disease [Jihun's wiki]

추적: • disease

The modular nature of genetic diseases.
Oti M, Brunner HG
Clin Genet71(1) p1-11 (2007 Jan) 10.1111/j.1399-0004.2006.00708.x

Using multiple ontologies to integrate complex biological data.
Shimoyama M, Petri V, Pasko D, Bromberg S, Wu W, Chen J, Nenasheva N, Kwitek A, Twigger S, Jacob H
Comp Funct Genomics6(7-8) p373-8 (2005) 10.1002/cfg.498

Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining.
Yu S, Van Vooren S, Tranchevent LC, De Moor B, Moreau Y
Bioinformatics24(16) pi119-25 (2008 Aug 15) 10.1093/bioinformatics/btn291

Identifying disease-causal genes using Semantic Web-based representation of integrated genomic and phenomic knowledge.
Gudivada RC, Qu XA, Chen J, Jegga AG, Neumann EK, Aronow BJ
J Biomed Inform41(5) p717-29 (2008 Oct) 10.1016/j.jbi.2008.07.004

The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease.
Robinson PN, Köhler S, Bauer S, Seelow D, Horn D, Mundlos S
Am J Hum Genet83(5) p610-5 (2008 Nov) 10.1016/j.ajhg.2008.09.017

Using an integrated ontology and information model for querying and reasoning about phenotypes: The case of autism.
Tu SW, Tennakoon L, O'Connor M, Shankar R, Das A
AMIA Annu Symp Proc() p727-31 (2008 Nov 6)

PhenoGO: an integrated resource for the multiscale mining of clinical and biological data.
Sam LT, Mendonça EA, Li J, Blake J, Friedman C, Lussier YA
BMC Bioinformatics10 Suppl 2() pS8 (2009 Feb 5) 10.1186/1471-2105-10-S2-S8

Mapping gene associations in human mitochondria using clinical disease phenotypes.
Scharfe C, Lu HH, Neuenburg JK, Allen EA, Li GC, Klopstock T, Cowan TM, Enns GM, Davis RW
PLoS Comput Biol5(4) pe1000374 (2009 Apr) 10.1371/journal.pcbi.1000374

An integrative network approach to map the transcriptome to the phenome.
Mehan MR, Nunez-Iglesias J, Kalakrishnan M, Waterman MS, Zhou XJ
J Comput Biol16(8) p1023-34 (2009 Aug) 10.1089/cmb.2009.0037

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease.
Hancock JM, Mallon AM, Beck T, Gkoutos GV, Mungall C, Schofield PN
Mamm Genome20(8) p457-61 (2009 Aug) 10.1007/s00335-009-9208-3

Linking genes to diseases: it's all in the data.
Tiffin N, Andrade-Navarro MA, Perez-Iratxeta C
Genome Med1(8) p77 (2009 Aug 7) 10.1186/gm77

Phenotypic categorization of genetic skin diseases reveals new relations between phenotypes, genes and pathways.
Sadreyev RI, Feramisco JD, Tsao H, Grishin NV
Bioinformatics25(22) p2891-6 (2009 Nov 15) 10.1093/bioinformatics/btp538

Between proteins and phenotypes: annotation and interpretation of mutations.
Baker CJ, Rebholz-Schuhmann D
BMC Bioinformatics10 Suppl 8() pI1 (2009 Aug 27) 10.1186/1471-2105-10-S8-I1

Clinical diagnostics in human genetics with semantic similarity searches in ontologies.
Köhler S, Schulz MH, Krawitz P, Bauer S, Dölken S, Ott CE, Mundlos C, Horn D, Mundlos S, Robinson PN
Am J Hum Genet85(4) p457-64 (2009 Oct) 10.1016/j.ajhg.2009.09.003

Network properties of complex human disease genes identified through genome-wide association studies.
Barrenas F, Chavali S, Holme P, Mobini R, Benson M
PLoS One4(11) pe8090 (2009 Nov 30) 10.1371/journal.pone.0008090

Linking human diseases to animal models using ontology-based phenotype annotation.
Washington NL, Haendel MA, Mungall CJ, Ashburner M, Westerfield M, Lewis SE
PLoS Biol7(11) pe1000247 (2009 Nov) 10.1371/journal.pbio.1000247

Search of phenotype related candidate genes using gene ontology-based semantic similarity and protein interaction information: application to Brugada syndrome.
Massanet R, Gallardo-Chacon JJ, Caminal P, Perera A
Conf Proc IEEE Eng Med Biol Soc2009() p7079-82 (2009) 10.1109/IEMBS.2009.5332918

The biological coherence of human phenome databases.
Oti M, Huynen MA, Brunner HG
Am J Hum Genet85(6) p801-8 (2009 Dec) 10.1016/j.ajhg.2009.10.026

