BioEMR Team

Related projects:

  • BioEMR: 임상정보와 바이오정보의 국제표준 기반 통합 모델링 및 바이오 EMR 연동기술
  • Tissue MicroArray-Object Model (TMA-OM)

    Related research:

  • Communication CDA-based structured clinical document by 서화정
  • Calculate the optimal subset of UMLS vocabularies by 이정애
  • The Performance Evaluation of Efficient MAGE-ML Storage Strategies by 김세영
  • Integrating Microarray Gene Expression- Object Model and Clinical Document Architecture using CDE by 박유랑
  • Electronic Clinical Trial (eCT) Management System 개발 by 김옥구
  • Tissue MicroArray-Object Model (TMA-OM) by 이혜원
  • Clinico-Histopathological Metadata Registry (CHMR) by 박유랑
  • Cancer Genomics-Object Model (CAGE-OM) by 박유랑

    Date: every Tuesday 9:00 A.M. (Weekly meeting)
    Members(6): 박유랑,이혜원, 심재현, 김도균, 우정훈,조성범(helper), 윤혜성(helper)
    History: 2006 2005 2004 2003

    2006

    5  May
    2 박유랑: CHMR 간략화 및 UMLS 연동 　
    9 이혜원: Progress in developing template in Xperanto-TMA 　
    16 김도균: Progress in KMA drug database 　
    23 우정훈: 　
    30 박유랑: 　

    4 April
    4 우정훈: progress in GTD database - localize CTD 　
    11 박유랑: BioEMR 프로젝트 진행계획 및 유방암센터 임상자료 Viewer 개발 　
    18 김도균: KMA Drug DB - KMA web interface 　
    25 우정훈: Progress in GTD database - Parsing localized data for DB input file

    3 March
    2 김도균: Implementation ChromiViz for integration with bioCANDi 　
    7 우정훈: Research plan (about toxicogenomics meta DB) 　
    14 이혜원: Progress in Xperanto-TMA 　
    21 우정훈: Progress in GTD database
    28 김도균: KMA drug DB 　

    2 February
    2 박유랑: CHMR & CHMR Form builder 　
    9 이혜원: Xperanto-Tox: strategy for data modeling toxicogenomics experiment 　
    16 한주 연기 동계웍샵(KOGO-KSBI) 　
    23 심재현: KMA Drug DB

    1 January
    5 윤혜성: Comments and Improvements of proposing method 　
    12 박유랑: CHMR 현황 및 진행계획 　
    19 이혜원: Xperanto-TMA: implementation for applying templates
    26 심재현: 강남센터 검진자료 기반 데이터웨어하우스 구축 및 웹기반 통합분석 시스템 구축

    　

    2005

    12 December
    1 이혜원: Xperanto-Tox: Integration of Xperanto and Xperanto-TMA for toxicogenomics 　
    8 박유랑: CHMR: Clinico-Histopahtological Metadata Registry 　
    15 윤혜성: An Evolutionary Approach for Clustering Problem in Data Mining
    22 이혜원: Draft data model for representing toxicological assessments
    29 박유랑: HL7 Clinical Document Architecture, Release 2

    11 November
    3 이혜원: Approaches for integration of XPERANTO and XPERANTO-TMA 　
    10 박유랑: Cancer Genomics Object Model :An Object Model for Cancer Research using Functional Genomics Data 　
    17 이영주: 류마티스내과 의뢰 chip 실험
    24 윤혜성 HCE Method based on GA for Combining Different Cluster Results

    10 October
    6  Lab 이혜원: Liver Cancer Data Analysis: Understanding clinical data on liver cancer patients 　
    Research 박유랑: A Framework for storing various biological material and multiple functional genomics data : an application in cancer genomics data
    13  Lab 박유랑: Cancer Genomics Object Model (progress) 　
    20  Lab 이영주: 의뢰샘플 chip실험
    Research 유방암센터: BioEMR
    27  Lab 윤혜성: Heterogeneous Ensemble
    Research 세종대: 　

