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2007-05:
09 ¼ on writing PathTalk  Seminar
25 ¼ BioCANDi renewal  Seminar
26 ¼ Discovery of principles of nature from mathematical modeling of DNA microarray data     J.Club

2007-04:
16 ¼ Network measures on tumor and normal datasets  Seminar

2007-03:
07 ¼ Measures on network stability  Seminar
28 ¼ Review on measures for comparing networks  Seminar
31 ¼ Not All Scale Free Networks are Born Equal     J.Club

2007-02:
09 ¼ Another 2 percent of BioCANDi  Seminar
10 ¼ Estimating p-values in small microarray experiments [p-valuet-test]      J.Club

2007-01:
06 ¼ How Scale-Free Are Biological Networks     J.Club
24 ¼ Network measures on TGRC datasets  Seminar

2006-12:
08 ¼ My Bioinformatics in 2007  Seminar
22 ¼ Random Graph Process  Seminar

2006-11:
11 ¼ Singular value decomposition of genome-scale mRNA length distribution reveals saymmetry in RNA gel electrophoresis band broadening [SVDasymmetric gaussian]    J.Club
15 ¼ PathTalk -- what is next  Seminar

2006-10:
25 ¼ Tumor and normal samples in Universal Sample Space  Seminar

2006-09:
30 ¼ Network motif identification in stochastic networks [network motifstochastic network motifmixture model]      J.Club

2006-07:
03 ¼ Prediction model for microbial infection in cultured cells [myco] Seminar
13 ¼ Issues on PathTalk  SysBiol
14 ¼ On parkinson-mouse data [parkinson] MAInfo

2006-06:
09 ¼ Discovering differential co-expression patterns between normal and tumor samples [DiffCoexpression] MAInfo
22 ¼ Issues on PathTalk [pathtalkkernel]    SysBiol
24 ¼ Reconstructing the pathways of a cellular system from genome-scale signals by using matrix and tensor computations [pathwayEVD]      J.Club

2006-05:
04 ¼ [PathTalk] Geodesic distance in pathway graph [PathTalk] SysBiol
20 ¼ Pathway recognition and augmentation by computational analysis of microarray expression data [PathPlus]      J.Club
25 ¼ PathTalks - reasearch plan [PathTalks] SysBiol
29 ¼ ̿ĵ (α л Ȳ) [BioCANDI]    Seminar

2006-04:
20 ¼ BioLattice: similarity of lattices [BioLattice] SysBiol
28 ¼ Differential co-expression patterns between normal and tumor samples [DiffCoexpression] MAInfo

2006-03:
03 ¼ Visualization and evaluation of structural relationship between gene clusters and biological pathways [PathTalk] SysBiol
18 ¼ A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae       J.Club
24 ¼ Prediction of microbial infection [Myco] MAInfo
30 ¼ Geodesic distance in pathway graph  SysBiol

2006-02:
03 ¼ PathTalk: Visualization and evaluation of structural relationship between gene clusters and biological pathways [PathTalk] SysBiol
06 ¼ Prediction of mycoplasma subtypes  Seminar
08 ¼ Order-preserving patterns in normal and tumor samples [DiffCoexpression] MAInfo
25 ¼ Standardizing global gene expression analysis between laboratories and acroos platforms       J.Club

2006-01:
11 ¼ Order-preserving patterns in normal and tumor samples [DiffCoexpression] MAInfo
13 ¼ PathTalk: diameters of gene sets on topological structure of pathways [PathTalk] SysBiol
16 ¼ Run BioCANDi from multiple calculation slaves  Seminar
25 ¼ Order-preserving patterns in normal and tumor samples [DiffCoexpression] MAInfo

2005-12:
21 ¼ Gene set having different sequence patterns [DiffCoexpression] MAInfo
23 ¼ PathTalk: Visualization and evaluation of structural relationship between gene clusters and biological pathways [PathTalk] SysBiol

2005-11:
02 ¼ Detection of microbial infection in cultured cells on the basis of mollecular profiling of host responses  MAInfo
21 ¼ Mycoplasma detection and subtyping  Seminar
25 ¼ DispLay: different sequential patterned moduLes in array data [DiffCoexpression] SysBiol
28 ¼ PathTalk -- where to go with our pathway databases? [PathTalk] Seminar

2005-10:
12 ¼ Detection of infection in Cultured Cells  MAInfo
21 ¼ Kullback-Leibler divergence to measure the biological relevance of given cluster  SysBiol

2005-09:
02 ¼ ̻   SysBiol
21 ¼ Required functions in Xperanto-BioCanDI  MAInfo
24 ¼ Biomarker discovery in microarray gene expression data with Gaussian processes       J.Club

