BioEMR Team

Related projects:

  • BioEMR: 임상정보와 바이오정보의 국제표준 기반 통합 모델링 및 바이오 EMR 연동기술
  • Tissue MicroArray-Object Model (TMA-OM)

    Related research:

  • Communication CDA-based structured clinical document by 서화정
  • Calculate the optimal subset of UMLS vocabularies by 이정애
  • The Performance Evaluation of Efficient MAGE-ML Storage Strategies by 김세영
  • Integrating Microarray Gene Expression- Object Model and Clinical Document Architecture using CDE by 박유랑
  • Electronic Clinical Trial (eCT) Management System 개발 by 김옥구
  • Tissue MicroArray-Object Model (TMA-OM) by 이혜원
  • Clinico-Histopathological Metadata Registry (CHMR) by 박유랑
  • Cancer Genomics-Object Model (CAGE-OM) by 박유랑

    Date: every Tuesday 9:00 A.M. (Weekly meeting)
    Members(6): 박유랑,이혜원, 심재현, 김도균, 우정훈,조성범(helper), 윤혜성(helper)
    History: 2006 2005 2004 2003

    2006

    5  May

    2 박유랑: CHMR 간략화 및 UMLS 연동  
    9 이혜원: Progress in developing template in Xperanto-TMA  
    16 김도균: Progress in KMA drug database  
    23 우정훈:  
    30 박유랑:  

    4 April

    4 우정훈: progress in GTD database - localize CTD  
    11 박유랑: BioEMR 프로젝트 진행계획 및 유방암센터 임상자료 Viewer 개발  
    18 김도균: KMA Drug DB - KMA web interface  
    25 우정훈: Progress in GTD database - Parsing localized data for DB input file

    3 March

    2 김도균: Implementation ChromiViz for integration with bioCANDi  
    7 우정훈: Research plan (about toxicogenomics meta DB)  
    14 이혜원: Progress in Xperanto-TMA  
    21 우정훈: Progress in GTD database
    28 김도균: KMA drug DB  

    2 February

    2 박유랑: CHMR & CHMR Form builder  
    9 이혜원: Xperanto-Tox: strategy for data modeling toxicogenomics experiment  
    16 한주 연기 동계웍샵(KOGO-KSBI)  
    23 심재현: KMA Drug DB

    1 January

    5 윤혜성: Comments and Improvements of proposing method  
    12 박유랑: CHMR 현황 및 진행계획  
    19 이혜원: Xperanto-TMA: implementation for applying templates
    26 심재현: 강남센터 검진자료 기반 데이터웨어하우스 구축 및 웹기반 통합분석 시스템 구축

     

    2005

    12 December

    1 이혜원: Xperanto-Tox: Integration of Xperanto and Xperanto-TMA for toxicogenomics  
    8 박유랑: CHMR: Clinico-Histopahtological Metadata Registry  
    15 윤혜성: An Evolutionary Approach for Clustering Problem in Data Mining
    22 이혜원: Draft data model for representing toxicological assessments
    29 박유랑: HL7 Clinical Document Architecture, Release 2

    11 November

    3 이혜원: Approaches for integration of XPERANTO and XPERANTO-TMA  
    10 박유랑: Cancer Genomics Object Model :An Object Model for Cancer Research using Functional Genomics Data  
    17 이영주: 류마티스내과 의뢰 chip 실험
    24 윤혜성 HCE Method based on GA for Combining Different Cluster Results

    10 October

    6  Lab 이혜원: Liver Cancer Data Analysis: Understanding clinical data on liver cancer patients  
    Research 박유랑: A Framework for storing various biological material and multiple functional genomics data : an application in cancer genomics data
    13  Lab 박유랑: Cancer Genomics Object Model (progress)  
    20  Lab 이영주: 의뢰샘플 chip실험
    Research 유방암센터: BioEMR
    27  Lab 윤혜성: Heterogeneous Ensemble
    Research 세종대:  

    September

    1 이혜원: BioCandi Module: Filtering Genes with Low Variance
    8 윤혜성: The problem of combining multiple partitions of a set of objects
    15 박유랑: A Framework for storing various biological material information and functional genomics data (Feasibility Study)
    22 이영주: Affymetrix Test chip 실험
    29 윤혜성: Decision tree based ensemble methods
     

    August

    4 윤혜성: Heterogeneous Ensemble
    11 이혜원: Xperanto-TMA : progress in the "XML Export" function
    18 박유랑: A Framework for storing various biological material information and functional genomics data
    25 이영주: affymetrix chip실험 과정
     

    July

    7 유방암센터: 제2세부 진행상황
    14 세종대: 취소
    21 김옥구: PhactaX 기능개선
    28 이영주: chip 종류에 따른 실험방법 비교
     

