SNUBI: Snubi's Not Unics, Biomedical Informatics.: - 

Papers, Peer Reviewed

Submitted

 Many large worlds in a small world.(under review) Sunmin Yun, Hyun Wook Han and Ju Han Kim 

RS-ADR: A reference standard for detection of adverse drug reaction signals using electronic health records database

Comparing and Transforming Detailed Clinical Models using International Metadata Registry Standard. Yu Rang Park and  Ju Han Kim 

Composite CDE: modeling composite relationships between common data elements for representing complex clinical data.  Hye Hyun Kim, Yu Rang Park, Ju Han Kim.

Usefulness of a mobile information management system for hemodialysis patients: The prospect of participatory medicine: case control study. Ho Suk Ku; Hee-Joon Chung; Sung Ho Kim; Taehoon Change; Hye Hyeon Kim; Kye Hwa Lee; Ju Han Kim

Real-world treatment patterns of Renal Anemia in Hemodialysis patients: A Multicenter cohort study performed using DialysisNet (RRAHD study) Ho Suk Ku;Ju Han Kim

Comparative analysis of the efficacy of ARB for uric acid level changein asymptomatic hyperuricema Hun-Sung Kim, Hyunah Kim, BCPS3, Sue Hyun Lee, Ju Han Kim

Prompt Assessment of Seasonal Variation in Potassium Levels in Patients Undergoing Hemodialysis: A Multicenter Cohort Study Using DialysisNet Yunmi Kim; Seong Han Yun; Hoseok Koo; Subin Hwang; Hyo Jin Kim; Sunhwa Lee; Hyunjeong Baek; Hye Hyeon Kim; Kye Hwa Lee; Ju Han Kim; Ji In Park; Kyung Don Yoo

Link regulatory networks of gene modules to drug sensitivity reveals that Docetaxel and 5-FU have combinatory effects in advanced stage gastric cancer. Jeong Hoon Lee, Kye Hwa Lee, Sun Gyo Lim, Ju Han Kim*

Additional value of patient-reported outcomes (PROs) in predicting survival among patients with disease-free lung cancer: comparisons of machine learning techniques Jin Ah Shim, Young Ae Kim,  Ju Han Kim, Jong Mog Lee, Moon Soo Kim, Young Mog Shim, Jae Ill Zo, Young Ho Yun

Comprehensive analysis of Alternative Polyadenylation in Differentiated Thyroid Cancer. Ji Yeon Park, Jin Wook Yi, Brian Y. Ryu1, Byoung Ae Kim, Min Jun Kim, Kyu Eun Lee, Ruijia Wang, Bin Tian*, Ju Han Kim*

Identification of clinically relevant genes from mRNA and splicing changes of skin cutaneous melanoma. Ji Yeon Park, Brian Y. Ryu, Chan Hee Park, Bin Tian, Ju Han Kim 2016;():- (PMID:) - ps, bitec

Radiogenomc analysis of triple negative breast cancer: features of radiomics and transcriptomics Sung Ui Shin, Jeong Hoon Lee, Ju Han Kim, Woo Kyung Moon

● Identification of genetic causative variants in Korean red blood cell enzyme deficiency by multi-gene target sequencing and tandem mass spectrometry

● The additional value of patient-reported outcomes (PROs) in predicting survival among patients with disease-free lung cancer: comparisons of five-machine learning techniques (MLTs)

● Identifying genetic variants associated with ritodrine induced pulmonary edema. Seung Mi Lee†, Yoomi Park†, Young Ju Kim, Han-Sung Hwang, Heewon Seo, Byoung Joo Min, So Yeo Kim, Young Mi Jung, Ju Han Kim*, Joong Shin Park* †equally contributed, *corresponding authors

Identifying genetic variants underlying medication-induced osteonecrosis of the jaw. Kye Hwa Lee, Su-Hwan Kim, Chang Hyen Kim, Byung Joo Min, Grace Juyun Kim, Younggyun Lim, Hun-Sung Kim, Kang-Min Ahn*, Ju Han Kim* 2019;:   


2019

Star allele-based haplotyping versus gene-wise variant burden scoring for predicting 6-mercaptopurine intolerance in pediatric ALL patients. Yoomi Park, Hyery Kim, Jung Yoon Choi, Sunmin Yun, Byung-Joo Min, Myung-Eui Seo, Ho Joon Im, Hyoung Jin Kang, Ju Han Kim Frontiers in Pharmacology 2019 June 11;10:654  (PMID:31244663)

 Clinical MetaData Ontology: A Simple Classification Scheme for Data Elements of Clinical Documents Based on Semantics Hye Hyeon Kim, Yu Rang Park, Kye Hwa Lee, Young Soo Song,  Ju Han Kim BMC Medical Informatics and Decision Making 2019;:

● Discovery of donor genotype associated with long-term survival of patients with hematopoietic stem cell transplantation in refractory acute myeloid leukemia. Chan-Young Ock, Heewon Seo, Dae-Yoon Kim, Eun-Young Song, Inho Kim, Sung-Soo Yoon, Ju Han Kim*, Youngill Koh* Leukemia and Lymphoma 2019;: (PMID:30507323)*corresponding authors -leuk, ps

Application of Deep Learning to the Diagnosis of Cervical Lymph Node Metastasis from Thyroid Cancer with CT. Jeong Hoon Lee, Eun Ju Ha*, Ju Han Kim European Radiology 2019 Mar 15;:  (PMID:30877461)

Clinical Genome Data Model Provides Interactive Clinical Decision Support for Precision Medicine. Hyo Jung Kim, Hyeong Joon Kim, Yoomi Park, Woo-Seung Lee, Younggyun Lim, Ju Han Kim.  Scientific Reports 2019;:

● Molecular diagnosis of hereditary spherocytosis by multi-gene target sequencing in Korea: matching with osmotic fragility test and presence of spherocyte. Hyoung Soo Choi, Qute Choi,.. , Ju Han Kim*, Dong Soon Lee* Orphanet Journal of Rare Diseases 2019;14:114 *corresponding authors   (PMID:31122244)

 PNH clone size by flow cytometry and its correlation to PIG Gene Mutation. Dajeong Jeong; Hee Sue Park; Seongmin Choi; Heewon Seo; Sung-Min Kim; Kyongok Im; Jiwon Yun; Jung-Ah Kim; Kwangsoo Kim; Ju Han Kim; Dong Soon Lee  Blood 2018;132(Suppl 1):4889

Development of controlled vocabulary-based adverse drug reaction signal dictionary for integrated pharmacovigilance for multi-center electronic health record-based pharmacovigilance. Suehyun Lee, Jongsoo Han, Grace Juyun Kim, Kye Hwa Lee, Rae Woong Park, John Hoon Rim, Jooyoung Cho, Ju Han Kim Drug Safety 2019 May;42(5):657-670  (PMID:30649749) -ps

● Personal genome testing in physicians improves attitudes towards pharmacogenomic approaches. Kye Hwa Lee, Byung Joo Min, Ju Han Kim PLoS One 2019 March 28;14(3):e0213860  (PMID:30921347)

2018

● Developing a multi-center clinical data mart of ACEi and ARB for Real-World Evidence (RWE). Hun-Sung Kim, Sue Hyun Lee, Tong Min Kim, Ju Han Kim Clinical Hypertension 2018;24:18

● Clinical experiences and case review of angiotensin II receptor blocker-related angioedema in Korea. Hyunah Kim, Seo Yeon Baik, So Jung Yang, Tong Min Kim, Seung-Hwan Lee, Jae-Hyoung Cho, In Young Choi, Ju Han Kim, Kun-Ho Yoon, Hun-Sung Kim. Basic Clin Pharmacol Toxicol 2018 July 13;:(PMID:30003686)

Simple postoperative-AKI risk (SPARK) classification in major non-cardiovascularsurgery: suggestions for planning an AKI monitoring strategy.  Sehoon Park, *Hyun-Jeong Cho, Seok Woo Park, Soojin Lee, Kwang Soo Kim, HyungJin Yoon, Jiwon Park, Yunhee Choi, Suehyun Lee, Ju Han Kim, Sejoong Kim, Dong KiKim, Kwon Wook Joo, Yon Su Kim, and Hajeong Lee  JASN 2018 December;: ASN.2018070757 (PMID:30563915)

● Proceed with caution when using real world data and real world evidence. Hun-Sung Kim and Ju Han Kim JKMS 2018 Jan 28;34(4):e28 (PMID:30686950)

● Deep learning-based computer-aided diagnosis system for localization and diagnosis of metastatic lymph nodes on ultrasound: A pilot study. Jeong Hoon Lee, Jung Hwan Baek, Ju Han Kim, Woo Hyun Shim, Sae Rom Chung, Young Jun Choi, Jeong Hyun Lee  Thyroid 2018  Oct;28(10):1332-1338   (PMID:30132411)

Comparative genomic analysis of Bacillus subtilis KCTC 3135T and variation in cell wall genes. Seonjoo Ahn, Sangmi Jun, Hyun-Joo Ro, Ju Han Kim*, Seil Kim* Journal of Microbiology and Biotechnology 2018 Sept. 3;:(PMID:30196596)

● Is NF2 a key player in the differentially expressed gene of spinal cord ependymoma compared with the intracranial ependymoma? Ki Tae Kim#, Chang-Hyun Lee#, Chun Kee Chung*, Ju Han Kim* World Neurosurgery 2018 Oct;118:e906-e917 (PMID:30031196)

Real-world evidence versus randomized controlled trial: Clinical research based on electronic medical recordsHun-Sung Kim, Sue Hyun Lee, Ju Han Kim* JKMS 2018 Aug 20:33(34);e213 (PMID:30127705)

● South Korean geriatrics on Beers Criteria medications at risk of adverse drug events. Grace Juyun Kim, Kye Hwa Lee, Ju Han Kim  PLoS One 2018 Mar. 15:13(3);e0191376 (PMID: 29543860) - ps, cdm

 The effects of alternative splicing on miRNA binding sites in bladder cancer. Seonggyun Han, Dongwook Kim, Manu Shivakumar, Young-ji Lee, Tullika Garg, Ju Han Kim*, Dokyoon Kim*,  Younghee Lee PLoS One 2018 Jan 4:13(1);e0190708 (PMID:29300757)

● Deleterious Genetic Variants in Ciliopathy Genes Increase Risk of Ritodrine-induced Cardiac and Pulmonary Side Effects. Heewon Seo, Eun Jin Kwon, Young-Ah You, Yoomi Park, Byung Joo Min, Kyunghun Yoo, Han-Sung Hwang, Ju Han Kim, Young Ju Kim BMC Med Genomics 2018;11(1):4 (PMID:29368655) - ps

Post-Stroke Emotional Disturbances and a Tryptophan Hydroxylase 2 Gene Polymorphism. Ju Han Kim, Smi Choi Brain and Behavior 2018 Feb:8(2);e00892  (PMID: 29484259)

2017

Post-translational control of T-cell development by the ESCRT protein CHMP5. Stanley Adoro , Kwang Hwan Park , Sarah Bettigole, Raphael Lis, Hee Rae Shin, Heewon Seo, Ju Han Kim, Klaus-Peter Knobeloch, Jae-Hyuck Shim, Laurie Glimcher. Nature Immunology  2017 Jul;18(7):780-790  (PMID:28553951) -

 ● Gene expression profiling of calicifications in  breast cancer. Sung Ui Shin, Jeonghoon Lee, Ju Han Kim, Won Hwa Kim, Sung Eun Song, A-jung Chu, Hoe Suk Kim, Wonshik Han, Han Suk Ryu, Woo Kyung Moon  Scientific Reports 2017;7:11427  (PMID:28900139) 

 ● Small molecule-based lineage switch of human adipose-derived stem cells into neural stem cells and functional GABAergic neurons. Jihye Park, Nayeon Lee, Jaekwang Lee, Eun Kyung Choe, Min Kyung Kim, Jeonghoon Lee, Min Soo Byun, Myong-Wuk Chon, Seong Who Kim, C. Justin Lee, Ju Han Kim, Jun Soo Kwon, Mi-Sook Chang  Scientific Reports 2017;7:10166  (PMID:28860504) -

Idiopathic Hypereosinophilia Is Clonal Disorder? Clonality Identified by Targeted Sequencing. Jee-Soo Lee, Heewon Seo, Kyongok Im, Si Nae Park, Jung-Ah Kim, Seon Young Kim, Joon-hee Lee, Sunghoon Kwon, Miyoung Kim, Insong Koh, Seungwoo Hwang, Heung-Woo Park, Hye-Ryun Kang, Ju Han Kim, and Dong Soon Lee. PLoS One 2017 Oct 31:12(10);e0185602 (PMID:29088303) -

 ● Predicting Treatable traits for Long-Acting Bronchodilators in Patients with Stable COPDJieun Kang*, Ki Tae Kim*, Ji-Hyun Lee, Eun Kyung Kim, Tae-Hyung Kim, Kwang Ha Yoo, Jae Seung Lee, Woo Jin Kim, Ju Han Kim†, Yeon-Mok Oh  Int J COPD 2017;12:3557-3565 (PMID:29263660) - 

