense protein variants affect different functional pathways and proteomic features than healthy population variants | ![]() |
J.Club |
03 | 최선 | cancer subtype classification and modeling by pathway attention and propagation | MAInfo |
11 | De novo variants in exomes of congenital heart disease patients identify risk genes and pathways | ![]() |
J.Club |
25 | 유경훈 | Towards precision medicine: interrogating the human genome to identify drug pathways associated with potentially functional, population-differentiated polymorphisms | SysBiol |
13 | 유승원 | discussion : application of drug score, pathway score to 6MP analysis | MAInfo | |
15 | Conditional and interaction gene-set analysis reveals novel functional pathways for blood pressure | ![]() |
J.Club |
30 | Pathway Based Analysis of Mutation Data Is Efficient for Scoring Target Cancer Drugs | ![]() |
J.Club |
26 | Efficiient Parameter Estimation Enables the Prediction of Drug Response Using a Mechanistic Pan-Cancer Pathway Model | ![]() |
J.Club |
15 | Pathway-Based Drug Repositioning for Cancers: Computational Prediction and Experimental Validation | ![]() |
J.Club |
24 | Pathway-structured predictive modeling for multi-level drug response in multiple myeloma | ![]() |
J.Club |
11 | 유승원 | In silico Pathway Activation Network Decomposition Analysis (iPANDA) as a method for biomarker development | ![]() |
J.Club |
28 | 유승원 | introduction : A pathway-centric approach to rare variant association analysis | MAInfo |
11 | ֿ | Pathway annotation of genes synthetically associated to GWAS PGx variants | SysBiol | |
31 | ֿ | Pathway enrichment analysis for FDA and GWAS PGx variants | SysBiol |
27 | Analysis with pathway score in 999 Depressive patients | TopicSem |
24 | Pathway score for survival analysis in HNSC | TopicSem |
19 | Survival analysis in HNSC with metabolism pathway - Interpretation of the result | TopicSem |
13 | Pathway-Structured Predictive Model for Cancer Survival Prediction: A Two-Stage Approach | ![]() |
J.Club | |
17 | Survival analysis with pathway score in metabolism pathways | TopicSem |
10 | Pathway score based on the gene damaging score | TopicSem | ||
22 | SPATIAL: A System-level PAThway Impact AnaLysis approach | ![]() |
J.Club |
06 | Pathway score based on the gene damaging score | TopicSem |
25 | Pathway-based gene signatures predicting clinical outcome of lung adenocarcinoma | ![]() |
J.Club |
07 | ȫֿ | Human BioPathway Databases | SysBiol | |
12 | A pathway-centric approach to rare variant association analysis | ![]() |
J.Club |
19 | ȫֿ | Standard Format of Bio-Pathway Information | BioEMR | |
31 | ֿ | Human BioPathway Databases | SysBiol |
10 | [review]Personalized pathway enrichment map | MAInfo | ||
27 | Identifying overlapping mutated driver pathways by constructing gene networks in cancer. | ![]() |
J.Club | |
29 | Drug-induced pathways based on CMAP | xMutant |
02 | An integrative somatic mutation analysis to identify pathways linked with survival outcomes across 19 cancer types | ![]() |
J.Club | |
04 | Drug-induced pathways based on CMAP | xMutant |
27 | The complementary interpretations between two pathway groups | TopicSem |
11 | Busulfan induced hepatotoxicity associated genes in Busulfan pathway | TopicSem |
30 | A network-based analysis of colon cancer splicing changes reveals a tumorigenesis-favoring regulatory pathway emanating from ELK1 | ![]() |
J.Club |
05 | RNA-Seq of Tumor-Educated Platelets Enables Blood-Based Pan-Cancer, Multiclass, and Molecular Pathway Cancer Diagnostics | ![]() |
J.Club | |
23 | Ritodrine meta-pathway and sub-pathway scores. | TopicSem |
07 | The complementary interpretations between two pathway groups | TopicSem |
08 | The results of pathway analysis using protein domain | TopicSem | ||
24 | Pathway enrichment analysis using the Reactome Functional interaction module of Cytoscape | xMutant |
24 | ӿ | Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complex | ![]() |
J.Club |
12 | Relationship of Major Wnt pathway genes and 15 nmLoF genes in the SQCCs | TopicSem |
16 | KEGG Pathway data download using rest API | xMutant |
26 | Dys-regulation of the Wnt pathway in the SQCCs | xMutant | ||
29 | Dys-regulation of the Wnt pathway in the squamous cell carcinoma | TopicSem |
26 | ISMB review : Simultaneously identification of multiple driver pathways in cancer | J.Club | ||