The mammalian phenotype ontology: enabling robust annotation and comparative analysis.
Smith CL, Eppig JT
Wiley Interdiscip Rev Syst Biol Med1(3) p390-9 (2009 Nov-Dec) 10.1002/wsbm.44

The Human Variome Project (HVP) 2009 Forum "Towards Establishing Standards".
Howard HJ, Horaitis O, Cotton RG, Vihinen M, Dalgleish R, Robinson P, Brookes AJ, Axton M, Hoffmann R, Tuffery-Giraud S
Hum Mutat31(3) p366-7 (2010 Mar) 10.1002/humu.21175

Integrating phenotype ontologies across multiple species.
Mungall CJ, Gkoutos GV, Smith CL, Haendel MA, Lewis SE, Ashburner M
Genome Biol11(1) pR2 (2010 Jan 8) 10.1186/gb-2010-11-1-r2

Systematic analysis, comparison, and integration of disease based human genetic association data and mouse genetic phenotypic information.
Zhang Y, De S, Garner JR, Smith K, Wang SA, Becker KG
BMC Med Genomics3() p1 (2010 Jan 21) 10.1186/1755-8794-3-1

An integrative modular approach to systematically predict gene-phenotype associations.
Mehan MR, Nunez-Iglesias J, Dai C, Waterman MS, Zhou XJ
BMC Bioinformatics11 Suppl 1() pS62 (2010 Jan 18) 10.1186/1471-2105-11-S1-S62

Genome-wide inferring gene-phenotype relationship by walking on the heterogeneous network.
Li Y, Patra JC
Bioinformatics26(9) p1219-24 (2010 May 1) 10.1093/bioinformatics/btq108

Two approaches to integrating phenotype and clinical information.
Burgun A, Mougin F, Bodenreider O
AMIA Annu Symp Proc2009() p75-9 (2009 Nov 14)

The human phenotype ontology.
Robinson PN, Mundlos S
Clin Genet77(6) p525-34 (2010 Jun) 10.1111/j.1399-0004.2010.01436.x

Clinical assessment incorporating a personal genome.
Ashley EA, Butte AJ, Wheeler MT, Chen R, Klein TE, Dewey FE, Dudley JT, Ormond KE, Pavlovic A, Morgan AA, Pushkarev D, Neff NF, Hudgins L, Gong L, Hodges LM, Berlin DS, Thorn CF, Sangkuhl K, Hebert JM, Woon M, Sagreiya H, Whaley R, Knowles JW, Chou MF, Thakuria JV, Rosenbaum AM, Zaranek AW, Church GM, Greely HT, Quake SR, Altman RB
Lancet375(9725) p1525-35 (2010 May 1) 10.1016/S0140-6736(10)60452-7

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature.
Dahdul WM, Balhoff JP, Engeman J, Grande T, Hilton EJ, Kothari C, Lapp H, Lundberg JG, Midford PE, Vision TJ, Westerfield M, Mabee PM
PLoS One5(5) pe10708 (2010 May 20) 10.1371/journal.pone.0010708

PhenoHM: human-mouse comparative phenome-genome server.
Sardana D, Vasa S, Vepachedu N, Chen J, Gudivada RC, Aronow BJ, Jegga AG
Nucleic Acids Res38(Web Server issue) pW165-74 (2010 Jul) 10.1093/nar/gkq472

Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes.
Shi W, Bessarabova M, Dosymbekov D, Dezso Z, Nikolskaya T, Dudoladova M, Serebryiskaya T, Bugrim A, Guryanov A, Brennan RJ, Shah R, Dopazo J, Chen M, Deng Y, Shi T, Jurman G, Furlanello C, Thomas RS, Corton JC, Tong W, Shi L, Nikolsky Y
Pharmacogenomics J10(4) p310-23 (2010 Aug) 10.1038/tpj.2010.35

Improving disease gene prioritization using the semantic similarity of Gene Ontology terms.
Schlicker A, Lengauer T, Albrecht M
Bioinformatics26(18) pi561-7 (2010 Sep 15) 10.1093/bioinformatics/btq384

VeryGene: linking tissue-specific genes to diseases, drugs and beyond for knowledge discovery.
Yang X, Ye Y, Wang G, Huang H, Yu D, Liang S
Physiol Genomics() p (2011 Jan 18) 10.1152/physiolgenomics.00178.2010

Automated ontological gene annotation for computing disease similarity.
Mathur S, Dinakarpandian D
AMIA Summits Transl Sci Proc2010() p12-6 (2010 Mar 1)

AGRA: Analysis of Gene Ranking Algorithms.
Kocbek S, Sætre R, Stiglic G, Kim JD, Pernek I, Tsuruoka Y, Kokol P, Ananiadou S, Tsujii J
Bioinformatics() p (2011 Feb 23) 10.1093/bioinformatics/btr097