● Evaluation of exome variants in sequencing error-prone regions from Ion Proton. Heewon Seo, Yoomi Park, Byung Joo Min, Myung Eui Seo, Ju Han Kim PLoS One 2017 July 24;12(7):e0181304  (PMID:28742110) -  bitech, leuk

APEX1 polymorphism and mercaptopurine-related early onset neutropenia in pediatric acute lymphoblastic leukemia. Hyery Kim*, Heewon Seo*, Yoomi Park, Byung-Joo Min, Myung-Eui Seo, Kyung Duk Park, Hee Young Shin, Ju Han Kim†, and Hyoung Jin Kang†  Cancer Treatment and Research 2017 Sep 4:; (PMID:28882023) - *equally contributed, †corresponding authors -bitec, ncrc 

Use of moderate-intensity statins for baseline LDL cholesterol over 190 mg/dL in Korea. Hun Sung Kim, Ju Han Kim. Basic & Clinical Pharmacology & Toxicology 2017 Oct;121(4):272-278  (PMID:28165667) -

Evolution of Translational Bioinformatics: Lessons Learned from TBC 2016. Kye Hwa Lee and Ju Han Kim. BMC Medical Genomics  2017 May 24;10(suppl 1):32  (PMID:28589861) - ps, bitec

Gene network analysis for triple negative breast neoplasms by using gene expression data. Hee Chan Jung, Sung Hwan Kim, Jeong Hoon Lee, Ju Han Kim, Sung Won Han J Breast Cancer 2017 Sep;20(3):240-245  (PMID:28970849)

 Markers of disease and steroid responsiveness in paediatric idiopathic nephrotic syndrome: Whole-transcriptome sequencing of peripheral blood mononuclear cells. Hee Gyung Kang*, Heewon Seo*, Jae Hyun Lim, Jong Il Kim, Ju Han Kim#, Hae Il Cheong, Il-Soo Ha# Journal of International Medical Research 2017 Jun;45(3):948-963 (PMID:28639503)  bitec *equally contributed # corresponding authors

 Using a Tablet Device to Compensate for Underestimation of Cognitive Function due to 2 Impaired Dominant Hand Function in Patients with Stroke.  Jung Yoon Kim, Bo Ra Kim, Ilhyang Kang, Myung-Eun Kye, Ju Han Kim, Jieun E. Kim, Sujung Yoon, In Kyoon Lyoo, Soo Mee Lim  International Journal of Human Computer Interaction 2017;33(5): 423-427

Standard-based Comprehensive Detection of Adverse Drug Reaction Signals from  Nursing Statements and Laboratory Results in Electronic Health Records. Suehyun Lee, Jiyeob Choi, Hun-Sung Kim, Grace Juyun Kim, Kye Hwa Lee, Chan Hee Park, Jongsoo Han, Dukyong Yoon, Man Young Park, Raewoong Park, Ju Han Kim JAMIA 2017 Jan 13;24(4):697-708  (PMID:28087585) - ps. cdm

 Role of preemptive genotyping in preventing serious adverse drug events in South Korean patients. Grace Juyun Kim, Soo Youn Lee, Ji Hye Park, Brian Y. Ryu, Ju Han Kim  Drug Safety 2017 Jan;40(1):65-80  (PMID:27638658) - ps. SNUH, bitec

 Perceived Needs for the Information Communication technology (ICT)-based Personalized Health Management Program, and Association Among Information Provision, Health-Related Quality of Life (HRQOL), and Decisional Conflict in Cancer PatientsJin Ah Sim, Yoon Jun Chang, Ae Sun Shin, Dong-Yong Noh, Wonshik Han, Han-Kwang Yang, Hyuk-Joon Lee, Young Whan Kim, Young Tae Kim, Seung-Yong Jeong, Jung-Hwan Yoon, Yoon Jun Kim, Dae Seog Heo, Tae-You Kim, Do-Youn Oh, Hong-Gyun Wu, Hak Jae Kim, Eui Kyu Chie, Keon Wook Kang, Ju Han Kim, Young Ho Yun Psycho-Oncology 2017;26(11):1810-1817 (PMID:28054737) -

Upregulation of SLC2 (GLUT) Family Genes is Related to Poor Survival Outcomes in Papillary Thyroid Carcinoma: Analysis of Data from The Cancer Genome Atlas. Young Jun Chai, M.D.; Jin Wook Yi; So Won Oh; Young A,Kim; Ka Hee Yi ; Ju Han Kim; Kyu Eun Lee. Surgery 2017 Jan;161(1):188-194 (PMID:27842912) bitec

● Altered miRNA expression in lung tissues from chronic obstructive pulmonary disease. Woo Jin Kim, Jae Hyun Lim, Yoonki Hong, Seok-Ho Hong, Jae Seung Lee, Sang Do Lee, Yeon-Mok Oh, Ju Han Kim Molecular & Cellular Toxicology 2017 June;13:207-212  

TRAPR: R package for statistical analysis and visualization of RNA-Seq data. Jae Hyun Lim, Soo Youn Lee and Ju Han Kim  Genomics and Informatics 2017;15(1):51-53 (PMID:28416950) -

2016

Genome Sequence Variability Predicts Drug Precautions and Withdrawals from the Market. Kye Hwa Lee, Su Youn Baik, Soo Youn Lee, Chan Hee Park, Paul J. Park, Ju Han Kim PLoS One 2016 Sep 30;11(9):e0162135  (PMID:27690231)ps , bitec

 ● Rare high-impact disease variants: properties and identifications. Leeyoung Park and Ju Han Kim Genet Res 2016 Mar 21;98:e6 (PMID:26996452)

Impact of Statins on Risk of New Onset Diabetes Mellitus: a Population-Based Cohort Study Using the Korean National Health Insurance Claims Database.  Jimin Lee, Yoojin Noh, Sooyoung Shin, Hong-Seok Lim, Raewoong Park, Soo Kyung Bae, Euichaul Oh, Grace Juyun Kim, Ju Han Kim, Sukhyang Lee. Ther Clin Risk Manag 2016 Oct 11:12;1533-1543 (PMID:27785041) 

 Significance of the BRAF mRNA expression level in papillary thyroid carcinoma: An analysis of The Cancer Genome Atlas dataYoung Jun Chai, Jin Wook Yi, Hyeon-Gun Jee, Young A Kim, Ju Han Kim, Mingzhao Xing, Kyu Eun Lee PLoS One 2016 Jul;11(7):e0159235  (PMID:27410688) - bitec

Association of FAT1 mutation with overall survival in patients with human papillomavirus-negative head and neck squamous cell carcinoma. Ki Tae Kim, Bo-Sung Kim, Ju Han Kim Head & Neck 2016 Apr;38(Suppl 1):E2021-2029 (PMID:26876381) -ncrc , bitec

Triple Antiplatelet Therapy of Cilostazole or Sarpogrelate with Aspirin and Clopidogrel after Percutaneous Coronary Intervention: A Retrospective Cohort Study Using Korean National Health Insurance Claim Database. Yoojin Noh, Jimin Lee, Sooyoung Shin, Hong-Seok Lim, Soo Kyung Bae, Euichul Oh, Grace Juyun Kim, Ju Han Kim, Sukhyang Lee. PLoS One 2016 Mar 3;11(3):e0150475  (PMID:26939062)

Role of BRAF and RAS Mutations on Extrathyroidal Extension in Papillary Thyroid Cancer. Ji Yeon Park, Jin Wook Yi, Chan Hee Park, Younggyun Lim, Kye Hwa Lee, Kyu Eun Lee, Ju Han Kim  Cancer Genomics & Proteomics 2016;13:171-182 (PMID:26912807) -ncrc , heal, bitec

 Semantic signature: comparative concept lattice analysis for gene expression microarray data on a semantic space.  Jihun Kim, Keewon Kim, Ju Han Kim Computational and Mathematical Methods in Medicine 2016:2016;5174503 (PMID:27242916)-   ncrc , bitec

Statin-related aminotransferase elevation according to baseline aminotransferases level in real practice in KoreaHun-Sung Kim, S. H. Lee, H. Kim, S.-H. Lee, J. H. Cho, H. Lee, H. W. Yim, S.-H. Kim, I.-Y. Choi, K.-H. Yoon, Ju Han Kim Journal of Clinical Pharmacy and Therapeutics 2016 Jun;41(3):266-272 (PMID:27015878) -ncrc , bitec

 Analysis and comparison of statin prescription patterns and outcomes according to clinical department.  Kim HS, Kim H, Lee H, Park B, Park S, Lee SH, Cho JH, Song H, Kim JH, Yoon KH, Choi IY  Journal of Clinical Pharmacy and Therapeutics 2016 ;41:70-77 (PMID:26791968-*

 Comparative analysis of the efficacy of low- and moderate-intensity statins in Korea. Hun-Sung Kim, Hyeseon Lee, Bumjoon Park, Seungho Park, Hyunah Kim, Seung-Hwan Lee, Jae Hyoung Cho, Kun-Ho Yoon, Bong-Yun Cha, Ju Han Kim, In Young Choi International Journal of Clinical Pharmacology and Therapeutics 2016 Nov;54(11):864-871 (PMID:27487366)

A normalization method for combination of laboratory test results from different electronic healthcare databases in a distributed research network. Dukyong Yoon, Martijn J. Schuemie, Ju Han Kim, Dong Ki Kim, Man Young Park, Eun Kyoung Ahn, Eun-Young Jung, Dong Kyun Park, Soo Yeon Cho, Dahye Shin, Yeonsoo Hwang, Rae Woong Park   Pharmacoepidemiology and Drug Safety 2016 Mar;25(3):307-316  (PMID:26527579)

● GEE: an informatics tool for Gene Expression data Explore. Soo Youn Lee, Chan Hee Park, Jun Hee Youn, Sunmin Yun,  Ju Han Kim Healthcare Informatics Research 2016;22(2):81-88 (PMID:27200217) ncrc, heal

2015

MELLO: Medical Lifelog Ontology for data terms from self-tracking and life-log devices.  Hye Hyeon Kim, Soo Youn Lee, Su Youn Baik, and Ju Han Kim   International Journal of Medical Informatics 2015 Dec;84(12):1099-100 (PMID:26383495) - bitec/tta, heal

Correlation between drug market withdrawals and socioeconomic, health, and welfare indicators worldwide.  Kye Hwa Lee, Gracy Juyn Kim, and Ju Han Kim JKMS 2015;30(11):1567-1576 (PMID:26538999) - ncrc, bitec

Genomic Evidence of Reactive Oxygen Species Elevation in Papillary Thyroid Carcinoma with Hashimoto Thyroiditis.  Jin Wook Yi, Ji Yeon Park, Ji-Youn Sung, Sang Hyuk Kwak, Jihan Yu, Ji Hyun Chang, Jo-Heon Kim, Sang Yun Ha, Eun Kyung Paik,Woo Seung Lee, Kyu Eun Lee, Ju Han Kim Endocrine Journal 2015 Oct 31;62(10):857-877 (PMID:26211532)  - ncrc, bitec
 Ctbp2 Modulates NuRD-Mediated Deacetylation of H3K27 and Facilitates PRC2-Mediated H3K27me3 in Active Embryonic Stem Cell Genes During Exit from Pluripotency. Kim TW, Kang BH, Jang H, Kwak S, Shin J, Kim H, Lee SE, Lee SM, Lee JH, Kim JH, Kim SY, Cho EJ, Kim JH, Park KS, Che JH, Han DW, Kang MJ, Yi EC, Youn HD Stem Cells 2015 Aug;33(8):2442-55 (PMID:25944056)  -*

hiHMM: Bayesian non-parametric joint inference of chromatin state maps. (SW) Kyung-Ah Sohn, Joshua W. K. Ho, Djordje Djordjevic, Peter J. Park* and Ju Han Kim*  Bioinformatics 2015;31(13):2066-2074 (PMID:25725496) -ncrc *corresponding authors

An advanced framework for identifying causal models of complex diseases based on relative pairs. Leeyoung Park* and  Ju Han Kim* Genetics  (PMID:25701286)- ncrc *corresponding authors

Knowledge Boosting: A graph-based integration with multi-omics data and genomic knowledge for cancer clinical outcome prediction. Dokyoon Kim, Je-Gun Joung, Kyung-Ah Sohn, Hyunjung Shin, Marylyn D. Ritchie, Ju Han Kim JAMIA 2015 Jan;22(1):109-120 (PMID:25002459)  - ncrc, bitec

Connecting the dots in translational bioinformatics: TBC 2014 collectionJu Han Kim BMC Medical Genomics 2015, 8(Suppl 2):I1 (29 May 2015): (PMID:26043981)  - ncrc, bitec

Interpretation of personal genome sequencing data in terms of disease ranks based on mutual information. Young-Ji Na, Kyung-Ah Sohn and Ju Han Kim BMC Medical Genomics 2015, 8(Suppl 2):S4 (29 May 2015) (PMID:26045178)  heal, TTA, bitec

RCARE: RNA Sequence Comparison and Annotation for RNA Editing. Soo Youn Lee, Je-Gun Joung, Chan Hee Park, Ji Hye Park, Ju Han Kim BMC Medical Genomics 2015, 8(Suppl 2):S8 (29 May 2015) (PMID:26043858)  - healbitec