    9 September
    1 이혜원: BioCandi Module: Filtering Genes with Low Variance
    8 윤혜성: The problem of combining multiple partitions of a set of objects
    15 박유랑: A Framework for storing various biological material information and functional genomics data (Feasibility Study)
    22 이영주: Affymetrix Test chip 실험
    29 윤혜성: Decision tree based ensemble methods
    　

    8 August
    4 윤혜성: Heterogeneous Ensemble
    11 이혜원: Xperanto-TMA : progress in the "XML Export" function
    18 박유랑: A Framework for storing various biological material information and functional genomics data
    25 이영주: affymetrix chip실험 과정
    　

    7 July
    7 유방암센터: 제2세부 진행상황
    14 세종대: 취소
    21 김옥구: PhactaX 기능개선
    28 이영주: chip 종류에 따른 실험방법 비교
    　

    6 June
    2 김옥구 : PhactaManager : 임상시험자료 추출모듈 개발
    9 세종대 : TMA document generator 설계 및 구현
    16 이혜원 : Xperanto-TMA 개발 진행상황: View 부분 구현과 Vocabulary 입력
    23 박유랑 : ISO/IEC 11179 와 Entity-Attribute-Value 모델 기반의 임상자료 저장소의 구현
    30 김세영 : 　
    27 박유랑 : BioEMR 프로젝트 진행사항 – Clinical data storage
    　

    5 May
    12 유의혁- 세종대 : Sample Document을 용한 RDB와 NXD 저장 비교
    19 박유랑 : BioEMR 프로젝트: clinical data storage
    26 권혜진 : BioEMR 진행계획(제 2 세부과제)
    16 박유랑 :   BioEMR 프로젝트 진행계획

    4 April
    7 황기태: BioEMR 프로젝트 관련 유방암 센터 발표
    14 김옥구: PhactaDictionary (Vocabulary 코딩) 개발
    21 이혜원 : Xperanto-TMA : Test using Real Data
    28 김세영 : Comprehensive Solution to the XMLtoRelational Mapping Problem
    18 김옥구 : Monthly progress : NRL PhactaX 개발현황 및 완료계획

    　

    3 March
    8 박유랑: Common Data Element(CDE)의 저장 포맷(ISO 11179)과 HL7 Template의 최신 동향
    15 김옥구 : PhactaForm: 공유 eCRF 관리 웹사이트 (진행현황)
    24 이혜원 :   Xperanto-TMA system 개발 진행사항
    31 박유랑 :   Cancer Genomics Object Model 진행사항
    21 이혜원 :   Monthly progress : Progress in developing TMA-OM and Xperanto-TMA

    　

    2 Febuary
    1 김옥구:   PhactaForm: 공유 eCRF 관리 웹사이트
    15 이혜원 :   Analysis method review of TMA data for querying Xperanto-TMA
    22 서화정 :   유방암센터 자료유형 분석 및 구조화된 임상문서의 구성 전략 II
    26 박유랑 :   Monthly progress : Implementation of Cancer Genomics Object Model

    　

    1 January
    4 이혜원:   Object model and database for tissue microarray
    11 김옥구 :   PhactaManager(임상시험자료관리시스템) 개발 현황
    18 박유랑 :   Cancer Genomics Object Model(2)
    25 서화정 :   유방암센터 자료유형 분석 및 구조화된 임상문서의 구성 전략
    22 김옥구 :   Monthly progress : PhactaManager(임상시험자료관리시스템) 개발 현황

    　

    2004

    12 December
    7 홍승권 :   Factors affercting the diffusion of EMR in hospital from a physician's perspective
    14 김세영 :   LegoDB: Customizing Relational Storage for XML Documents
    21 서화정 :   Works in progress - Clinical document generation & retrieval module (2)
    28 박유랑 :   First Step: An Object model for Oncology research using Microaray (MAGE/Onc – OM)
    13 홍승권 :   Monthly progress : Factors affercting the diffusion of EMR in hospital from a physician's perspective