30 | Dysregulation of Wnt pathway in the HNSC and LUSC | TopicSem |
25 | A Structure-Based Approach for Mapping Adverse Drug Reactions to the Perturbation of Underlying Biological Pathways | ![]() |
J.Club |
16 | ̼S | Pathway analysis of genome-wide data improves warfarin dose prediction | ![]() |
J.Club |
07 | DrGaP: A Powerful Tool for Identifying Driver Genes and Pathways in Cancer Sequencing Studies | ![]() |
J.Club |
11 | ̿ | Algorithms for finding mutated driver pathways | MAInfo |
08 | Mutations in NMNAT1 cause Leber congenital amaurosis and identify a new disease pathway for retinal degeneration | ![]() |
J.Club |
11 | Comprehensive genomic characterization defines human glioblastoma genes and core pathways | ![]() |
J.Club |
20 | Personalized Pathway Enrichment Map of Putative Cancer Genes from Next Generation Sequencing Data | ![]() |
J.Club |
25 | MedCassandra - validation result of drug rank using PPI and pathway information | TopicSem |
15 | network based pathway analysis for COPD data | MAInfo | ||
15 | network based pathway analysis for COPD data | MAInfo |
08 | Integration of External signaling Pathways with the Core Transctriptional Network in Embryonic Stem Cells | J.Club |
03 | 赵 | PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis | ![]() |
J.Club |
18 | Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics | ![]() |
J.Club |
23 | 赵 | A Mathematical Methodology for Determining the Temporal Order of Pathway Alterations Arising during Gliomagenesis | ![]() |
J.Club |
15 | ȭ | Functional modularity prediction of pathway-based analysis | ![]() |
xMutant |
25 | Loss of function geneset analysis of personal genome using pathway-disease similarity | Seminar |
18 | Loss of Function Gene-set Analysis Of Personal Genome Using Pathway-Disease Similarity. | TopicSem |
28 | ȭ | Core pathways in ovarian carcinomas driven by somatic mutations | ![]() |
MAInfo |
07 | 赵 | Integrative network analysis to identify aberrant pathway networks in ovarian cancer | ![]() |
J.Club |
24 | Pathway Analysis, Gene Ontology Analysis and Biological Text Mining | TopicSem |
05 | Integration of functional effect of sequence variations on models of pathways | MAInfo |
13 | Identification of disease-specific pathways applying gene set enrichment analysis to variants from next-generation sequencing data | TopicSem | ||
28 | From SNPs to pathway | MAInfo |
11 | The expanded research concept for comparison of Metabolic pathways and Non-metabolic pathways | TopicSem |
17 | Domain-Domain interactions in KEGG pathways | TopicSem |
11 | Mutated genes, pathways and processes in tumours | ![]() |
J.Club | |
15 | Interpretation of high-throughput genomic data using integrated biological pathway resources and biomedical knowledge | TopicSem |
30 | 赵 | An integrative mutidimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer | ![]() |
J.Club |
25 | Extending pathways based on gene lists using InterPro domain signatures | ![]() |
J.Club |
07 | Parsing pathway data: syntactic integration | Seminar | ||
12 | Fault Tolerance in Protein Interaction Networks: Stable Bipartite Subgraphs and Redundant Pathways | ![]() |
J.Club |
29 | A Pathway-Based View of Human Diseases and Disease Relationships | ![]() |
J.Club |
04 | trends in biolpgical pathway-based in analysis | Seminar | ||
30 | PathCase: pathways database system | J.Club |
30 | Netwrok biology and pathway team | Seminar |
24 | KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database | ![]() |
J.Club |
02 | MetaPath: a meta-model for integaration of standard biological pathway format | Seminar |
01 | MetaPath: an implementation of meta-database for biological pathway | Seminar |
20 | ̼S | Microarrays - Analysis of Signaling Pathways | BookReading | |
20 | Microarrays - Analysis of Signaling Pathways | BookReading |
09 | CelMAP: progress - pathway case study(3) | Seminar | ||
27 | Case study: modify original pathway using protein subcellular prediction algorithm | Seminar |
28 | PathExpress: a web-based tool to identify relevant pathways in gene expression data | ![]() ![]() |
J.Club |
22 | CelMAP: progress - map on pathway | Seminar |
04 | 赵 | Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways | ![]() |
J.Club |
18 | Comparison of informative pathways | Seminar | ||