Comprehensive analysis of transcriptome sequencing data in the lung tissues of COPD subjects. Woo Jin Kim§, Jae Hyun Lim§, Jae Seung Lee, Sang Do Lee*Ju Han Kim*, Yeon-Mok Oh* International Journal of Genomics 2015;2015:206937. doi: 10.1155/2015/206937. Epub 2015 Mar 5 (PMID:25834810) - ncrc, bitec *corresponding authors

Current clinical status of and obstacles to telehealth in Korea. Hun-Sung Kim, Hyu    nah Kim, Sue Hyun Lee, Kye Hwa Lee, Ju Han Kim  Healthcare Informatics Research 2015;(): (PMID:26618030)- bitec heal

2014

 Comparative analysis of metazoan chromatin architecture. Joshua Ho, Youngsook Jung, Tao Liu, Burak Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, et al. Nature 2014 August 28;512(7515):449–452 (PMID:25164756) - ncrcbitec 

Using mobile phones in healthcare management for the elderly. Hun-Sung Kim, Kye Hwa Lee, Hyunah Kim, Ju Han Kim Maturitas 2014;79:381-388 (PMID:25270725)  - ncrc, bitec  

 Prognostic Significance of Biallelic Loss of PTEN in Clear Cell Renal Cell Carcinoma.  Hee Jin Lee, Ho Yun Lee, Jeong Hee Lee, Hajeong Lee, Guhyun Kang, Joon Seon Song, Jun Kang, Ju Han Kim Journal of Urology 2014 Sep;192(3):940-946 (PMID:24704020)

 Standard based Deposit Guideline for Distribution of Human Biological Materials in Cancer PatientsHwa Jeong Seo, Hye Hyeon Kim, Jeong Soo Im, Ju Han Kim Asian Pacific Journal of Cancer Prevention 2014;15(14):5545-5550 (PMID:25081662)  - ncrc, bitec

 Incorporating inter-relationships between different levels of genomic data into cancer clinical outcome prediction. Dokyoon Kim, Hyunjung Shin, Kyung-Ah Sohn, Anurag Verma, Marylyn D. Ritchie, Ju Han Kim  Methods 2014;67:344-353 (PMID:24561168)  - ncrc, bitec

New Horizons in Translational Bioinformatics: TBC 2013 collectionJu Han Kim BMC Medical Genomics 2014;7(Suppl 1):I1 (PMID:25078853 )  - ncrc, bitec

Trough concentration over 12.1 mg/L is a major risk factor of vancomycin-related nephrotoxicity in patients with therapeutic drug monitoringHyeKyung Han, Hyungmi An, Kwang-Hee Shin,  Donghoon Shin, Sue Hyun Lee, Ju Han Kim, Sang-Heon Cho, In-Jin Jang, Kyung-Sang Yu, Kyoung Soo Lim Therapeutic Drug Monitoring 2014 Oct;36(5):606-611 (PMID:24577126) - ncrc

 Future prospects of health management system using cellular phone. Kim, Hun-Sung; Hwang, Yunji, Lee, Jae-Ho; Oh, Hye young; Kang, Hyoseung; Kim, Yi-Jun; Kwon, Hyeon Yoon; Kim, Hyunah; Park, Rae Woong; Ju Han Kim Telemedicine and e-Health 2014 Jun;20(6):544-551 (PMID:24693986)

 Integrated Analysis of microRNA-target Interactions with Clinical Outcomes for CancersJe-Gun Joung, Dokyoon Kim, Su-Yeon Lee, Hwa Jung Kang, Ju Han Kim BMC Medical Genomics 2014;7(Suppl 1):S10 (PMID:25079112)  - ncrc, bitec

 Clinical Data Element Ontology for unified indexing and retrieval of data elements across multiple metadata registries. Senator Jeong*, Hye Hyeon Kim*, Yu Rang Park, Ju Han Kim Healthcare Informatics Research 2014 Oct;20(4):295-303 *equally contributed (PMID:25405066)- tta, bitec

DialysisNet: Application for Integrating and Management Data Sources of Hemodialysis Information by Continuity of Care Record.  Ho Suk Ku, Sungho Kim, HyeHyeon Kim, Hee-Joon Chungk, Yu Rang Park, Ju Han Kim  Healthcare Informatics Research 2014;20(2):145-151 (PMID:24872913)- ncrc, ccr

 Health Avatar: an informatics platform for personal and private big data. Ju Han Kim  Healthcare Informatics Research 2014;20(1):1-2 (PMID:24627812)- ncrc

 Online learning for classification of Alzheimer’s disease based on cortical thickness and hippocampal shape analysisGa-Young Lee, Jeonghun Kim, Ju Han Kim, Kiwoong Kim, Joon-Kyung Seong  Healthcare Informatics Research 2014 Jan;20(1):61-68 (PMID:24627820)- ncrc

 Lifelog Agent for Human Activity Pattern Analysis on Health Avatar PlatformYongjin Kwon, Kyuchang Kang, Changseok Bae, Hee-Joon Chung, Ju Han Kim  Healthcare Informatics Research 2014;20(1):69-75 (PMID:24627821)- ncrc

 CCR+: metadata based extended personal health record data model interoperable with the ASTM CCR standard. Yu Rang Park, Young Jo Yoon, Ju Han Kim Healthcare Informatics Research 2014;20(1):39-44 (PMID:24627817)- ncrc, ccr

2013

 Yin and Yang of disease genes and death genes between reciprocally scale free biological networks. Hyun Wook Han§, Jung Hun, Ohn§, Jisook Moon*, Ju Han Kim*§eqully contributed  Nucleic Acid Research 2013 Nov 1;41(20):9209-9217(PMID:23935122) - ncrc, stem

 Relative impact of multi-layered genomic data on gene expression phenotypes in serous ovarian tumors. Kyung-Ah Sohn, Dokyoon Kim, Jaehyun Lim, Ju Han Kim BMC Systems Biology  2013;7(Suppl 6):S9 (PMID:24521303 )- ncrc, ccr+

A quantitative method to assess prescribing patterns from electronic health recordsDukyong Yoon Inwhee Park, Martijn J. Schuemie, Man Young Park, Ju Han Kim, and Rae Woong Park PLoS One 8(10): e75214.  (PMID:24130689) - ncrc

 Understanding cooperativity of microRNAs using microRNA association networks. Young-Ji Na and Ju Han Kim BMC Genomics 2013, 14(Suppl 5):S17 (PMID:24564498)-  ncrc, ccr+

 Intra-relation Reconstruction from Inter-relation: miRNA to Gene ExpressionDokyoon Kim§, Hyunjung Shin§, Su-Yeon Lee, Ju Han KimBMC Systems Biology  2013;7(Suppl 2):S8 (PMID:24521265) - ncrc, ccr+

 Translational Bioinformatics has now come of age: TBC 2012 collectionJu Han Kim BMC Medical Genomics 2013;6(Suppl 2):I1 (PMID:23819773)  - ncrc

 Certification for Physicians in Biomedical InformaticsJu Han Kim Healthcare Informatics Research 2013;19(1):1-2 (PMID:23626911)- ncrc

Establishing semantic interoperability of biomedical metadata registries using extended semantic relationships. (Slide) Yu Rang Park, Young Jo Yoon, Ju Han Kim Stud Health Technol Inform 2013;192:618-621MedInfo 2013 IOS Press (ISBN ), Copenhagen, Denmark.  (PMID: 23920630) - ncrc

 Extracting of Coordinated Patterns of DNA Methylation and Gene Expression in Ovarian Cancer. Je-Gun Jeong, Dokyoon Kim, Kyung Hwa Kim, Ju Han Kim J Am Med Inform Assoc 2013 Jul-Aug;20(4):637-42  doi:10.1136/amiajnl-2012-001571 (PMID: 23599224) - ncrc, ccr+

 Gastrointestinal Tuberculosis is not associated with Gastric Acid Suppression by Proton Pump Inhibitors: A Retrospective Cohort StudyKyoung Sup Hong, Seung Joo Kang, Jong Kyoung Choi, Ju Han Kim, Heewon Seo, Suehyun Lee, Jae-Woo Jung, Hye-Ryun Kang, Sang-Heon Cho, Joo Sung Kim World Journal of Gastroenterology  2013 January 14; 19(2): 258-264 (PMID:23345949) - ncrc

Genome-wide characterization of the relationship between essential and TATA-containing genesHyun Wook Han, Sang Hue Bae, Yun-Hwa Jeoung, Ju Han Kim*, Jisook Moon* FEBS Lett. 2013 March; 587(5):444-451 (PMID:23337875)*corresponding authors

 Annotation of candidate somatic mutations in acute myeloid leukemia with whole exome sequencing using concept lattice analysis.  Kye Hwa Lee, Jae Hyeun Lim, Ju Han Kim  Genomics and Informatics 2013 March;11(1):38-45 (PMID:23613681)- ncrc

 Bioinformatics approaches for the identification and annotation of RNA editing sitesSoo Youn Lee and Ju Han Kim Journal of Genetic Medicine 2013 Jun 10(1):27-32 (PMID:)- ncrc 

 AnsNGS: an Annotation system to sequence variations of Nextnext-Ggeneration Sequencing data for disease-related phenotypes. Young-Ji Na, Yonglae Cho, Ju Han Kim  Healthcare Informatics Research 2013;19(1):50-55 (PMID:23626918)- ncrc, ccr

2012

 Biological Knowledge Assembly and InterpretationJu Han Kim  PLoS Computational Biology 2012;8(12):e1002858  (PMID: 23300429- ncrc

 MicroRNA-centric measurement improves functional enrichment analysis of co-expressed and differentially expressed microRNA clusters. Su Yeon Lee, Kyung-Ah Sohn, Ju Han Kim  BMC Genomics  2012;13 Suppl 7:S17 (PMID: 23281707- ncrc,  ccr

 Synergistic effect of different levels of genomic data for cancer clinical outcome prediction. Dokyoon Kim§, Hyunjung Shin§*, Young Soo Song, Ju Han KimJournal of Biomedical Informatics 2012 December;45(6):1191-1198 (PMID: 22910106- ncrc

Prediction of microbial infection of cultured cells using DNA microarray gene-expression profiles of host responsesYu Rang Park§, Tae Su Chung§, Young Joo Lee, Yeong Wook Song, Eun Young Lee, Yeo Won Sohn, Sukgil Song, Woong Yang Park, Ju Han Kim. J Korean Med Sci 2012 October;27:1129-1136 (PMID: 23091307 §eqully contributed - ncrc

 Bi-directional measure of semantic similarity for optimizing biological and clinical analyses. (PDF) Sang Jay Bien§, Chan Hee Park§, Hae Jin Shim, Woongcheol Yang, Jihun Kim, Ju Han Kim J Am Med Inform Assoc 2012;19(5):765-774 (PMID: 22374934)   - §eqully contributed ncrc kca

● Differential Diagnosis of Lupus and Primary Membranous Nephropathies by IgG Subclass Analysis. Young Soo Song, Kyueng-Whan Min, Ju Han Kim, Gheun-Ho Kim, Moon Hyang Park  Clinical Journal of the American Society of Nephrology 2012 December;7(12):1947-1955 doi: 10.2215/CJN.04800511 (PMID: 23024158)-*

 Mesenchymal Stem Cells Transfer Mitochondria to the Cells with Virtually Absent Mitochondrial Function but Not to the Cells Harboring Pathogenic Mitochondrial DNA Mutations. Young Min Cho , Ju Han Kim , Mingoo Kim , Su Jin Park , Sang Hyuk Koh , Hyo Seop Ahn , Gyeong Hoon Kang , Jung-Bin Lee , Kyong Soo Park , Hong Kyu Lee PLoS One 2012 March;7(3):e32778 (PMID:22412925)  - ncrc

 Detection of Adverse Drug Reaction Signals Using an Electronic Health Records Database: Comparison of the Laboratory Extreme Abnormality Ratio (CLEAR). DY Yoon, MY Park, NK Choi, BJ Park, Ju Han Kim, RW Park. Clinical Pharmacology and Therapeutics 2012 March;91:467-474 (PMID: 22237257-*

 Construction of an open-access QT database for detecting the proarrhythmic potential of marketed drugs: ECG-ViEW. MY Park, D Yoon, NK Choi, J Lee, K Lee, HS Lim, BJ Park, JH Kim, RW Park. Clinical Pharmacology and Therapeutics 2012 Sep;92(3):393-396 doi:10.1038/clpt.2012.93 (PMID: 22828716)

 Establishing semantic interoperability in the course of clinical document exchange using international standard for metadata registryYu Rang Park, Hyehyeon Kim, Eun Yang An, Ju Han Kim, Hyung H Kim, Raewoon Park, Dongkyun Park, Eun-Young Jung, Ju Han Kim  J Korean Med Assoc August 2012;55(8):729-740 - ncrc, ccr

Development of Korean Rare Disease Knowledge Base. Hee Won Seo, Ju Han Kim Health Informatics Research 2012 Dec;18(4):272-278 (PMID: 23346478) -  ncrc

2011

 Gene expression profiling during chondrogenesis in human bone marrow derived mesenchymal stem cells using a cDNA microarray. Hyun Jung Yoo, Sung Soo Yoon, Seon Yang Park, Eun Young Lee, Eun Bong Lee, Ju Han Kim, Yeong Wook Song J Korean Med Sci  2011;26(7):851-858 (PMID: 21738335) -*