    　

    11 November
    2 홍승권 :   Doctor-patient relationship in the era of e-health
    16 서화정 :   Works in progress - Clinical document generation & retrieval module (1)
    23 박유랑 :   Guideline and web application for Microarray Experiment in Oncogenomics
    30 김옥구 :   임상시험 자료 저장 구현
    15 서화정 :   Monthly progress : Intorduction of CDA related applications and works in progress

    　

    10 October
    12 김세영 :   Development of XML-based Clinical Document Generation Module
    12 서화정 :   Implementation of XML-based clinical document as standard for communication
    19 박유랑 :   Minimum Information About a Microarray Experiment for Oncology research (MIAME/Oncology)
    26 김옥구 :   The manuscript for the introduction of PhactaManager
    18 박유랑 :   Monthly progress : Integration of MAGE-OM and CDA

    　

    9 September
    6 서화정 :   Plan of Paper submission
    14 박유랑 :   INFOGENMED :
     A virtual laboratory for accessing and integrating genetic and medical information for health applications
    21 김옥구 :   전자 증례기록지에서의 SNP 입력 설계
    13 김옥구 :   Monthly progress : 임상시험 수행관리 시스템 : 분석, 설계 및 PhactaDesigner 개발

    　

    8 August
    9 　 Seo:   OCS와 BtoB연계방안 　
    16 　 Park:   An object model and database for biomedical informatics 　
    23 　 Okgu:   PhactaDesigner - eCRF design program 　
    30 　 Hong:   Social Factors Affecting Diffusion of the Telemedicine from a Physicians' Perspective 　
    17 　 Hong:  Monthly progress : Clinical decision making at the point-of-care 　

    　

    7 July
    5 　 Goo:   Design of eCRF entry module 　
    26 　 Hong:   원격진료 시행 시 도출될 사회, 문화적, 경제적 효과 　
    6 　 Lee:   Monthly progress : Mapping between the Disease Names of OMIM and MeSH 　

    　

    6  June
    7 　 Seo:   Evaluation Strategy of Clinical Document Prototype 　
    14 　 Hong:   Characteristics of GLIF3 　
    21 　 Lee:   A study of effective UMLS concept indexing in radiology reports 　
    park:   Integrating MAGE-OM and CDA using CDE
    28 　 Park:   Integrating MAGE-OM and CDA using CDE(Generating Template) 　
    8 　 Park:   Monthly progress : Integrating MAGE-OM and CDA using CDE(first step: generating HL7 Template) 　

    　

    5  May
    3 　 Seo:   Architecture of a clinical document based on the definition of section and specific instance 　
    10 　 Lee:   방사선과 보고서의 효율적인 UMLS concept indexing을 위한 연구(보완 및 결론, 계획) 　
    17 　 Hong:   Representing clinical guidelines in GLIF (Overview of GLIF) 　
    24 　 Park:   Integration of MAGE-OM and CDA - 1 (modeling CDA template for clinical data in microarray) 　
    31 　 Goo:   XML Schema design for CRF entry pages 　
    11 　 Hong:   Monthly progress : Privacy to the electronic medical record and telemedicine 　

    　

    4  April
    12 　 Park:   CDA Release 1.0 DTD Integration - second story 　
    19 　 Goo:   Introduction of e-Clinical Trial System 　
    13 　 Lee:   Monthly progress : Optimized UMLS vocabulary 　

    　

    3  March
    8 　 Park:   CDA Release 1.0 DTD Integration 　
    15 　 Seo:   Presenting of document constraints for structured discharge note 　
    22 　 Lee:   UMLS indexing 결과 보고 　
    29 　 Hong:   Representing clinical guidelines in GLIF 　
    16 　 Seo:   Monthly progress : Presenting of document constraints for structured discharge note 　