27 | Reconstructing networks of pathways via significance analysis of their intersections. | ![]() ![]() |
J.Club |
03 | ̼ | Computational analysis of biological functions and pathways | ![]() |
J.Club |
09 | Optimization of SVM in pathway-based classification | Seminar |
18 | update pathway database | Seminar |
28 | Pathway classification analysis using BoostKDBC | Seminar | ||
28 | CeLMAP: integrated pathways map using cellular location information | Seminar |
13 | α | A systems biology approach for pathway level analysis | ![]() |
J.Club |
07 | BoostKBC with pathway infomation III | Seminar |
03 | BoostKBC with pathway infomation | Seminar | ||
22 | BoostKBC with pathway infomation II | Seminar |
13 | Pathway based classification | Seminar |
17 | semantic similarity between concepts in lattice with human pathways | Seminar |
20 | Pathway map | Seminar |
08 | A Systems Approach to Mapping DNA Damage Response Pathways [DNA damage response pathway] | ![]() ![]() |
J.Club |
05 | Review pathway systems | Seminar | ||
24 | ¼ | Reconstructing the pathways of a cellular system from genome-scale signals by using matrix and tensor computations [pathway, EVD] | ![]() ![]() |
J.Club |
06 | Pathway mapping | SysBiol | ||
10 | Cell graph for pathways & (н ԷȲ) | Seminar | ||
26 | Mantel test with pathway gene set | xMutant |
03 | ¼ | PathTalk: Visualization and evaluation of structural relationship between gene clusters and biological pathways [PathTalk] | SysBiol |
10 | PathMeSH: gene-centric pathway view | xMutant | ||
13 | ¼ | PathTalk: diameters of gene sets on topological structure of pathways [PathTalk] | SysBiol |
09 | Pathway-based microarray analysis; results with different data sets | MAInfo | ||
28 | ¼ | PathTalk -- where to go with our pathway databases? [PathTalk] | Seminar |
08 | Validation and refinement of gene-regulatory pathways on a network of physical interactions | ![]() |
J.Club | |
19 | Microarray analysis with multple pathways | MAInfo |
16 | GRIP Pathway Mapping | SysBiol | ||
30 | Idea of pathway merge | SysBiol |
20 | ¼ | Alignment of metabolic pathways | ![]() ![]() |
J.Club |
04 | Identification of Pathways related to the Clinical Outcome of the Microarray data using Global Test [AppGen] | Seminar | ||
13 | Pathway based tumor classification | MAInfo | ||
26 | Identification of Pathways related to Pathologic Status in Lung cancer using Global Test | xMutant |
03 | ¼ | Learning Model for pathway extension | SysBiol | |
28 | Identification of Pathways related to the lymph node metastasis in lung cancer using Global test | xMutant |
09 | ѹ̷ | VitaPad: Visualization Tools for the Analysis of Pathway Data | SysBiol |
25 | ѹ̷ | Searching pathway databases | SysBiol |
01 | ¼ | [PathPlus] Performance index of prediction for pathway | MAInfo |
24 | PathPlus: extending a pathway using expression profiles based on the known knowledge about the pathway [DataAnalysis] | Seminar |
13 | ¼ | Prediction model for pathway extension using high throughput biological data [DataAnalysis] | Seminar |
26 | TRMP: A Dataqbase of Therapeutically Relevant Multiple-Pathways | ![]() ![]() |
J.Club | |
29 | Database of Association between disease and pathway [Grip] | Seminar |
12 | ¼ | Plan to extend human pathway | MAInfo | |
25 | ¼ | Evaluation methods for pathway prediction model [Xperanto] | Seminar |
17 | ¼ | Discovering molecular pathways from protein interaction and gene expression data [segal] | ![]() ![]() |
J.Club |
27 | Deriving phylogenetic trees from the similarity analysis of metabolic pathways | ![]() ![]() |
J.Club |
04 | Pathways database system: an integrated system for biological pathways | ![]() ![]() |
J.Club | |
27 | ȫ± | Critical Pathway | BioEMR | |
28 | unknown | Critical Pathways [ClinInfo] | Seminar |
09 | ¼ | Subnetwork hierarchies of biochemical pathways | ![]() ![]() |
J.Club |
23 | α | Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer | ![]() ![]() |
J.Club |
18 | An Overview of Data Models for the Analysis of Biochemical Pathways | Seminar |
12 | A motif-based profile scanning approach for genome-wide prediction of signaling pathways | ![]() ![]() |
J.Club |
09 | XML documentation of biopathways and their simulations in Genomic Object Net | ![]() ![]() |
J.Club |
Pathway-based analysis for cSAGs of Parkinsons disease | BioEMR |