CDISC Transformer: a metadata-based transformation tool for clinical trial and research data into CDISC standardsYu Rang Park, Hwa Jeong Seo, Hye Hyun Kim, Ju Han Kim* KSII Transactions on Internet and Information Systems 2011;5; 1830-1840-  ncrc, fda

 Comprehensive evaluation of matrix factorization methods for the analysis of DNA microarray gene-expression data. Mi Hyeon Kim*, Hwa Jeong Seo*, Je-Gun Jeong, Ju Han Kim BMC Bioinformatics 2011;12(suppl 13):S8 (PMID: 22373334) - ncrc, cdisc

 Extracting Regulatory Modules from Heterogeneous Gene Expression Data by Sequential Pattern Mining. Mingoo Kim*, Hyunjung Shin*, Tae Su Chung, Je Gun Jeong, Ju Han Kim  BMC Genomics  2011;12(suppl 3):S5-(PMID: 22369275) ncrc

 A novel algorithm for detection of adverse drug reaction signalsusing a hospital electronic medical record database. Man Young Park, Dukyong Yoon, KiYoung Lee, Seok Yun Kang, Inwhee Park, Suk‐Hyang Lee,Woojae Kim, Hye Jin Kam, Young‐Ho Lee, Ju Han Kim, Rae Woong Park  Pharmacoepidemiology and Drug Safety  2011 June;20(6):598-607 (PMID: 21472818) -*

 Semantically enabled and statistically supported biological hypothesis testing with tissue microarray databaseYoung Soo Song, Chan Hee Park, Hee Joon Chung, Jihun Kim, Ju Han Kim* BMC Bioinformatics 2011 Feb 15;12(Suppl 1):S51(PMID: 21342584)- ncrc

 GOChase-II: correcting semantic inconsistencies from Gene Ontology-based annotations for gene products. (PDF) Yu Rang Park, Jihun Kim, Hye Won Lee, Young Jo Yoon, Ju Han Kim* BMC Bioinformatics 2011 Feb 15;12(Suppl 1):S40(PMID: 21342572)cd, ncrc

Histone deacetylase regulates high mobility group A2-targeting microRNAs in human cord blood-derived multipotentstem cell aging. Seunghee Lee, Ji-Won Jung, Sang-Bum Park, Kyounghwan Roh, Su Yeon Lee, Ju Han Kim, Soo-Kyung Kang, Kyung-Sun Kang Cellular and Molecular Life Sciences 2011 Jan;68-2:325-336  DOI 10.1007/s00018-010-0457-9 (SCI) (PMID: 20652617) -*

 Dexamethasone-induced FKBP51 expression in peripheral blood mononuclear cells could play a role in predicting the response of asthmatics to treatment with corticosteroidsEunyoung Chun, Hyun-Seung Lee, Bo-Ram Bang, Tae-Wan Kim, So-Hee Lee, Ju Han Kim, Sang-Heon Cho, Kyung-Up Min, You-Young Kim, Heung-Woo Park Journal of Clinical Immunology 2011 Feb;31(1):122-127 . Epub 2010 Sep 18 (SCI) (PMID: 20853021) -*

A SWOT Analysis of Backup Scenarios in Electronic Medical Record Systems. Hwa Jeong Seo, Hye Hyeon Kim, Ju Han Kim  Health Informatics Research 2011 Sep;17(03):162-171 -  ncrc

 Standard-based Integration of Heterogeneous Large-scale DNA Microarray Data for Improving Reusability.  Yong Jung, Hwa Jeong Seo, Yu Rang Park, Jihun Kim, Sang Jay Bien, Ju Han Kim. Genomics and Informatics 2011 March;9(1):19-27 -  bc, ncrc

2010

 Mixture model based estimation of gene expression variance from public database improves identification of differentially expressed genes in small sized microarray dataMingoo Kim, Sung Bum Cho, Ju Han Kim Bioinformatics 2010 Feb 15;26(4):486-492; doi:10.1093/bioinformatics/btp685 (SCI) (PMID:20015947) -   rad, bc,  (Net)

 TMA-TAB: A spreadsheet-based document for exchange of tissue microarray data based on the Tissue Microarray-Object Model. Young Soo Song, Hye Won Lee, Yu Rang Park, Do Kyoon Kim, Jaehyun Sim, Hyunseok Peter Kang, Ju Han Kim* Journal of Biomedical Informatics 2010;43:435-441. Epub 2009 Oct 14  (SCI) (PMID:19835983) -  mi, pg

 Identifying Regulatory Relationships among Genomic Loci, Biological Pathways, and Disease. Jung Hoon Woo, Sung Bum Cho, Eunjee Lee, Ju Han Kim* Aritificial Intelligence in Medicine 2010 Jul;49(3):161-165 doi:10.1016/j.artmed.2010.03.001  (PMID:20554166) - Net, bc  

● Transforming Growth Factor-ß Induces Epithelial to Mesenchymal Transition And Suppresses the Proliferation and Transdifferentiation of Cultured Human Pancreatic Duct Cells.  Hong OK, Shin JA, Lee HJ, Jeon SY, Kim JW, Lee SH, Cho JH, Lee JM, Choi YH, Chang SA, Son HY, Kim JH, Yoon KH J Cell Biochem 2010  Nov. 10 [Epub ahead of print] (SCI) (PMID: 21069735) -*  

● Gene expression profiling of murin hepatic steatosis induced by Tamoxifen. Min-Ho Lee, Ji-Won Kim, Ju Han Kim, Kyung-Sun Kang, Gu Kong, Mi-Ock Lee Toxicol Lett 2010 Dec 15;199(3):416-24 (SCI) (PMID: 20937368) -* 

● Genomics-based screening of differentially expressed genes in the brains of mice exposed to silver nanoparticles via inhalationHye-Young Lee, You-Jin Choi, Eun-Jung Jung, Hu-Quan Yin, Jung-Taek Kwon, Ji-Eun Kim, Hwang-Tae Im, Myung-Haing Cho, Ju-Han Kim, Hyun-Young Kim, Byung-Hoon Lee Jounal of Nanoparticle Research 2010;12:1567-1578  (2.478)

Gene Expression Profiling of Human Gastrointestinal Stromal Tumors According to Its Malignant Potential. Hur K, Lee HJ, Woo JH, Kim JH, Yang HK Dig Dis Sci 2010 Sep;55(9):2561-7. Epub 2010 Jan 27 (SCI) (PMID:20108043)

 Achieving interoperability for metadata registries using comparative object modeling. Yu Rang Park and Ju Han KimStud Health Technol Inform 2010;160::1136-1139MedInfo 2010 IOS Press (ISBN 978-1-58603-774-1), Capetown, South Africa.  (PMID:20841861) - bc, pg

 Transforming Healthcare through Translational BioinformaticsJu Han Kim* Proceedings of the 7th Teikyo-Harvard Symposium, Tokyo, Japan. 
Transforming healthcare through translational bioinformatics. In Eiji Yano, Ichiro Kawachi, and Mutsuhiro Nakao (eds.). The Healthy Hospital: Maximizing the satisfaction of patients, health workers, and community.p. 123-130, Shinohara-Shinsha: Tokyo, 2010

 Genomic Data Comparison: Which Data is More Informative? Do Kyoon Kim, Young Soo Song, Ju Han Kim*, Hyunjung Helen Shin*  Proceedings of the 2nd International Conference on Internet and 5th Asia Pacific International Conference on Information Science and Technology, 2010:;79-83, Crimson Resort Mactan, Philiphines

 CDISC Transformer: Metadata based CDISC standard compliant exporting and importing toolYu Rang Park, HyeHyeon Kim, Ju Han Kim*  Proceedings of the 2nd International Conference on Internet and 5th Asia Pacific International Conference on Information Science and Technology, 2010:;141-144, Crimson Resort Mactan, Philiphines

 Detection of Adverse Drug Reaction Signals from Electronic Medical Record. Kiwon Kang, Suehyun Lee, Ju Han Kim*  Proceedings of the 2nd International Conference on Internet and 5th Asia Pacific International Conference on Information Science and Technology, 2010:;161-163, Crimson Resort Mactan, Philiphines

 Developing SBO (Specific Behavior Objectives) register DB in College of Medicine. Seok Hoon Kang , Ju Han KimProceedings of the 2nd International Conference on Internet and 5th Asia Pacific International Conference on Information Science and Technology, 2010:;165-167, Crimson Resort Mactan, Philiphines

● Implementation of Consolidated HIS: Improving Quality and Efficiency of HealthcareJinwook Choi, Jin Wook Kim, Jeong-Wook Seo,  Chun Kee Chung, Kyung-Hwan Kim, Ju Han Kim, Jong Hyo Kim, Eui Kyu Chie, Hyun-Jai Cho, Jin Mo Goo, Hyuk-Joon Lee, Won Ryang Wee, Sang Mo Nam, Mi-Sun Lim, Young-Ah Kim, Seung Hoon Yang, Eun Mi Jo, Min-A Hwang, Wan Suk Kim, Eun Hye Lee, Su Hi Choi. Healthcare Informatics Research 2010 Dec;16(4):299-304

2009

 Identifying set-wise differential coexpression in gene expression microarray data. Sung Bum Cho, Jihun Kim, Ju Han Kim* BMC Bioinformatics 2009, 10:109 (16 April 2009)  (SCI) (PMID:19371436)  - Net,  Rad

 Comprehensive analysis of microRNA-mRNA co-expression in circadian rhythm. Young-Ji Na, Jung Hwan Sung, Suk Chan Lee, Young-Ju Lee, Yeun Joo Choi, Woong-Yang Park, Hee Sup Shin, Ju Han Kim  Exp. Mol. Med. 2009 Sep 30;41(9):638-647  (SCI) (PMID: 19478556- Net, bc 

 Analysis of Hepatic Gene Expression during Fatty Liver Change due to Chronic Ethanol Administration in Mice. Hu-Quan Yin, Young-Tae Je, Mingoo Kim, Ju-Han Kim, Gu Kong, Kyung-Sun Kang, Hyung-Lae Kim, Byung-IL Yoon, Mi-Ock Lee and Byung-Hoon Lee Toxicology and Applied Pharmacology 2009 Mar 15;235(3):312-20. Epub 2009 Jan 6. (SCI) (PMID:19167417)-*

 GEFERENCE: Reference Database for Construing Personal Genome Expression Changwon Keum, Ju Han Kim, Young Soo Song and Jung Hoon Woo BIOCOMP2009 (Proceedings of the 2009 International Conferenece of on Bioinformatics and Computational Biology)  2009;:434-440 - bc*

Real-Time Human Tracker Recognizing User's Location and Motion in a Ubiquitous Smart Home. Quoc Cuong Nguyen,Dongil Shin, Dongkyoo Shin, Ju Han Kim MUE2009 (Proceedings of the Third Conferenece of on Multimedica and Ubiquitous Engineering)  2009;: -*

2008

 The JNK-dependent CaMK pathway restrains the reversion of committed cells during osteoclast differentiationEun-Ju Chang, Jeongim Ha, Hao Huang, Hyung Joon Kim, Jung Hoon Woo, Youngkyun Lee, Zang Hee Lee, Ju Han KimHong-Hee Kim. Journal of Cell Science 2008;121(15):2555-2564  -(SCI) (PMID:18650497)

 DACE: Differential Allelic Co-Expression test for estimating regulatory associations of SNP and biological pathway. Jung Hoon Woo, Tian Zheng, Ju Han Kim*. Int. J. of Functional Informatics and Personalized Medicine 2008;1(4):407-418 -mi

 Gene Expression-Based Recurrence Prediction of Hepatitis B Virus-Related Human Hepatocellular Carcinoma. Hyun Goo Woo, Eun Sung Park, Jae Hee Cheon,Ju Han Kim,Ju-Seog Lee,BumJoon Park, Won Kim, Su Cheol Park, YoungJin Chung, Byeong Gwan Kim, Jung-HwanYoon, Hyo-Suk Lee, ChungYong Kim, Nam-JoonYi, Kyung-Suk Suh,Kuhn Uk Lee, In-Sun Chu, Tania Roskams, Snorri S.Thorgeirsson, YoonJun Kim. Clin Cancer Res 2008 Apr 1;14(7):2056-2064 (SCI) (PMID:18381945 ) -*

 Estimating regulatory associations of genomic loci and biological pathways in lymphoblastoid cells. Jung Hoon Woo, Eunjee Lee, Sung Bum Cho, and Ju Han Kim. BIBM 2008 (Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine) 2008 Nov 3;:349-352  (ISBN: 978-0-7695-3452-7)*- Net

 Gene expression profiles of murine fatty liver induced by the administration of methotrexate. Min-Ho Lee; Il Hong; Mingoo Kim; Byung-Hoon Lee; Ju-Han Kim; Kyung-Sun Kang; Hyung-Lae Kim, ; Byung-Il Yoon; Heekyoung Chung; Gu Kong; Mi-Ock Lee. Toxicology 2008 Jul 10;249(1):75-84. Epub 2008 Apr 22 -(SCI) (PMID:18502557) -*