    　

    2  February
    2 　 Park:   Implementation CDE(common data element) in TrialDB 　
    9 　 Seo:   Generating CDA DTD using DTDGenerator tool 　
    11 　 Yoo:   HL7 Reference Information Model 　
    16 　 Lee:   UMLS indexing of test set 　
    23 　 BioEMR   Action Plan of CDMS Developemnt 　
    17 　 Park:   Monthly progress : Implementation plan for TrialDB 　

    　

    1  January
    5 　 Hong:   Review of Guideline 　
    12 　 Seo:   Relational data in XML (for clinical document processing) 　
    19 　 Lee:   Works in progress 　
    20 　 Hong:   Monthly progress : Clinical Guideline 　

    　

    2003

    12  December
    1 　 Hong:   Review of Guideline 　
    8 　 Seo:   Design of standardized XML DTD for exchange structured discharge note 　
    15 　 Lee:   연구 진행사항 　
    22 　 Park:   Review of caCORE 　
    23 　 Seo:   Monthly progress : Web-based Clinical Data Management System 　
    　 Lee:   Monthly progress : Optimized vocabulary DB 　

    　

    11  November
    3 　 Lee:   Arden Syntax Arden Syntax Spec
    　 Seo:   Schedule of CDA-based Data Structure design 　
    10 　 Park:   Clinical Trial Registry Systems 　
    17 　 Lee:   Manual indexing and programming 　
    　 Hong:   의료계의 New Paradigm 　
    24 　 Park:   Clinical Trial Registry Systems (review of TrialDB) 　
    25 　 Seo:   Monthly Progress 　

    　

    10  October
    6 　 Seo:   Design of CDA-based Data Structure 　
    　 Hong:   강남센터, 분당병원 charting 구조 분석 　
    13 　 Lee:   Mapping free text into UMLS concepts - Progress 　
    　 Park:   About NCI CDE(Common Data Element) 　
    27 　 Hong:   Critical Pathway 　
    28 　 Hong:   Monthly progress : Critical Pathway 　

    　

    9  September
    1 　 Lee:   Mapping free text into UMLS concepts 　
    15 　 Hong:   근골격계질환연구 chart의 예 　
    　 Park:   Cancer 　
    22 　 Seo:   Design of CDA-based CDMS schema - Clinical Information Table 　
    　 Lee:   Mapping free text into UMLS concepts 2 　
    29 　 Park:   Cancer Coding Standard ICD-O 　
    30 　 Seo:   Works in progress 　

    　

    8  August
    4 Design Objectives
    • Data modeling : CDA 표준에 대응하는 임상진료기록의 자료구조를 도출 / 데이터 베이스의 설계 및 구축
    • XML-based Clinical document generation : CDA 및 MAGE-OM표준에 대응하는 XML형태의 문서로 변환
    • User Interface : Data Entry, Display, Storage and Retrieval data
    • Data Integration : 암 역학정보 / 마이크로어레이 모델과의 통합
    Further Works
    • Hong : 강남센터, 분당병원 charting 구조 분석
    • Lee : Coding system의 활용 예
    • Park : 암역학 DB schema 설계
    • Seo : CDA-based Clinical inormation schema 설계
    11 　 Park: 역학 DB(CancerDB) schema 분석 CancerDB 설문지
    CancerDB 코호트 변수
    　 Seo: Stanford Univ.- TrailDB database schema 분석
    국립암센타 - 암검진 웹 인터페이스    		 Trial/DB developer's manual
    18 　 Hong: 강남센터, 분당병원 charting 구조 분석 　
    　 Lee: Coding system의 활용 예 　
    25 　 Seo: Design of CDA-based CDMS schema - Patient Data Table 　
    　 park: 다른 나라의 cancer DB 구축 사례- NCI caCORE I 　
    26 　 Seo: Monthly : Introduction to Clinical Informatics 　

    　

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