SNUBI Research ::   (93 talks satisfying Presenter = Rocky)
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2012-05:
22 Rocky A systems-based approach to explore interrelationships between drug targets and microRNAs target genes in human cancers using NCI-60 cancer cell lines  xMutant
25 Rocky The global impact of genomic variations on miRNAs and their regulatory genes using whole genome sequencing data in human cancer  Seminar

2012-04:
10 Rocky microRNA-Drug relationship using NCI cancer cell lines panel  MAInfo

2012-02:
08 Rocky NCI-60 Cell lines experimental condition and genes expression profiles and drugs sensitivity analysis  xMutant

2012-01:
17 Rocky Classification of renal cell carcinoma subtypes based on gene expression data and mapping genomic variation to NGS data  MAInfo

2011-12:
01 Rocky Comprehensive Analysis of Genetic Regulatory Network Regulators and Drugs using Gene Expression Profiles incorporating Genomic Variations  xMutant
13 Rocky Mapping of genomic variation in miRNA and its binding sites using whole genome sequencing data  MAInfo

2011-11:
01 Rocky Global mapping of genomic variations on microRNAs, target genes, TFBS, RNA binding proteins with variant knowledgebase  MAInfo
17 Rocky Global map of genomic variations on microRNAs, target genes, TFBS, RNA binding proteins using variant knowledgebase to construct a multi-dimensional genetic regulatory network   xMutant

2011-10:
04 Rocky Detection of genomic variations for microRNA and its target sites  MAInfo
06 Rocky Global impact on genomic variations in microRNAs, target genes and drug relationship  xMutant

2011-09:
15 Rocky [Replication- Work Progress] - Comprehensive analysis of the impact of SNPs and CNVs on human microRNAs and their regulatory genes  xMutant
27 Rocky Analysis of genomic variation in miRNA and its binding sites using whole genome sequencing data  MAInfo

2011-08:
02 Rocky Database schema for miRNA variant annotation  MAInfo

2011-07:
02 Rocky [Replication] - Comprehensive analysis of the impact of SNPs and CNVs on human microRNAs and their regulatory genes  xMutant
26 Rocky Analysis of genomic variation in miRNA and its binding sites using whole genome sequencing data  MAInfo

2011-06:
21 Rocky Framework for genomic variation discovery in miRNA and its binding sites from NGS data  MAInfo

2011-04:
26 Rocky microRNA variants detection from RNA transcriptomic deep sequencing data  MAInfo

2011-03:
10 Rocky GEOquery     xMutant
16 Rocky GEOquery test  xMutant
31 Rocky GEOquery test  xMutant

2011-01:
10 Rocky Computational prediction of target SNPs affecting miR-mRNA interaction   TopicSem

2010-12:
10 Rocky BioPortal: A Web Repository for Biomedical Ontologies and Data     xMutant
15 Rocky Gene Expression Omnibus (GEO)  xMutant
18 Rocky Single-nucleotide polymorphisms inside microRNA target sites influence tumor susceptibility     J.Club
20 Rocky Computational prediction of target SNPs affecting miR-mRNA interaction   TopicSem

2010-11:
05 Rocky MAGE-TAB VS MINiML  xMutant
06 Rocky MicroSNiPer : A Web Tool for Prediction of SNP Effects on Putative microRNA Targets     J.Club
10 Rocky A resource to prioritize the candidate SNPs in the study of disease association related to the SNPs on miR-mRNA interaction  TopicSem
19 Rocky Attributes list comparison for MAGE-TAB / MINiML  xMutant
29 Rocky Attributes list comparison for MAGE-TAB / MINiML  Seminar
30 Rocky A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing     MAInfo

2010-10:
05 Rocky table format     xMutant
05 Rocky Computational classification of microRNAs in next-generation sequencing data sequencing data     MAInfo
15 Rocky Parsing headers for adf.txt and unique attributes from sdrf and adf.txt files  xMutant
21 Rocky Parsing code for sdrf.txt attributes and extracting unique terms     xMutant
27 Rocky Extracting ArrayExpress sdrf/adf/idf unique terms  xMutant

2010-09:
11 Rocky A Catalog of Polymorphisms Falling in MicroRNA-Binding Regions of Cancer Genes     J.Club
13 Rocky Plan for SOFT to MAGE-TAB conversion  Seminar
15 Rocky Investigating SNPs residing in the MicroRNA-Binding Sites: Method of study  TopicSem
17 Rocky eVOC mapping idea     xMutant
28 Rocky Detecting single nucleotide variants from next generation sequencing data  MAInfo

2010-08:
05 Rocky Investigating SNPs residing in the MicroRNA-Binding Sites � progress  TopicSem

2010-07:
06 Rocky Detecting single nucleotide variants from next generation sequencing data  MAInfo
09 Rocky The MGED Ontology - Its Structure and Standards  xMutant
12 Rocky Detecting single nucleotide variants from next generation sequencing data  Seminar
20 Rocky SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors  MAInfo
31 Rocky Human polymorphism at microRNAs and microRNA target sites     J.Club

2010-06:
01 Rocky Work Progress  MAInfo
08 Rocky MicroRNA Discovery and Profiling in Human Embryonic Stem Cells by Deep Sequencing of Small RNA Libraries  MAInfo
17 Rocky Xperanto Table  xMutant
19 Rocky Genome-Wide Analysis of Small RNA and Novel MicroRNA Discovery in Human Acute Lymphoblastic Leukemia Based on Extensive Sequencing Approach     J.Club
22 Rocky Gene expression profiling by massively parallel sequencing  MAInfo
24 Rocky Investigating SNPs residing in the MicroRNA-Binding Sites from GWAS on Cancer Related Genes  Seminar
25 Rocky DNA Microarray  xMutant

2010-05:
07 Rocky GPL,GDS,GSE attributes lists  xMutant
08 Rocky Discovery of Novel MicroRNAs in Female Reproductive Tract Using Next Generation Sequencing     J.Club
19 Rocky Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma     MAInfo
25 Rocky Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma  MAInfo

2010-04:
02 Rocky   xMutant
09 Rocky eVOC table  xMutant
12 Rocky eVOC data parsing and its architecture  Seminar
14 Rocky De Novo Genome Assembly using Paired-End Short Reads  MAInfo
16 Rocky GO Term and its data structure  xMutant
19 Rocky Plan of work and Gene Ontology structure  Seminar
23 Rocky   xMutant
27 Rocky Sequence assembly using paired-end short tags   MAInfo
30 Rocky GPL Structure  xMutant

2010-03:
19 Rocky OMIE: Ontology Mapping within an Interactive and Extensible Environment  xMutant
20 Rocky Ontology-driven indexing of public datasets for translational bioinformatics     J.Club

2010-02:
09 Rocky NCBI GEO standards and services for microarray data  xMutant
16 Rocky   xMutant
20 Rocky An Analysis of Human MicroRNA and Disease Associations     J.Club

2010-01:
16 Rocky In silico method for systematic analysis of feature importance in microRNA-mRNA interactions     J.Club

2009-12:
12 Rocky Computational Challenges in miRNA Target Predictions: To Be or Not to Be a True Target?     J.Club

2009-11:
07 Rocky ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization     J.Club
23 Rocky Normalization of Differential Expression in Gene Expression Microarrays  Seminar

2009-10:
10 Rocky mRNA expression profiles show differential regulatory effects of microRNAs between estrogen receptor-positive and estrogen receptor-negative breast cancer     J.Club
19 Rocky Investigating differential regulatory effects of microRNAs in breast cancer from mRNA/miRNA expression profiles  Seminar
28 Rocky Investigating differential regulatory effects of microRNAs in breast cancer from mRNA/miRNA expression profiles  Seminar

2009-09:
07 Rocky Investigating miR-based microregulation of the p53 master regulatory network  Seminar
23 Rocky Investigating miR-based microregulation of the p53 master regulatory network  Seminar

2009-08:
01 Rocky DIANA-microT web server: elucidating microRNA functions through target prediction     J.Club

2009-07:
11 Rocky Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application     J.Club
13 Rocky Building Gene Regulatory Network of TP53 and miRNAs in Colorectal Cancer  Seminar
30 Rocky The impact of microRNAs on colorectal cancer research  Seminar

2009-06:
08 Rocky Investigation of regulatory mechanism of miRNAs and p53 : Progress�  Seminar
25 Rocky Building Gene Regulatory Network of miRNAs and Genes in Colorectal Cancer  Seminar

2009-05:
21 Rocky Investigation of regulatory mechanism of miRNAs and p53 : Progress  Seminar
30 Rocky RNAdb뾞 comprehensive mammalian noncoding RNA database     J.Club

2009-04:
16 Rocky Investigation of regulatory mechanism of miRNA and P53 in colorectal cancer : a computational approach  Seminar
18 Rocky Argonaute database for gene regulation by mammalian miRNAs     J.Club

2009-03:
30 Rocky Investigation of regulatory mechanism of miRNA and P53 in colorectal cancer : a computational approach  Seminar

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