 Cell cycle and immune-related processes are significantly altered in chronic GVHD patients. Suk Joong Oh†, Sung Bum Cho†, Sung-Hyo Park, Cheng Zhe Piao, Soo Mee Kwon, Inho Kim, Sung Soo Yoon, Byoung Kook Kim, Eun Kyung Park, Jong Ho Kang, Song Ju Ywang, WooJin Lee, Chang-Hyuk Yoo, Sangjoon Hwang, Sung Han Kim, Ju Han Kim, Seonyang Park. Bone Marrow Transplant 2008;41: 1047-1057, advance online publication, March 10, 2008; doi:10.1038/bmt.2008.37(SCI) (PMID:18332912) -bc

 BioEMR: an integrative framework for cancer research using multiple genomic technologies. Summit Transl Bioinform. 2008 Mar 1;2008:81-4 (PMID:21347128)

 Time and dose-based gene expression profiles produced by a bile duct-damaging chemical, 4,4'-methylene dianiline, in mouse liver in an acute phase. Sun-Bom Kwon, Joon-Suk Park, Jung-Yeon Yi, Jae-Wong Hwang, Mingoo Kim, Mi-Ock Lee, Byung-Hoon Lee, Hyung-Lae Kim, Ju Han Kim, HeeKyung Chung, Gu Kong, Kyung-Sun Kang, and Byung-Il Yoon Toxicologic Pathology 2008;36(5):660-673(SCI) (PMID: ) -*

 BioLattice: a framework for the biological interpretation of microarray gene expression data using concept lattice analysis. Jihun Kim, Hee-Joon Chung, Yong Jung, Kack-Kyun Kim, Ju Han Kim Journal of Biomedical Informatics 2008 Apr;41(2):232-241:-(SCI) (PMID:18093880) - mi(eCT)

 Comprehensive analysis of time- and dose-dependent patterns of gene expression in a human mesenchymal stem cell line exposed to low-dose ionizing radiation. Young-Woo Jin*, Young-Ji Na*, Young-Ju Lee, Sungkwan An, Jung Eun Lee, Meeseon Jung, Heesun Kim, Seon Young Nam, Cha Soon Kim, Kwang Hee Yang, Seung Up Kim, Woo Kyung Kim, Woong-Yang Park, Keun-Young Yoo, Chong Soon Kim**, and Ju Han Kim**  Oncology Reports 2008;19:135-144 **corresponding authors(SCI) (PMID:18097587)-  09(mi)

 Gene expression profiling in human lung fibroblast following cadmium exposurePurchase the full-text articleReferences and further reading may be available for this article. To view references and further reading you must purchase this article. Guang-Yong Li, Mingoo Kim, Ju-Han Kim, Mi-Ock Lee, Jin-Ho Chung and Byung-Hoon Lee Food Chem Toxicol 2008 Mar;46(3):1131-7. Epub 2007 Nov 22 (SCI) (PMID: 18155341)

 Subchronic effects of valproic acid on gene expression profiles for lipid metabolism in mouse liver. Lee MH, Kim M, Lee BH, Kim JH, Kang KS, Kim HL, Yoon BI, Chung H, Kong G, Lee MO.  Toxicology and Applied Pharmacology 2008 Feb 1;226(3):271-84. Epub 2007 Sep 22. (SCI) (PMID:17963808)

 Biological Pathway Extension Using Microarray Gene Expression Data. Tae Su Chung, Jihun Kim, Keewon Kim, Ju Han Kim* Genomics and Informatics 2008;6(4):202-209 -*

 Differential Expressions of Apoptosis-related Genes in Lung Cancer Cell Lines Determine the Responsiveness to Ionizing Radiation . Su-Yeon Lee, Moon-Kyung Choi, Jung-Min Lim, Hong-Gyun Wu, Ju Han Kim, Woong-Yang Park  Genomics and Informatics 2008;6(1):36-43 -  *

 Prediction of genetic risk for rheumatoid arthritis: Applying differential SNP encoding to improve prediction accuracy. Woo JH, Lee EJ, Kim JH (2008)  Proc. of the 16th Genetic Analysis Workshop (GAW16).

2007

 Difference-based clustering of short time-course microarray data with replicates. Jihoon Kim and Ju Han Kim BMC Bioinformatics 2007;8:253 doi:10.1186/1471-2105-8-253 (SCI) (PMID: 17629922) - mi (pg)

 Genomic Characterization of Perturbation Sensitivity. Jung Hun Ohn, Jihun Kim, Ju Han Kim Bioinformatics 2007;23:i354-i358 (SCI) (PMID: 17646317)mi+eCT 

 Identifying Genomic Regulators of Set-Wise Co-Expression. Jung Hoon Woo, Tian Zheng, Ju Han Kim BIBE2007 (Proc. of theIEEE 7th International Conference on Bioinformatics and BioEngineering) 433-439 - bc

 Protein Expression Profiling and Molecular Classification of Gastric Cancer by the Tissue Array Method. Hye Seung Lee, Sung-Bum Cho, Hee Eun Lee, Min A Kim, Ji Hun Kim, Do Joong Park, Ju Han Kim, Han-Kwang Yang, Byung Lan Lee, Woo Ho Kim. Clin Cancer Res 2007July 15;13(14):4154-4163

 The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes. Nam-Hyuk Cho, Hang-Rae Kim, Jung-Hee Lee, Se-Yoon Kim, Jaejong Kim, Sunho Cha, Sang-Yoon Kim, Alistair C. Darby, Hans-Henrik Fuxelius, Jun Yin, Ju Han Kim, Jihun Kim, Sang Joo Lee, Young-Sang Koh,Won-Jong Jang, Kyung-Hee Park, Siv G. E. Andersson, Myung-Sik Choi, Ik-Sang Kim. PNAS 104(19):7981-7986 (PMID: 17483455)

 Cancer Genomics Object Model: an object model for multiple functional genomics data for cancer research. Yu Rang Park, Hye Won Lee, Sung Bum Cho, Ju Han Kim* Stud Health Technol Inform 2007;129(Pt 2): 1235-9, MEDINFO 2007 Proceedings of the 12th World Congress on Health (Medical) Informatics – Building Sustainable Health Systems, Edited by Klaus A. Kuhn, James R. Warren, Tze-Yun Leong, IOS Press (ISBN 978-1-58603-774-1), Brisbane, Austria. (PMID: 17911912) -mi

 Protein classification from protein-domain and gene-ontology annotation information using formal concept analysis. Mi-Ryung Han, Hee-Joon Chung, Jihun Kim, Dong-Young Noh* and Ju Han Kim* LNCS 4488, 2007;4488:347-354 (SCIE) -eCT + mi + 04

 Exploring the combinatorics of protein complexes. Jung Hun Ohn, Jihun Kim, Ju Han Kim* 23-29 BIRD’07, Austrian Computer Society, Berlin, Germany- tma, (mi)

 Differential gene expression and lipid metabolism in fatty liver induced by acute ethanol treatment in mice.  Yin, H.Q., Kim, M., Kim, J.H., Kong, G., Kang, K.S., Yoon, B.I., Kim, H.L., Lee, M.O., Lee, B.H Toxicology and Applied Pharmacology 2007;223:225-233.

 Gene expression profiles of murine fatty liver induced by the administration of valproic acid. Min-Ho Lee, Il Hong, Mingoo Kim, Byung Hoon Lee, Ju-Han Kim, Kyung-Sun Kang, Hyung-Lae Kim, Byung-Il Yoon, Heekyoung Chung, Gu Kong and Mi-Ock Lee  Toxicology and Applied Pharmacology 2007 Apr 1;220(1):45-59 (SCI) (PMID:17292431)

 PhactaManager: a clinical trial management system incorating an XML Layer as a database-independent processing platform. Okgu Kim, Yu Rang Park, Young Shin Kim, Seon Ha Kim, Hwa Jung Kim, Ju Han Kim*, Byung Joo Park* J Kor Soc Med Informatics 2007;13(2):99-113 *corresponding authors - mi

 PathTalk: Interpretation of Microarray Gene-expression Clusters in Association with Biological Pathways . Tae Su Chung, Hee-Joon Chung, Ju Han Kim Genomics and Informatics 2007;5(3):125-128 - mi (pg)

 Genome-wide association test for genes sets: Testing differentialallelic co-expression. Woo JH, Lee EJ, Cho SB, Kim JH Proc. of 15th Genetic Analysis Workshop (GAW15)  2007;:

2006

 The Tissue Microarray Object Model: a data model for storage, analysis and exchange of tissue microarray experimental data . Hye Won Lee, Yu Rang Park, Jaehyun Shim, Rae Woong Park, Woo Ho Kim, Ju Han Kim. Arch Pathol Lab Med 2006 Jul;130:1004-1013 (SCI) (PMID: 16831026) - tma  (bc)

 A large-scale sequence oriented comparison of gene expression measurements across different hybridization-based technologies. Kuo WP, Liu F, Jenssen T, Trimarchi J, Punzo C, Lombardi M, Sarang J, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner T, Kim JH,  Short GF, Freeman MW, Seed B, Jensen R, Church GM, Hovig E, Cepko CL, Ohno-Machado L. Nature Biotechnology 2006 Jul;24(7):832-40. (SCI) (PMID:16823376 ) - *

 Selection of neuronal differentiation-specific genes by subtracting profiles of random differentiation. Min Su Lee, Dae-Hyun Jun, Chang-Il Hwang, Seung Soo Park, Hyun-Seok Park, Ju Han Kim, Jeong-Sun Seo, Woong-Yang Park. Stem Cells 2006;24:1946-1955 (SCI) (PMID: ) - bc

 Evolution of an Intronic Microsatellite Polymorphism in Toll-Like Receptor 2 among Primates. Yim JJ, Adams AA, Kim JH, Holland SM. Immunogenetics 2006;58:740-745 -*

 Comprehensive analysis of differential gene expression profiles on diclofenac-induced acute mouse liver injury and recoveryHeekyoung Chung, Hyun-Jun Kim, Ki-Seok Jang, Mingoo Kim, Jungeun Yang, Kyung-Sun  Kang, Hyung-Lae  Kim, Byung-Il  Yoon, Mi-Ock  Lee, Byung-Hoon  Lee, Ju Han Kim, Yong-Sung Lee, Gu Kong. Toxicology Letter 2006;166(1):77-87. (SCI) (PMID: ) - *

 Comprehensive analysis of differential gene expression profiles on D-galactosamine-induced acute mouse liver injury and regeneration. Heekyoung Chung, Hyun-Jun Kim, Ki-Seok Jang, Mingoo Kim, Jungeun Yang, Kyung-Sun Kang, Hyung-Lae Kim, Byung-Il Yoon, Mi-Ock Lee, Byung-Hoon Lee, Ju Han Kim, Yong-Sung Lee, Gu Kong. Toxicology 2006;277:136?144. (SCI) (PMID:16962228 ) - *

 Hepatic Gene Expression Profiling and Lipid Homeostasis in Mice Exposed to Steatogenic Drug, Tetracycline. Hu-Quan Yin, Mingoo Kim , Ju-Han Kim, Gu Kong, Mi-Ock Lee, Byung-Hoon Lee. Toxicological Science 2006 Nov;94(1):206-216.

 Gene expression analysis of phenylbutazone-induced liver damage in mice. Eun-Ju Lee, In-Hye Jeong, Han-Na Kim, Heekyoung Chung, Gu Kong, Kyung-Sun Kang, Byung-Il Yoon, Byeong-Hoon Lee, Mi-Ock Lee, Ju Han Kim, Hyung-Lae Kim. J Toxicol Pub Health 2006;22(2);87-93.

