Park Ji Yeon
 
Ph.D student
Department of Cell Biology & Molecular Medicine
Graduate School of Biomedical Sciences (GSBS)
University of Medicine and Dentistry of New Jersey (UMDNJ)
Advisor: Bin Tian, Stephen F. Vatner
 
E-mail : parkji at umdnj.edu

 

Education

Ph.D student in Bioinformatics at University of Medicine and Dentistry of New Jersey, USA (2005-)
M.S. in Information processing at Sogang University, Seoul (2003)
M.S. in Genetics at Ewha Womans University, Seoul (1998)
B.S. in Biology Education at Ewha Womans University, Seoul (1995)

 

Work Experience

Researcher, National Institute of Toxicological Research, Korea Food and Drug Administration (NITR/KFDA) (2004-)
Researcher, Biomedical Informatics at Seoul National University (2002-2004)
Researcher, Molecular Genetics at Samsung Biomedical Research Institute (2000-2001)
Internship, Immunology at Korea Cancer Center Hospital (1998-1999)

 

Publication

Lee JY, Park JY, Tian B. Identification of mRNA polyadenylation sites in genomes using cDNA sequences, Expressed Sequence Tags, and Trace. Methods Mol Biol. 2008;419:23-37
Dass B, Tardif S, Park JY, Tian B, Weitlauf HM, Hess RA, Carnes K, Griswold MD, Small CL, Macdonald CC. Loss of polyadenylation protein CstF-64 causes spermatogenic defects and male infertility. Proc Natl Acad Sci U S A. 2007;104(51):20374-20379
Lee JY, Yeh I, Park JY, Tian B. PolyA_DB 2: mRNA polyadenylation sites in vertebrates genes, Nucleic Acids Res. 2007;35(Database issue):D165-D168
Yoon CY, