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2008-04:
04 α Integrating knowedge and data in Bioinformatics  Seminar

2008-03:
17 α RiPeter Draft Final  Seminar

2008-02:
12 α SPM benchmark  Seminar
23 α A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans     J.Club
26 α Second stalemate in RiPeter  Seminar

2008-01:
15 α SVG in Firefox  Seminar
19 α Novel Integration of Hospital Electronic Medical Records and Gene Expression Measurements to Identify Genetic Markers of Maturation     J.Club

2007-12:
18 α RiPeter GSE-wise variances [RiPeter] Seminar
28 α Imporving DEG identification in small sample datasets using GEO data  Seminar

2007-11:
03 α Sample selection in RiPeter  J.Club
13 α Reproducibility in sample selection [RiPeter] Seminar
24 α Functional Specificity among Ribosomal Proteins Regulates Gene Expression [RiPeter]    J.Club
30 α RiPeter Checkpoint: Reproducibility on multiple datasets [RiPeter] Seminar

2007-10:
02 α RiPeter Bootstrap results  Seminar
13 α A systems biology approach for pathway level analysis     J.Club
26 α RiPeter scenario sample selection  Seminar

2007-09:
08 α A full Bayesian hierarchical mixture model for the variance of gene differential expression     J.Club
18 α RiPeter in empirical and bayesian approach  Seminar

2007-08:
03 α RiPeter ߰  Seminar
31 α Progress in RiPeter  Seminar

2007-07:
09 α Wikirize SNUBI web page  Seminar
13 α Preliminary data on DEGBoost  Seminar
27 α Second data on DEGBoost  Seminar
28 α Integrative molecular concept modeling of prostate cancer progression     J.Club

2007-06:
08 α Gene expression entroyp ۾  Seminar
11 α Web 2.0  Seminar
18 α Web 2.0: Technical review of RSS and Ajax  Seminar
23 α Improving identification of differentially expressed genes in microarray studies using information from public databases     J.Club
27 α Crosschip review  Seminar

2007-05:
16 α The applicability Entropy to microarray data  Seminar
19 α A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription       J.Club

2007-04:
04 α EM Learning [EM] Seminar
25 α GEO User story: Gene Network Inference  Seminar

2007-03:
16 α Regularities in the expression data [PRM] Seminar
17 α Large-scale identification of novel transcripts in the human genome       J.Club

2007-02:
02 α Context lost in meta-dataset  Seminar
23 α Biclustering benchmark [biclusteringbenchmark] Seminar

2007-01:
10 α Idea review in 2007 [idea] Seminar
27 α Common genetic variants account for differences in gene expression among ethnic groups       J.Club

2006-12:
13 α Gene complexity: half split test  Seminar
16 α Large scale data mining approach for gene-specific standardization of microarray gene expression data     J.Club

2006-11:
03 α Different gene behavior complexity observed in GPL96  Seminar
04 α Predicting rules on organization of cis-regulatory elements, taking the order of elements into account       J.Club
29 α Gene complexity results with plots  Seminar

2006-10:
13 α Larger weight on rare samples  Seminar
30 α Xperanto  [biocandi] Seminar

2006-07:
06 α Another ANOVA viwer in BioCANDI [biocandi] SysBiol
15 α Identification of biochemical networks by S-tree based genetic programming       J.Club
19 α time series microarray м [[time-series]] xMutant

2006-06:
03 α Histone acetylation and transcriptional regulation in the genome of Saccharomyces cerevisiae [cca]      J.Club
12 α Using GEO [GEO] Seminar
14 α GEO source count [geo] xMutant
15 α A Primer on Kernel Methods [kernel] SysBiol

2006-05:
11 α Correlation dependent on third gene expression level  SysBiol
17 α Coexpression dynamics     xMutant
22 α Research plan  Seminar

2006-04:
13 α Temporal relation between GO  SysBiol
19 α Correlation changes in module genes across experimental conditions  xMutant
29 α Contributions of low molecule number and chromosomal positioning to stochastic gene expression     J.Club

2006-03:
08 α spm   xMutant
11 α Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer       J.Club
13 α ̿ĵ ׽Ʈ  Seminar
16 α Functional enrichment of sequential pattern with MIPS functional category  SysBiol
29 α Interpretation of inter-module relationship in SPM  xMutant