 The signature from messenger RNA expression profiling can predict lymph node metastasis with high accuracy for non-small cell lung cancer. Naeyun Choi, Dae-Soon Son,  Jinseon Lee, In-Seung Song, Kyung-Ah Kim, Sang-Ho Park, Yoo-Sung Lim, Gil-Ju Seo, Jungho Han, Hyejin Kim, Hye Won Lee, Jason Jong-ho Kang, Jeong-Sun Seo, Ju Han Kim*, Jhingook Kim*. Journal of Thoracic Oncology 2006 Sep;1(7):622-628. *corresponding authors (PMID:17409928)

 A Novel Framework for Discovering Robust Cluster Results. Hye-Sung Yoon, Sang-Ho Lee, Sung-Bum Cho, Ju Han Kim. LNAI 4265, 2006;4265:373-377. (SCIE)-*

 On the society of genome: social affiliation network analysis of microarray data. Jung Hun Ohn, Jihoon Kim, Ju Han Kim. LNAI 4233 2006;4233:1062-1071 (SCIE) -eCT

 Heterogeneous clustering ensemble method for combining differenet cluster resultsHye-Sung Yoon, Sun-Young Ahn, Sang-Ho Lee, Sung-Bum Cho and Ju Han Kim. LNBI 3916, 2006;3916:82-92 (SCIE) -*

 Integration Analysis of Diverse Genomic Data Using Multi-clustering Results. Hye Sung Yoon, Sang Ho Lee,  Sung Bum Cho, Ju Han Kim. LNBI 4345, 2006;4345:37-48 (SCIE) -*

 Defining Structural Constraints for the Development of Structured Operation Note for Breast Cancer based on Clinical Document Architecture Hwa Jeong Seo, Sung Tae Youn, Ki-Tae Hwang, Ju Han Kim  AMIA Annu Symp Proc. 2006; 2006: 1089.  (PMID:17238708)

 Metadata Registry and Management System based on ISO 11179 for Cancer Clinical Trials Information System.  Yu Rang Park and Ju Han KimAMIA Annu Symp Proc. 2006; 2006: 1056 (PMID:1839675) -

 Currents in Internet Addicition. Ju Han Kim. JKMA 2006;49(3):202-208. (SCIE)-*

 Xperanto-Tox: an integrated toxicogenomics knowledgebase Jung Hoon Woo, Hyeouneui Kim, Gu Kong, Ju Han Kim. Genomics and Informatics 2006 March;4(1):40-44. - tgrc, mi

 GraPT: Genomic interpreteR About Predictive Toxicology. Jung Hoon Woo, Yu Rang Park, Yong Jung, Jihun Kim, Ju Han Kim. Genomics and Informatics 2006 September;4(3);129-132. - tgrc, mi

 마이크로어레이 정보를 이용한 생물학적 패스웨이 확장 모델. 정태수, 김주한 대한의료정보학회지. 2006;12(Suppl 1):s13-s16 -mi

 GEORetrieval: Gene Expression Omnibus 메타데이터를 이용한 유전자 마이크로어레이 실험 검색 시스템. 정용, 박유랑, 김주한. 대한의료정보학회지. 2006;12(Suppl 2):61s-s64- bc

 저선량 방사선에 노출된 유전자 발현 프로파일에서 선량 반응성 탐색. 나영지, 진영우, 이영주, 김주한. 대한의료정보학회지. 2006;12(Suppl 2):s65-s68 - tma

 이종 데이터 통합을 통한 복합형질 분석. 우정훈, 이은지, 김주한. 대한의료정보학회지. 2006;12(Suppl 2):s17-s20 - mi

 주성분 분석을 이용한 유전자 집합 기반의 마이크로어레이 자료 분석. 조성범, 정태수, 김주한. 대 한의료정보학회지. 2006;12(Suppl 2):s57-s60 - pg

2005

[석사학위논문, 온정헌] 소속연결망 탐색을 통한 생물학적으로 의미있는 구조의 발견    Exploration of Affliation Networks for Biologically Relevant Structures

 ArrayXPath II: mapping and visualizing microarray gene expression data with biomedical ontologies and integrated pathway resources using Scalable Vector GraphicsHee-Joon Chung, Chan Hee Park, Mi Ryung Han, Seoko Lee, Jung Hun Ohn, Jihoon Kim, Jihoon Kim,  Ju Han Kim. Nucleic Acids Research 2005 Jul 1;33:W621-W626 (SCI) (PMID:15980549) - mi

 GOChase: correcting errors from Gene Ontology-based annotations for gene products. Yu Rang Park, Chan Hee Park, Ju Han Kim. Bioinformatics 2005;21(6):829-831. (SCI) (PMID: 15513987)  - bc

 Design issues in toxicogenomics using DNA microarray experiment Ju Han Kim, Kyung Moo Lee, Daehee Kang. Toxicology and Applied Pharmacology 2005;207(2 Suppl):200-208 (SCI) (PMID: 16005921) - pg +*

 Application of Emerging Patterns for Multi-source Data Analysis. Hye-Sung Yoon, Sang-Ho Lee, Ju Han Kim. LNCS 3610, Advances in Natural Computation  2005;965-974. (SCIE) -*

 Transforming healthcare through biomedical informatics and applied genomicsJu Han Kim  (in Japanese) The Journal of the Japan Medical Association 2005;133(1):52-58    with the following panel discussion. -*

 Xperanto: a web-based integrated system for DNA microarray data management and analysis. Ji Yeon Park, Yu Rang Park, Chan Hee Park, Ji Hoon Kim, Ju Han Kim. Genomics and Informatics 2005 March;3(1):39-42. - bc

 Supervised model for identifying differentially expressed genes in a DNA microarray gene expression dataset using biological pathway information. Tae Su Chung, Keewon Kim, Ju Han Kim. Genomics and Informatics 2005 March;3(1):24-29. - mi

 Integrating microarray gene expression object model and clinical document architecture for cancer genomics research. Park YR, Lee HW, Kim JH. AMIA Annu Symp Proc. 2005:1073. (PMID: 16779360)

 Detection of micoplasma infection in cultured cells on the basis of  molecular profiling of host cells. Tae Su Chung, Young-Ju Lee, Ju Han Kim, Woong-Yang Park. Genomics and Informatics 2005 Sept.;3(3):63-67. - kfda

 Development of a Web-based Knowledgebase for the Korean Pharmacogenomics Research Network. Chan Hee Park, Yu Rang Park, Hye Won Lee, Yong  Chung, Ju Han Kim, Woong-Yang Park. Genomics and Informatics 2005 Sept.;3(3):68-73. - pg

 임 상문서구조 표준을 따르는 퇴원요약정보의 구조적 제약사항 표현. 서 화정, 홍승권, 박지연, 이정애, 박유랑, 김주한. 대한의료정보학회지. 2005;11(2):27-35 - mi

 베 이지안망 분류기를 이용한 조직 마이크로어레이의 분석.  조성범, 박유랑, 이혜원, 김우호, 김주한. 대한의료정보학회지. 2005;11(Suppl 1):s77-s80 - bc

 PhactaX - 의학연구 및 임상시험 수행을 위한 자료관리시스템 및 관련 웹사이트 패키지. 김 옥구, 김선하, 김영신, 안희정, 고영, 임형주, 장인진, 김주한, 박병주. 대한의료정보학회지. 2005;11(Suppl 1):s1-s8  -*

 ISO/IEC 11179 Entity-Attribute-Value 모델 기반의 임상자료 저장소의 구현. 박유랑, 권혜진, 김세영, 이혜원, 조성범, 김주한. 대한의료정보학회 지. 2005;11(Suppl 1):s5-s8  -mi

 조 직 마이크로어레이 데이터의 체계적인 관리를 위한 데이터베이스 개발. 이 혜원, 박유랑, 심재현, 조성범, 김우호, 김주한. 대한의료정보학회지. 2005;11(Suppl 1):s9-s12  - tma

 BioGPS: 상호참조 시각화를 통한 생물학 데이터베이스들간 연관 자료 검색 시스템. 김민구, 김주한 . 대한의료정보학회지. 2005;11(Suppl 1):s17-s19 -pg

 약 물유전체 데이터 저장을 위한 KPRN repository 시스템 개발. 박 찬희, 이수연, 박유랑, 이혜원, 김주한. 대한의료정보학회지. 2005;11(Suppl 1):s13-s16 -pg

 CDA 문서 제약사항을 이용한 유방암센터 수술기록지의 구조적 표현 방법. 서화정, 윤성태, 황기태, 김주한. 대한의료정보학회지. 2005;11(Suppl 2):s140-s145 ?mi

 전 자의무기록 도입 시 의사 만족도에 영향을 미치는 요인. 홍승권, 임미선, 이해석, 김경환, 최진욱, 김주한, 이은영, 민열하, 서화정, 박성규, 서정욱. 대한의료정보학회지. 2005;11(Suppl 2):s-s -*

 독 성유전체 지식베이스 구축. 우정훈, 김민구, 박유랑, 이혜원, 김주한. 대한의료정보학회지. 2005;11(Suppl 2):s162-s166 ?tma

 암 유전체 연구를 위한 DNA microarray, Array CGH, Tissue Microarray의 통합 데이터 모델 개발. 이혜원, 박유랑, 우정훈, 김주한. 대한의료정보학회지. 2005;11(Suppl 2):s-s ? tma

2004

 Discovering significant and interpretable patterns from multifactorial DNA microarray experiments with poor replication. Kim JH, Jeoung D, Lee S, Kim H. Journal of Biomedical Informatics 2004;37(4):260-268 (SCI) (PMID:15465479 ) -0009

 ArrayXPath: mapping and visualizing microarray gene expression data with integrated pathway resources using Scalable Vector GraphicsHee-Joon Chung, Mingoo Kim, Chan Hee Park, Ju Han Kim. Nucleic Acids Research,  2004 Jul 1;32:W460-W464 (SCI) (PMID:15215430) -pg

 Gene expression profiling of anti-GBM glomerulonephritis model: the role of NFkB in immune complex-mediated kidney disease. Kim JH, Ha IS, Hwang CI, Lee YJ, Kim Y, Lee DS, Kim JH, Yang SH, Cao A, Choi S, Park WY. Kidney International, 2004;66(5):1826-1837 (SCI) (PMID:15496153)-imt

 Two-stage Normalization Using Background Intensities in cDNA Microarray Data. Dankyu Yoon, Sung-Gon Yi, Ju Han Kim, Taesung Park. BMC Bioinformatics 2004;5:97 (SCIE) (PMID: ) -*

 Increased expression of metallothionein is associated with irinotecan resistance in gastric cancer. Cancer Research 2004;64(14):4703-4706 (SCI) (PMID:15256434 ) -*

 ChromoViz: Multimodal Visualization of Gene Expression Profile onto Chromosome Using Scalable Vector Graphics. Jihoon Kim, Hee-Joon Chung, Chan Hee Park, Ju Han Kim. Bioinformatics, 2004;20:1191-1192 (SCI) (PMID:14764551) -0009

 DNA microarray analysis of the correlation between gene expression patterns and acquired resistance to 5-FU/cisplatin in gastric cancer. Hark Kyun Kim, Il Ju Choi, Hee Sung Kim, Ju Han Kim, Eugene Kim, In Sook Park, Jong Ho Chun, In-Hoo Kim, Il-Jin Kim, Hio Chung Kang, Jae-Hyun Park, Jae-Moon Bae, Jin Soo Lee and Jae-Gahb Park. Biochem Bioph Res Co, 2004 April 9;316(3):781-789 (SCI) (PMID: 15033468) -*

 Bioinformatics Applications in Genomic Medicine. Ju Han Kim. Circulation Journal 2004; 68(Suppl. 1): 36 (SCI)

 조 직 마이크로어레이 실험과 분석을 위한 객체모델. 이 혜원, 박유랑, 정태수, 서화정, 김주한. 대한의료정보학회지. 2004;10(Suppl 2):s37-s40 -0009 

 XML Grammar Development for System Independent and Reusable Electronic Case Report Form Presentation. Okgu Kim, Young Shin Kim, Seon Ha Kim, Hwa Jung Kim, Nam-Kyong Choi, Jung-Lim Jung, Ju Han Kim, Byung Joo Park. 대한의료정보학회지. 2004;10(Suppl 2):s57-s60 -*

 주 성분 분석 방법을 이용한 유방암의 임상적 특징과 관련된 유전자 분석. Mi-Ryung Han, Seokho Lee, Wonshik Han, Mihyeon Kim, Ju Han Kim, Dong-Young Noh. Proceedings of the 3nd Annual Conference of the Korean Society of Bioinformatics 2004 Nov;3:29-35-*

 Determining differentially expressed genes in a microarray expression dataset based on the global connectivity structure of pathway information. Tae Su Chung, Keewon Kim, Hye Won Lee, Ju Han Kim. Proceedings of the 2nd Annual Conference of the Korean Society of Bioinformatics 2004 Nov;3:124-130 -bc

 MicroArray Gene Expression Markup Language 바이오 데이터 표준을 구현한 유전체 발현정보 데이터베이스 구축. 박지연, 김세영, 박유랑, 서화정, 김주한 대한의료정보학회지. 2004;10(3):347-353 -0009 

 Unified Medical Language System 개념 색인화를 통한 진단방사선과 보고서의 자동색인 정확률 분석 [A Study of Effective Unified Medical Language System Concept Indexing in Radiology Reports]. 이정애, 서화정, 김기원, 김민구, 홍승권, 박유랑, 김주한 대한의료정보학회지. 2004;10(3):295-302 -0009 

 비 분류표시 데이터를 이용하는 분류 기반 Co-training 방 법 (A Co-training Method based on Classification Using Unlabeled Data) 윤혜성, 이상호, 박승수, 용환승, 김주한. 정보과학회논문지 (Journal of KISS: Software and Applications. 2004 Aug.;31(8):991-998 (issn 1229-6848)-*

 유 전체 발현의 정보학적 분석과 응용. 종설. 김주한 대한피부연구학회지

 일 학술지의 온라인 평가 및 출간 체계. 김 주한, 차경렬, 오병훈. 대한신경정신의학회지

 암 연구 Common Data Element에 기반한 Microarray Gene Expression Object ModelClinical Document Architecture의 연동. 박 유랑, 박지연, 김세영, 서화정, 이정애, 김주한. 대한의료정보학회지. 2004;10(Suppl 1):s41-s45. -0009

 임 상문서구조 표준을 따르는 구조화된 퇴원요약지의 문서 제약사항 표현. 서화정, 홍승권, 이정애, 박유랑, 김주한. 대한의료정보학회지. 2004;10(Suppl 1):s55-s59. -0009 

 방 사선과 보고서의 효율적인 UMLS concept indexing을 위한 연구. 이정애, 서화정, 김기원, 김민구, 홍승권, 박유랑, 김 주한. 대한의료정보학회지. 2004;10(Suppl 1):s65-s69. -0000

 전 유전체 서열을 기반으로 한 인간 DNA 데이터 압축. 김형도, 김주한. 대한의료정보학회지. 2004;10(Suppl 1):s142-s145.-*

2003

 Estrogen receptor alpha gene polymorphisms and breast cancer. Aesun Shin, Daehee Kang, Hisahido Nishio, Myeong Jin Lee, Sue Kyung Park, Sook-Un Kim, Dong-Young Noh, Kuk-Jin Choe, Se-Hyun Ahn, Ari Hirvonen, Ju Han Kim, and Keun-Young Yoo. Breast Cancer Res Tr 2003; 80(1): 127-131. (SCI) (PMID: 11867202)

 Social network analysis of gene expression data. Ohn JH, Kim J, Kim JH. AMIA Annu Symp Proc. 2003:958. (PMID: 14728462)

 Poor correlation between the new statistical and the old empirical algorithms for DNA microarray analysis. Kim JH, Kuo WP, Kong SW, Ohno-Machado L, Kohane IS. Genomics and Informatics -0009

 Rank-based Nonlinear Normalization of Oligonucleotide Arrays. Park PJ, Kim JH, Kohane IS. Genomics and Informatics -0009

 Global Optimization of Clusters in Gene Expression Data of DNA Microarrays by Deterministic Annealing. Lee K, Chung TS and Kim JH. Genomics and Informatics 2003 March;1(1):20-25. -0004

 UML을 활용한 마이크로어레이 정보시스템의 객체지향 분석. 박지연, 정희준, 김주한. Proceedings of the 2nd Annual Conference of the Korean Society of Bioinformatics 2003 Oct;:147-153 -0000

 흰쥐 전두엽에서 올란자핀 만성 투여 후 cDNA microarray 이용한 유전자 발현 변화 검색. 윤세창, 강웅구, 서명숙, 전양숙, 김주한, 이영한, 안용민, 김용식. 대한정신약물학회지. 2003;14(4):360-366.