    June

    2 김옥구 : PhactaManager : 임상시험자료 추출모듈 개발
    9 세종대 : TMA document generator 설계 및 구현
    16 이혜원 : Xperanto-TMA 개발 진행상황: View 부분 구현과 Vocabulary 입력
    23 박유랑 : ISO/IEC 11179 와 Entity-Attribute-Value 모델 기반의 임상자료 저장소의 구현
    30 김세영 :  
    27 박유랑 : BioEMR 프로젝트 진행사항 – Clinical data storage
     

    May

    12 유의혁- 세종대 : Sample Document을 용한 RDB와 NXD 저장 비교
    19 박유랑 : BioEMR 프로젝트: clinical data storage
    26 권혜진 : BioEMR 진행계획(제 2 세부과제)
    16 박유랑 :   BioEMR 프로젝트 진행계획

    April

    7 황기태: BioEMR 프로젝트 관련 유방암 센터 발표
    14 김옥구: PhactaDictionary (Vocabulary 코딩) 개발
    21 이혜원 : Xperanto-TMA : Test using Real Data
    28 김세영 : Comprehensive Solution to the XMLtoRelational Mapping Problem
    18 김옥구 : Monthly progress : NRL PhactaX 개발현황 및 완료계획

     

    March

    8 박유랑: Common Data Element(CDE)의 저장 포맷(ISO 11179)과 HL7 Template의 최신 동향
    15 김옥구 : PhactaForm: 공유 eCRF 관리 웹사이트 (진행현황)
    24 이혜원 :   Xperanto-TMA system 개발 진행사항
    31 박유랑 :   Cancer Genomics Object Model 진행사항
    21 이혜원 :   Monthly progress : Progress in developing TMA-OM and Xperanto-TMA

     

    Febuary

    1 김옥구:   PhactaForm: 공유 eCRF 관리 웹사이트
    15 이혜원 :   Analysis method review of TMA data for querying Xperanto-TMA
    22 서화정 :   유방암센터 자료유형 분석 및 구조화된 임상문서의 구성 전략 II
    26 박유랑 :   Monthly progress : Implementation of Cancer Genomics Object Model

     

    January

    4 이혜원:   Object model and database for tissue microarray
    11 김옥구 :   PhactaManager(임상시험자료관리시스템) 개발 현황
    18 박유랑 :   Cancer Genomics Object Model(2)
    25 서화정 :   유방암센터 자료유형 분석 및 구조화된 임상문서의 구성 전략
    22 김옥구 :   Monthly progress : PhactaManager(임상시험자료관리시스템) 개발 현황

     

    2004

    12 December

    7 홍승권 :   Factors affercting the diffusion of EMR in hospital from a physician's perspective
    14 김세영 :   LegoDB: Customizing Relational Storage for XML Documents
    21 서화정 :   Works in progress - Clinical document generation & retrieval module (2)
    28 박유랑 :   First Step: An Object model for Oncology research using Microaray (MAGE/Onc – OM)
    13 홍승권 :   Monthly progress : Factors affercting the diffusion of EMR in hospital from a physician's perspective

     

    11 November

    2 홍승권 :   Doctor-patient relationship in the era of e-health
    16 서화정 :   Works in progress - Clinical document generation & retrieval module (1)
    23 박유랑 :   Guideline and web application for Microarray Experiment in Oncogenomics
    30 김옥구 :   임상시험 자료 저장 구현
    15 서화정 :   Monthly progress : Intorduction of CDA related applications and works in progress

     

    10 October

    12 김세영 :   Development of XML-based Clinical Document Generation Module
    12 서화정 :   Implementation of XML-based clinical document as standard for communication
    19 박유랑 :   Minimum Information About a Microarray Experiment for Oncology research (MIAME/Oncology)
    26 김옥구 :   The manuscript for the introduction of PhactaManager
    18 박유랑 :   Monthly progress : Integration of MAGE-OM and CDA

     

    September

    6 서화정 :   Plan of Paper submission
    14 박유랑 :   INFOGENMED :
     A virtual laboratory for accessing and integrating genetic and medical information for health applications
    21 김옥구 :   전자 증례기록지에서의 SNP 입력 설계
    13 김옥구 :   Monthly progress : 임상시험 수행관리 시스템 : 분석, 설계 및 PhactaDesigner 개발

     

    August

    9   Seo:   OCS와 BtoB연계방안  
    16   Park:   An object model and database for biomedical informatics  
    23   Okgu:   PhactaDesigner - eCRF design program  
    30   Hong:   Social Factors Affecting Diffusion of the Telemedicine from a Physicians' Perspective  
    17   Hong:  Monthly progress : Clinical decision making at the point-of-care  

     

    July

    5   Goo:   Design of eCRF entry module  
    26   Hong:   원격진료 시행 시 도출될 사회, 문화적, 경제적 효과  
    6   Lee:   Monthly progress : Mapping between the Disease Names of OMIM and MeSH  

     