2006-02:
04 α Shifting and scaling patterns from gene expression data       J.Club
06 α Pararllelizing BioCANDi  Seminar

2006-01:
06 α Application of Genetic Algorithm to sequential pattern mining on gene expression data  SysBiol
20 α Sequential pattern mining Ȯ flow chart  SysBiol
23 α Sequential pattern mining   Seminar
24 α Order-preserving tendency of BP, MF, CC GO-slim term in SMD dataset  xMutant

2005-12:
05 α ̿ĵ ̿ ü ڷм  Seminar
06 α Cluster viewer demonstration  xMutant
16 α Rationale for sequential pattern mining  SysBiol
24 α Differential coexpression analysis using microarray data and its application to human cancer       J.Club
27 α Measuring order-preserving tendency of co-regulated genes with Kullback-Leibler divergence  xMutant

2005-11:
04 α spm ִ   SysBiol
07 α ̿ĵ ̿ ü ڷм  Seminar
08 α ü ڷм  xMutant
12 α Assessing the limits of genomic data integration for predicting protein networks       J.Club

2005-09:
10 α Local modeling of global interactome networks       J.Club
16 α Cluster viewer upgrade  SysBiol
26 α Cluster viewer demonstration  Seminar

2005-08:
02 α Multiple test corrections in SPM  xMutant
05 α Get the facts about SGD GO-slim  SysBiol
08 α CEBS review  Seminar
19 α The very first step in mouse lymphoma microarray analysis  SysBiol
30 α Mouse lymphoma microarray analysis 2  xMutant

2005-07:
01 α Temporal relation between GO terms  SysBiol
02 α A procedure for assessing GO annotation consistency       J.Club
12 α terminal GO ð ߷  xMutant
18 α Results on SPM  Seminar

2005-06:
04 α Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments.       J.Club
07 α K-means clustering for filtering large number of sequential patterns  xMutant

2005-05:
24 α How to conclude sequential pattern mining  xMutant

2005-04:
04 α Inferring gene-module relations by biclustering on large-scale expression data using sequential pattern mining [AppGen] Seminar
15 α Summary of sequential pattern mining  SysBiol
16 α Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae       J.Club

2005-03:
17 α FESD: a Functional Element SNPs Database in human  SysBiol
18 α Sequential pattern mining with gap limit & ɱԼ ̵   xMutant

2005-02:
03 α Current agenda and Overlap matrix visualization  SysBiol
18 α NA  xMutant
21 α Modular organization of cellular networks       J.Club

2005-01:
06 α Manuscripting sequential patterning mining in gene expression data  SysBiol
21 α NA  xMutant

2004-12:
10 α NA  xMutant
16 α Sequential pattern mining ⺻ ũе  SysBiol
18 α Mining Gene Expression Data for Positive and Negative Co-regulated Gene Clusters       J.Club
31 α NA  xMutant

2004-11:
01 α Results and biological interpretation of k-gOPSM  Seminar
06 α Current status of OPSM(sequential pattern mining)  Seminar
11 α Relevant work review of k-gOPSM  SysBiol

2004-10:
04 α High-order relation between gene regulatory module can be inferred from subspace clustering across large-scale gene expression data of yeast  Seminar
07 α Order-based subspace clustering  SysBiol
08 α Biological justification of order-preserving submatrix  xMutant
16 α Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem       J.Club

2004-09:
17 α The Biginning  xMutant

2004-08:
21 α Finding disease specific alterations in the co-expression of genes       J.Club
31 α      J.Club

2004-06:
12 α Transcriptional regultory networks in Saccharomyces cerevisiae       J.Club

2004-05:
04 α "Koogle, the finale" [Grip] Seminar

2004-04:
24 α Network-based approach for the comprehensive mapping between biological identifiers       J.Club

2004-03:
06 α Meta-databases providing collection of hyperlinks       J.Club

2004-01:
10 α A protein interaction map of Drosophila melanogaster       J.Club
27 α "Microarray data мȲ (Lung cancer, Thyroid)" [α] Seminar

2003-11:
29 α Genome-wide pathway analysis and visualization using gene expression data       J.Club

2003-10:
04 α Comparing protein abundance and mRNA expression levels on a genomic scale       J.Club

2003-08:
23 α Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer       J.Club

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