 유 전체 발현정보 표현 표준객체모델인 MAGE-OM (Microarray Gene Expression-Object Model)을 구현한 데이터베이스 구축. 박지연, 박유랑, 박석, 김주한, 대한의료정보학회지. 2003;9(3):227-233. -0009

 대 한의료정보학회 웹 기반 논문투고관리시스템 구축. 서 화정, 김주한, 대한의료정보학회지. 2003;9(3):297-303. -0009

 약물이상반응의 인과성 평가를 위한 한국형 알고리즘 개발. 홍경섭, 박병주, 신상구, 양재석, 이승미 김윤이, 서화정, 김주한, 임상약리학회지. 2003;10(2):129-142.

 디 지털 의료의 미래와 전망. 김주 한, 계간의료정책포럼. 2003;1(3):96-102.

 유 전체의학과 정보의학. 김주한, 대한의료정보학회지 2003;9(2):79-91. -0000

 유전자칩 표준 자료모델인 Microarray Gene Expression-Object Model을 지원하는 데이터베이스 설계 및 구현. 박지연, 박병주, 김주한. 대한의료정보학회지. 2003;9(Suppl 1):s50-s53. -0004

 종 이기반 임상시험의 문제와 개선을 위한 정보기술. 김 옥구, 김선하, 김주한, 배균섭, 김화정, 박병주. 임상약리학회지 2003:11(2);71-79.

2002    

 Bioinformatics and Genomic Medicine. Kim JH. Genet Med 2002;4(6 Suppl):62S-65S (SCI) (PMID) -0004

 Identification of radiation-specific responses from gene expression profile. Park WY, Hwang CI, Im CN, Kang MJ, Woo JH, Kim JH, Kim YS, Kim JH, Kim H, Kim KA, Yu HJ, Lee SJ, Lee YS, Seo JS. Oncogene 2002 Dec 5;21(55):8521-8528.(SCI) (PMID: 12466973)

 Visualization and Evaluation of Clustering Structures for Gene Expression Data Analysis. Kim JH, Ohno-Machado L, Kohane IS. (2002) J Biomed Inform 2002;35(1):25-36 (SCI) (PMID: 12415724) -0004

 XRCC1 genetic polymorphism and breast cancer risk. Kim SU, Park SK, Yoo KY, Yoon KS, Noh DY, Ahn SH, Kim JH, Choe KJ, Strickland PT, Hirvonen A, Kang D. (2002)  Pharmacogenetics 2002 Jun;12(4):335-338 (SCI) (PMID: 12042672)

 Functional Catechol-O-Methyltransferase Gene Polymorphism and Susceptibility to Schizophrenia. Park TW, Yoon KS, Kim JH, Park WY, Hirvonen A, Kang D. (2002)  Eur Neuropsychopharm 2002 Aug;12(4):299-303. (SCI) (PMID: 12126868)

 An Analysis of Matched mRNA Measurements from the High-Density HU6800 and cDNA Microarrays. Kuo WP, Jenssen TK, Kim JH, Kohane IS, Ohno-Machado L (2002) : Currents in Computational Molecular Biology, RECOMB 2002;:109-110

 Development of the Korean version of the Consortium to Establish a Registry for Alzheimers Disease (CERAD) Assessment packet (CERAD-K): Clinical and Neuropsychological Assessment Batteries. Lee JH, Lee KU, Lee DY, Kim KW, Jhoo JH, Kim JH, Lee KH, Kim SY, Han SH, Woo JI. (2002) : J Gerontol B Psychol Sci Soc Sci 2002;57:47-53 (SCI) (PMID: 10850748)

 미 국 일시거주 한인 아동 및 청소년의 사회문화적 적응 촉진을 위한 인터넷 상담교육 프로그램의 효과검증. 박영숙, 박광배,최상진, Antony Marsella, 김주한. 한국심리학회지. 2002;21(2):97-139

 생 명정보학과 유전체의학 (종설). 김주한 (2002.5) 예방의학회지. 2002;35(2):83-91 -0000

 MAGE (Microarray Gene Expression) 데이터 통합 획득 시스템의 설계. 김형도, 김주한. 대한의료정보학회지 2002;8(Suppl 1):s112-s115 -0004 

 반구조화된 바이오데이터 분석을 위한 반교사학습. 윤혜성, 이상호, 김주한. 대한의료정보학회지 2002;8(Suppl 1):s116-s119 -0000

 음 성인식기반의 전자의무기록 구현을 위한 오인식 의학용어 수정 시스템 개발. 서화정, 김주한. 대한의료정보학회지. 2002;8(4):11-20 -0000

 상 호작용성 사람-컴퓨터 대화 기술을 이용한 웹기반 청소년 성교육 프로그램 개발연구. 김주한, 이건, 김희란, 이명화, 김현의, 이근후, 박영숙. 대한의료정보학회지. 2002;8(3):27-35 -0000

2001

 Expression Profiling of the Cardiovascular System by th Microarray Technology. CH Yi, M Schinke, JH Kim, P Jay, T Shioi, M Whipple, A Butte, L Riggi, DIB Chen, IS Kohane, S Izumo. 2001 American Society Human Genetics, Am J Hum Genet 2001;69(4) supple:453 Abstract 1589

 A rapid prototyping and clinical conversational system that complements electronic patient record system. Kim JH, Reuven F, Kowalof HB, Sands DZ, Safran C, Slack WV. (2001) : Medinfo. 2001;10(Pt 1):628-32. Proceedings of the Tenth World Congress on Medical Informatics, MedInfo 2001, Sept. 2001, London, England (PMID: 11604813)

 Evolutionary strategy applied to global optimization of clusters in gene expression data of DNA microarrays. Lee K, Kim JH, Chung TS, Moon BS, Lee HS, Kohane IS. (2001) : IEEE Proceedings of the 2001 Congress on Evolutionary Computation 845-850, Seoul, Korea, May 2001.

 Unsupervised Learning from Complex Data: The Matrix Incision Tree Algorithm. Kim JH, Ohno-Machado L, Kohane IS. (2001) : Pac Symp Biocomput 2001;30-41 (PMID: 11262950)

 의과대학에서의 의료정보학교육. 김주한 (2001) : 대한의료정보학회 추계학술대회초록집, 2001;2:138-147. 대한의료정보학회 추계학술대회. 전남대학교 국제회의동, 광 주, Nov. 23-24 2001.

2000

 A Telemedicine System as a Care Modality for Dementia Patients in Korea. Lee JH, Kim JH, Jhoo JH, Lee KU, Kim KW, Lee DY, Woo JI (2000) Alzheimer Dis and Assoc Disord 2000;14(2):94-101 (SCI) (PMID: 10850748)

 XML/XSL 기술을 이용한 범용 데이터 편집기 개발 연구. 김 주한 (2000) 대 한의료정보학회지 2000;6(2):65-72

1999

 의료 정보의 보안과 사적비밀 보장에 대한 사회 군간 인식도 비교 연구. 김 현의, 김주한 (1999) : 대한의료정보 학회지 5(3):63-76

1998

 Human Cloining and the Digital Revolution. Kim JH (1998) : MD Comput 15(4):215-216 (SCI) (PMID: 9673084)

 Migrating towards a Client Server Architecture : A Success Story of a 2,200-bed General Hospital. Lee JS, Min WK, Kim JH (1998) : Proceedings of the Ninth World Congress on Medical Informatics, Medinfo'98 1:927-930 (PMID: 10384594)

 응급의료정보 체계를 위한 전자 의료 카드의 활용방안. 박흥식, 남승곤, 안재억, 김현의, 김 주한, 정철규, 김태진, 이기한 (1998) : 98 대 한대한의료정보학회지 4(2):145-156

 전자 의료 카드를 위한 보건의료정보 표준화 연구. 박흥식, 남승곤, 안재억, 김현의, 김 주한, 정철규, 김태진, 이기한 (1998) : 98 대 한의료정보학회지 4(2):157-164

1997

 Age of onset and Brain Atrophy in Alzheimer's disease. Woo JI, Kim JH, Lee JH (1997) : International Psychogeriatrics 9(2):183-196 (SCI-Expanded) (PMID: 9309490)

 월 드와이드웹과 포터블 문서양식을 이용한 의학 학술지의 온라인 출판. 김주한, 우종인, 김창윤, 이정희, 김창남, 한오수 (1997) : 정신병리학 6(1):148-158

 주 의력 결핍 과잉행동장애 소년의 자기공명 영상을 이용한 뇌량 및 측뇌실의 계량적 특성 분석. 이정섭, 김주한, 홍강의 (1997) : 신경정신의학 36(2):274-280

 National Identification and Health Card Project in Korea. Kim JH, Tak SH, Lee KH, Kim MK (1997). Proceedings of Health Cards 97, Amsterdam, Netherland, Nov 1997

 서 울중앙병원의 병원 정보 시스템 구축 전략과 발전 방안. 김주한, 이정신 (1997) : 97 대한의료정보학술대회 초록집 112-113, 1997.11, 서울

 보 건의료정보 카드와 전자주민카드의 결합. 이기한, 김주한, 박흥식 (1997) : 97 대한의료정보학술대회 초록집 101-104, 1997.11, 서울

1996

 치 매 환자의 원격 영상 진료 시스템의 개발. 우종인, 김주한, 이정희 (1996) : 대한의료정보학회지 2(2):44-54

 알 쯔하이머형 치매 환자의 腦磁氣共鳴影像에 나타난 腦萎縮과 腦白質病變에 대한 연구. 우종인, 김주한 (1996) : 생물정신의학 3(2):203-210

 임 파구에서 알쯔하이머 아밀로이드 전구단백질의 발현에 관한 연구. 김종석, 우종인, 서유헌, 김주한, 이부영 (1996) : 생물정신의학 3(2):170-180

 腦 影像術을 通한 腦의 形態學的 分析 方法論 硏究. 김주한, 이정희, 우종인 (1995) : 신경정신의학 34(4):1204-1251

 

Extended Abstracts in Proceedings

 Jeong Hun Ohn, Jihoon Kim, Ju Han Kim. (2003) Social Network Analysis of Gene Expression Data. Proceedings of Annual Symposium of American Medical Informatics Association, Nov 2003, Washington, DC

 Seo HJ, Kim JH, Sakabe N (2002) A Mis-recognized Medical Vocabulary Correction System for Speech-based Electronic Medical Record. Proceedings of Annual Symposium of American Medical Informatics Association, Nov 2002, Tucson, AZ.

 Lin CK, Kim JH, Russell PM, Rind DM (2000) : PatientCareWeb: Connecting patients to Their medication records. Proceedings of Annual Symposium of American Medical Informatics Association, Nov 2000.

 Kim JH, Safran C, Slack WV. (2000) : A Generic Data Form Designer Based on XML/XSL Technology. Proceedings of Annual Symposium of American Medical Informatics Association, Nov 2000.

 Lin CK, Kim JH, Russell PM, Rind DM (2000) : Online prescription renewals: a Web-based solution to streamlining hospital workflow and improving patient services. Proceedings of Annual Symposium of American Medical Informatics Association, Nov 2000.

 Rind D, Kim JH, Sturges EA, Morales AA, Russell PM (1999) : Seniormed: Connecting patients to their medical record. Proceedings of Annual Symposium of American Medical Informatics Association, Nov 1999.

