Bioinformatics for Genomic Medicine : ü

 

åӱ:  

ǽð: 2:00 ~ 5:00

: Ǵ뺻 310ȣ

: B4GM2006 Խ

: (8318, davefriend99@gmail.com)

 

Date

Type

Issues

Lecturer

Readings

03 13

 

Administriva

Lecture

Introduction

 

03 20

Book reading

1 û

 

Lecture

Internet Resources and Databases

03 27

Book reading

2-1 ڻ ͺ̽

  ̿

Lecture

Emerging Genomic Technologies

04 03

Book reading

2-2

Lecture

Database Theory

04 10

Book reading

2-3 ڻ ͺ̽ ο

 

Lecture

Normalization / Clustering

04 17

Book reading

3-1 缺 ˻

 

Lecture

Unsupervised Learning

04 24

Term Project proposal

Term Project Proposal Presentation

Gene Expression Profile in Proliferation and Apoptosis of Human Hepatic Stellate Cell Using Microarray
Multicenter database of clinical course of CKD patients
OMIM DB ̿ Ǻ ȯ DB
Importing GEO data into MIAME format-based information System
Predicting chromosome instability in cancer using gene expression data and location information
Identification of microRNA function by target prediction and expression profiling ̿
μ DB
Meta-analysis : breast cancer-related pathway study
Extension of disease-related pathway using text mining
Ʊü(IVF) DBȭ
󼱾 ͺ̽

05 01

Book reading

3-2

Lecture

Differential Expression

05 08

Lecture

Ư Ontology Computing

ȫ

Lecture

Mulitple Hypothesis Testing

05 15

Book reading

4-1 Ʈũ ǥ

 

Lecture

Ư Machine Learning

05 22

Lecture

Classification

Lecture

Standards and Databasing Expression

05 29

Book reading

4-2 ȭ Ʈũ

 

Lecture

Gene Ontology and Pathways

06 05

Term Project

Term Project Presentation - I

Predicting chromosome instability in cancer using gene expression data and location information

Importing GEO data into MIAME format-based information System
Meta analysis of breast cancer cell line for toxgenomics study
Biological process classification in disease related pathway map

06 12

Term Project

Term Project Presentation - II

󼱾 ͺ̽
Ʊü(IVF) DBȭ
μ DB
Identification of microRNA function by target prediction and expression profiling     (DB) ̿
OMIM DB ̿ Ǻ ȯ DB                                   (DB)
Multicenter database of clinical course of CKD patients
Gene Expression Profile in Proliferation and Apoptosis of Human Hepatic Stellate Cell Using Microarray

Administrivia

3 Դϴ. 򰡴 

 20%, 

  20%, 

 Term project proposal 20%, 

 Term project presentation Term paper 40% Դϴ.

¿ ⼮Ͻñ ̸ Readings а ʽÿ.

ϴ.

Textbooks, recommended

Ʈ ô , ̳
Statistical analysis of gene expression microarray data, Terry Speed

History

Bioinformatics for Genomic Medicine 2003

Bioinformatics for Genomic Medicine 2004