    June

    7   Seo:   Evaluation Strategy of Clinical Document Prototype  
    14   Hong:   Characteristics of GLIF3  
    21   Lee:   A study of effective UMLS concept indexing in radiology reports  
    park:   Integrating MAGE-OM and CDA using CDE
    28   Park:   Integrating MAGE-OM and CDA using CDE(Generating Template)  
    8   Park:   Monthly progress : Integrating MAGE-OM and CDA using CDE(first step: generating HL7 Template)  

     

    May

    3   Seo:   Architecture of a clinical document based on the definition of section and specific instance  
    10   Lee:   방사선과 보고서의 효율적인 UMLS concept indexing을 위한 연구(보완 및 결론, 계획)  
    17   Hong:   Representing clinical guidelines in GLIF (Overview of GLIF)  
    24   Park:   Integration of MAGE-OM and CDA - 1 (modeling CDA template for clinical data in microarray)  
    31   Goo:   XML Schema design for CRF entry pages  
    11   Hong:   Monthly progress : Privacy to the electronic medical record and telemedicine  

     

    April

    12   Park:   CDA Release 1.0 DTD Integration - second story  
    19   Goo:   Introduction of e-Clinical Trial System  
    13   Lee:   Monthly progress : Optimized UMLS vocabulary  

     

    March

    8   Park:   CDA Release 1.0 DTD Integration  
    15   Seo:   Presenting of document constraints for structured discharge note  
    22   Lee:   UMLS indexing 결과 보고  
    29   Hong:   Representing clinical guidelines in GLIF  
    16   Seo:   Monthly progress : Presenting of document constraints for structured discharge note  

     

    February

    2   Park:   Implementation CDE(common data element) in TrialDB  
    9   Seo:   Generating CDA DTD using DTDGenerator tool  
    11   Yoo:   HL7 Reference Information Model  
    16   Lee:   UMLS indexing of test set  
    23   BioEMR   Action Plan of CDMS Developemnt  
    17   Park:   Monthly progress : Implementation plan for TrialDB  

     

    January

    5   Hong:   Review of Guideline  
    12   Seo:   Relational data in XML (for clinical document processing)  
    19   Lee:   Works in progress  
    20   Hong:   Monthly progress : Clinical Guideline  

     

    2003

    12  December

    1   Hong:   Review of Guideline  
    8   Seo:   Design of standardized XML DTD for exchange structured discharge note  
    15   Lee:   연구 진행사항  
    22   Park:   Review of caCORE  
    23   Seo:   Monthly progress : Web-based Clinical Data Management System  
      Lee:   Monthly progress : Optimized vocabulary DB  

     

    11  November

    3   Lee:   Arden Syntax Arden Syntax Spec
      Seo:   Schedule of CDA-based Data Structure design  
    10   Park:   Clinical Trial Registry Systems  
    17   Lee:   Manual indexing and programming  
      Hong:   의료계의 New Paradigm  
    24   Park:   Clinical Trial Registry Systems (review of TrialDB)  
    25   Seo:   Monthly Progress  

     

    10  October

    6   Seo:   Design of CDA-based Data Structure  
      Hong:   강남센터, 분당병원 charting 구조 분석  
    13   Lee:   Mapping free text into UMLS concepts - Progress  
      Park:   About NCI CDE(Common Data Element)  
    27   Hong:   Critical Pathway  
    28   Hong:   Monthly progress : Critical Pathway  

     

    September

    1   Lee:   Mapping free text into UMLS concepts  
    15   Hong:   근골격계질환연구 chart의 예  
      Park:   Cancer  
    22   Seo:   Design of CDA-based CDMS schema - Clinical Information Table  
      Lee:   Mapping free text into UMLS concepts 2  
    29   Park:   Cancer Coding Standard ICD-O  
    30   Seo:   Works in progress  

     

    August

    4 Design Objectives
    • Data modeling : CDA 표준에 대응하는 임상진료기록의 자료구조를 도출 / 데이터 베이스의 설계 및 구축
    • XML-based Clinical document generation : CDA 및 MAGE-OM표준에 대응하는 XML형태의 문서로 변환
    • User Interface : Data Entry, Display, Storage and Retrieval data
    • Data Integration : 암 역학정보 / 마이크로어레이 모델과의 통합
    Further Works
    • Hong : 강남센터, 분당병원 charting 구조 분석
    • Lee : Coding system의 활용 예
    • Park : 암역학 DB schema 설계
    • Seo : CDA-based Clinical inormation schema 설계
    11   Park: 역학 DB(CancerDB) schema 분석 CancerDB 설문지
    CancerDB 코호트 변수
      Seo: Stanford Univ.- TrailDB database schema 분석
    국립암센타 - 암검진 웹 인터페이스
    Trial/DB developer's manual
    18   Hong: 강남센터, 분당병원 charting 구조 분석  
      Lee: Coding system의 활용 예  
    25   Seo: Design of CDA-based CDMS schema - Patient Data Table  
      park: 다른 나라의 cancer DB 구축 사례- NCI caCORE I  
    26   Seo: Monthly : Introduction to Clinical Informatics