 Kim JH, Ferziger R, Sands DZ (1999) : Development of a web-based interview program. Proceedings of Annual Symposium of Americal Medical Informatics Association, Nov 1999.

 안 재억, 김주한 (1997) : Health Card Seminar. 1997 대한의료정보학회 추계학술대회초록집 93-94, 1997.11, 힐튼호텔, 서울

 김 주한, 박흥식 (1997) : 보건의료정보화의 현주소 및 연구개발의 최신 동향. 1997 대한의료정보학회 추계학술대회초록집 pp72, 1997.11, 힐튼호텔, 서울

 김 주한, 우종인, 김창윤, 이정희, 한오수 (1997) : 월드와이드웹과 포터블 문서양식을 이용한 의학 학술지의 온라인 출판. 대한의료정보학회 춘계학술대회초록집, 대덕롯데호텔, 대전, 충남, 1997. 6

 

Thesis

Master (M.S) (1995.2) : Topographic analysis of the cerebrospinal spaces in Alzhiemer's disease : MR-based radial iso-volume unit analysis. (accepted as the thesis for the degree of master of philosophy of medicine (psychiatry), Seoul National University, College of Medicine)

Doctor (Ph.D.) (1998.2) : 癡매 患者의 腦磁氣共鳴影像에서 等積放射狀分割法을 이용한 形態學的 特性 分析 硏究 (서울대학교 대학원 의학과 의학박사학위 논문)

Master (M.S.) (2001.1) : Exploration of Complex Data Structures by Unsupervised Learning. (accepted as the thesis for the degree of Master of Science in Medical Informatics) Harvard/MIT Division of Health Sciences and Technology, Massachusettes Institute of Technology, Cambridge, MA

Monographs, Translations, and Reviews

(공 저) 대한의료정보학회 (1999.9) : <<보건의료정보학>>,13. 전자의무기록, 김주한, , 현문사, 서울 (ISBN : 8980591543)

(공 저) 김주한 (2001.3) 「싸이버중독과 인터넷심리」, <<2001 싸이버스페이스 오디쎄이>> 홍성욱 백욱인 엮음, 창작과비평사, 서울 (ISBN : 8936485091)

(공 역) 신영수, 김주한, 이기한, 이병국, 이행, 최성우 (1997.11) : 임상의료정보학 입문 (Introduction to Clinical Informatics, Patrice Degoulet and Marius Fieshi, 1997, Springer, New York, NY), 고려의학사, 서울 (ISBN : 8970431519)

(공 역) 김주한, 김현의 (2000.3) : 사이버 닥터: 컴퓨터 문화와 미래의료 (Cybermedicine, Warner V. Slack, 1997, Jossey-Bass Publishers, San Francisco, CA 94104), 학지사, 서울 (ISBN : 8975484130)

(종 설) 김주한 (2000.9): Trends in Research: Bioinformatics, 생화학 분자생물학 소식(Korean Society of Medical Biochemistry and Molecular Biology News) 2000;7(3): 26-32

(종 설) 김주한 (2002.5) 생명정보학과 유전체의학. 예방의학회지. 2002;35(2):83-91

(공 저김기웅, 김성윤, 김주한, 우성일, 윤 종철, 이강욱, 이군희, 이동영, 이정희, 주진형, 한설희 (2003.03.10) CERAD-K (ISBN:89-521-0409-9)

(공 저) 대한의료정보학회 (2003.9) : 김주한10. 전자의무기록」 및「13. 생명정보학, <<보건의료정보학>>, 현문사, 서울 (ISBN : 8980591543)

(공 저) 미국 일시거주 한인 아동 및 청소년의 사회문화적 적응과 귀국 후 재적응을 촉진하기 위한 인터넷 상담교육 프로그램. 박영숙, 박광배, 최상진, 김주한, Antony J. Marsella, 학지사, 서울 (ISBN: 89-7548-219-7)

(공 저) 유비쿼터스 시대의 보건의료 (2004) : 진한엠엔비

(공 저) 미래의학 (Challenging Future Medicine) (2008) 내, “유전체의학과 정보의학의 임상적 활용”: 한국 CTP

(공 저) Medical Biostatistics for Complex Diseases, Chapter. Interpreting Differential Coexpression of Gene Sets. Frank Emmert-Streib Ed. Wiley 

(공 저)  Translational Bioinformatics. Chen and Kann Ed. CRC Press

The Healthy Hospital: Maximizing the satisfaction of patients, health workers, and the community, Ed. Eiji Yano, Ichiro Kawachi, and Mutsuhiro Nakao. (Both English and Japanese versions)
 

Abstracts, Posters, and Invited Speeches

1. Woo JI, Kwon JS, Lee DY, Kim JH, Joo JH (1994) : Pharmacokinetic-pharmacodynamic modelling of the effects of risperidone on central nervous system using spectral EEG analysis in healthy volunteers. Collegium Internationale Neuro-Psychopharmacologicum, Washinton D.C., USA. May 1994. (Poster)

2. Kim JH, Shin DS, Lee DY, Joo JH, Lee JH, Woo JI (1994) : Age of onset and the rate of cerebral degeneration in Alzheimer's disease: MR-based volumetric study. 150's Anual Meeting of American Psychiatric Association, Philadelpia PA. USA. May 1994. (Poster)

3. 김주한, 이정희, 우종인 (1995) : 腦影像術을 通한 腦의 形態學的 分析 方法論 硏究. 대한신경정신의학회, 서울, 1995. 10 (구연)

4. 김주한 (1996) : 월드와이드웹과 포터블 문서양식을 이용한 정신병리학회지의 온라인 출판. 한국 정신병리-진단분류학회 1996년 동계학술대회, 서울중앙병원, 서울, 1996.12 (구연)

5. Kim JH, Lee JS (1997) : Strategy and Architecture of the Latest Hospital Information System. International Medcom Seoul 97, Seoul, Korea, Nov 1997 (Oral)

7. Kim JH, Lee JH, Woo JI (2000) : Topographic analysis of the regional brain atrophy in Alzheimer patient using area-based radial transformation study. 2000 Anual Meeting of American Psychiatric Association, Chicago IL. USA. May 2000. (Poster)

8. Lee KM, Kim JH, Moon BS, Lee HS, Kohane IS (2001) : Deterministic Annealing and Evolutionary Strategy Algorithms for Global Optimization of Clusters in Large-scale Gene Expression Data. Pac Symp Biocomput, Hawaii, HI, Jan 2001 (Poster)

9. 김주한 (2001) : Biochip Informatics. 대한임상병리학회 춘계학술대회, 천안 상록리조트, 충남, 2001.5.18 10. (초청강연)

10. 김주한 (2001) : 선진국에서의 의료정보학 교과과정의 현황. 의과대학 의료정보학 교과과정 개발을 위한 워크샵, 대한의학교육학회, 서울대학교의학연수원, 서울, 2001.05.24 (초청강연)

11. Kim JH (2001) : Biomedical Informatics: Emergence of New Medicine. Asan-Harvard Symposium on Genomics, Proteomics, & Future Medicine. Harvard International, Asan Medical Center, Seoul, Korea, 2001.07.3-4 (Invited Speech)

12. 김주한 (2001) : 생명정보유전체의학. 대한이비인후과학회추계학술대회, 대한이비인후과학회, 센트럴시티, 서울, 2001.10.12 (초청강연)

13. 김주한 (2001) : 방사선종양학과 생명정보학, 대한방사선종양학회추계학술대회, 대한방사선종양학회, 서울대학교병원임상의학연구소, 서울, 2001.10.13 (초청강연)

14. 김주한 (2001) : Currents in Integrative Biochip Informatics. 대한생물정보학회 생물정보웍샵, 대한생물정보학회, 서울대학교 엔지니어링하우스, 서울, 2001.10.17 (초청강연)

15. 김주한 (2001) : 생명정보유전체의학. 대한신경정신의학회 추계학술대회, 대한신경정신의학회, 잠실롯데호텔, 서울, 2001.10.25 (초청강연)

16. 김주한 (2001) : 온라인 의학연수교육의 현황. 심포지움 <인터넷 시대의 의학연수교육 발전방안>, 대한의학교육학회, 서울대학교의학연수원, 서울, 2001.11.16 (초청강연)

17. 김주한 (2001) : 유전체의학 연구와 바이오인포매틱스. <심포지움 "유 전체의학과 생명정보>, 서울대학교병원 임상의학연구소, 서울, 2001.11.20 (초청강연)

19. 김주한 (2001) : Bioinformatics & Genomic Medicine. 대한유방암학회학술대회. 대한유방암학회, 충남대학교, 대전, 충남, 2001.11.24 (초청강연)

20. 김주한 (2001) : 의료정보의 보안과 사적비밀보장. 연건포럼 2001, 서울대학교 보건대학원, 서울, 2001.11.30 (초청강연)

21. Kim JH, Ohno-Machado L, Kohane IS (2002) Unsupervised Learning from Gene Expression Data: The K-Partitioning Matrix Incision Tree Algorithm. MGED IV, Microarray Gene Expression Data Group, Hynes Convention Center, Boston, MA, Feb. 13-16, 2002 (Poster)

22. Park PJ, Kim JH, Kohane IS. (2002) Robust Nonlinear Normalization of Microarray Data. MGED IV, Microarray Gene Expression Data Group, Hynes Convention Center, Boston, MA, Feb. 13-16, 2002 (Poster)

23. Kim JH (2002) Bioinformatics & Genomic Medicine. Japan-Korea Bioinformatics Training Course, Center for Informatoin Biology and DNA Data Bank of Japan, National Institute of Genetics, Mishima, Japan (invited speech)

24. 김주한 (2002) : Postgenome informatics in Psychiatry & Psychopharmcology 대 한정신약물학회 춘계학술대회 Mar 2002, 서울 2002.3.29 (초청강연)

25. Kuo WP, Jenssen TK, Kim JH, Kohane IS, Ohno-Machado L (2002) : An Analysis of Matched mRNA Measurements from the High-Density HU6800 and cDNA Microarrays. The Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB2002), Washington D.C., April 18-21 (Poster)

26. Schinke M., Shioi T., Kim J.H., Riggi L., Chen, I.B., Quing N., Whipple M., Kong S., Converso K.L., Kohane I.S., Izumo S. Microarray-based analysis of gene expression during pressure-overload induced cardiac hypertrophy. 67th Cold Spring Harbor Symposium on Quantitative Biology: The Cardiovascular System, Bruce Stillman & David Stewart, Cold Spring Harbor Laboratory, New York, May 29 - June 3, 2002.

27. Chronobiological Analysis for the Reliable Identification of Cell-Cycle Regulated Genes from Gene Expression Profiles. ISMB2002

28. Nephromgenomics: Dissecting the process of an experimental glomerulonephritis. Hwang CI, Kim JH, Ha IS, Cao A, Choi S, Kim JH, Park WY. PSB2003

29. Poor correlation between the new statistical and the old empirical algorithms for gene expression analysis. Kim JH, Kuo WP, Park WY, Kohane IS. PSB2003

30. Social Networks in Microarray Gene Expression Data

31. 생화학회, ismb

Essays

인터넷 신드롬<<과 학동아>> 1996. 12, 동 아일보사

「사 람과 컴퓨터: 사이버리즘과 공주병」 <<인 터넷>> 1997.1, 정 보시대

「사 람과 컴퓨터: 사이버스페이스의 포나와 헤커」 <<인 터넷>> 1997.2, 정 보시대

「사 람과 컴퓨터: 다중인격의 실험장 사이버스페이스<<인 터넷>> 1997.3, 정 보시대

「사 람과 컴퓨터: 인터넷 중독증 자가치료 7 단계」 <<인 터넷>> 1997.4, 정 보시대

「사 람과 컴퓨터: 사이버스페이스의 <<인 터넷>> 1997.5, 정 보시대

「사 람과 컴퓨터: 복제인간과 디지털클론<<인 터넷>> 1997.6, 정 보시대

「사 람과 컴퓨터: 사이버스페이스의 만남과 헤어짐<<인 터넷>> 1997.7, 정 보시대

「사 람과 컴퓨터: 정신과 가상」 <<인 터넷>> 1997.8, 정 보시대

「사 람과 컴퓨터: 추링을 살리자!: 최초의 SOS-Email<<인 터넷>> 1997.9, 정 보시대

「사 람과 컴퓨터: 히포크라테스와 파파라초」 <<인 터넷>> 1997.10, 정 보시대

「사 람과 컴퓨터: 사이버영화 접속<<인 터넷>> 1997.11, 정 보시대

「사 람과 컴퓨터: 사이버의학」 <<인 터넷>> 1997.12, 정 보시대

「사 람과 컴퓨터: 사이버정글 사이보그 병사」 <<인 터넷>> 1998.1, 정 보시대

「사 람과 컴퓨터: 아직도 컴퓨터를 배우십니까?<<인 터넷>> 1998.2, 정 보시대

「사 람과 컴퓨터: 정보화시대의 창과 방패」 <<인 터넷>> 1998.3, 정 보시대

「사 이버 중독증」 <<과 학동아>> 2000.5, 동 아일보사

「너 무나 인간적인」디지털 의료 <<인 에이블>> 2001.10, 정보시대

SNUBI:
        Snubi's Not Unics, Biomedical Informatics.