2005-08:
03 ¼ Progress in BioCANDI  MAInfo
10 ¼ Required Analysis Modules in BioCANDI  MAInfo
12 ¼ Required analysis modules in Xperanto  SysBiol
20 ¼ Alignment of metabolic pathways       J.Club
24 ¼ Significant genes in GIST data  MAInfo

2005-07:
02 ¼ Supervised enzyme network inference from the integration of genomic data and chemical information [vertkernel]      J.Club
06 ¼ Significant genes in detecting mycoplasma infection of cell  MAInfo
08 ¼ Filters in Xperanto-BioCANDI  SysBiol
18 ¼ BioCANDI in Xperanto  Seminar

2005-06:
03 ¼ Learning Model for pathway extension  SysBiol
15 ¼ Analysis of Mycopasma infection data  MAInfo

2005-05:
04 ¼ MycoplasmaKFDA: ǥ ΰ ׽Ʈ  MAInfo
09 ¼ PathPlus - not a single pathway but also topology of pathways [SysBiol] Seminar
14 ¼ NETWORK BIOLOGY: UNDERSTANDING THE CELLS FUNCTIONAL ORGANIZATION       J.Club
18 ¼ BioCANDI2 in Xperanto  MAInfo
23 ¼ BioCANDI2 in Xperanto [MAInfo] Seminar

2005-04:
01 ¼ RunDEDS  SysBiol
06 ¼ Mycoplasma data м  MAInfo
29 ¼ Plan to complete PathPlus [pathplus] SysBiol

2005-03:
05 ¼ Pipeline of microarray data anlysis [MAInfo] Seminar
14 ¼ Inferring quantitative models of regulatory networks from expression data       J.Club
16 ¼ Complete report templete for microarray data analysis  MAInfo
26 ¼ Quick & simple: quality control of microarray data.     J.Club

2005-02:
04 ¼ Secondary analysis of arrary CGH data  xMutant
12 ¼ Workflow of array CGH data analysis [AppGen] Seminar
16 ¼ Report form of Microarray data analysis  MAInfo

2005-01:
14 ¼ array CGH data analysis  xMutant
17 ¼ GenRate: A Generative Model That Finds and Scores New Genes and Exons in Genomic Microarray Data [PSB]    J.Club
17 ¼ Sparse Factorizations of Gene Expression Guided by Binding Data [PSB]    J.Club
19 ¼ Processes of Microarray data analysis  MAInfo
24 ¼ Hidden Markov Models Approach to the Analysis of Array CGH Data     J.Club

2004-12:
08 ¼ [Myco] DNA Microarray ̿   MAInfo
11 ¼ Systematic benchmarking of microarray data classification: assessing the role of non-linearity and dimensionality reduction       J.Club
22 ¼ [PathPlus-human]  MAInfo

2004-11:
06 ¼ Analysis of array CGH data: from signal ratio to gain and loss of DNA regions       J.Club
10 ¼ [DNA Microarray ̿ ?] м   MAInfo
18 ¼ CGH-Explorer   SysBiol

2004-10:
06 ¼ Microarray expression data reflect the pathway knowledge  MAInfo
14 ¼ Determining differentially expressed genes in a microarray expression dataset  SysBiol
25 ¼ Prediction performance of pathway and its network characters [PathPlus] Seminar

2004-09:
01 ¼ [PathPlus] Performance index of prediction for pathway  MAInfo
11 ¼ Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph       J.Club

2004-07:
13 ¼ Prediction model for pathway extension using high throughput biological data [DataAnalysis] Seminar
21 ¼ PathPlus  MAInfo
24 ¼ TopNet: a tool for comapring biological subnetworks, correlating protein properties with topological statistics       J.Club

2004-06:
09 ¼ Big Picture of PathPlus  MAInfo

2004-05:
12 ¼ Plan to extend human pathway  MAInfo
22 ¼ Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data [segal]      J.Club
25 ¼ Evaluation methods for pathway prediction model [Xperanto] Seminar

2004-04:
07 ¼ PathPlus  MAInfo
17 ¼ Discovering molecular pathways from protein interaction and gene expression data [segal]      J.Club

2004-03:
10 ¼ Extraction and validation of pathway structure from Yeast genome society  MAInfo

2004-02:
24 ¼ Monthly report  MAInfo
28 ¼ ESPD: a pattern detection model underlying gene expression profiles       J.Club

2003-12:
20 ¼ Scoring clustering solutions by their biological relevance       J.Club

2003-11:
08 ¼ Using Bayesian Networks to Analyze Expression Data       J.Club
27 ¼ Analysis of Gastric data  MAInfo

2003-09:
20 ¼ The topology of the transcription regulatory network in the yeast, Saccharomyces cerevisiae       J.Club
25 ¼ Core group of gastric cancers  MAInfo

2003-08:
09 ¼ Subnetwork hierarchies of biochemical pathways       J.Club

2003-05:
29 ¼ Social Network Anlysis of DNA Microarray Data  Seminar

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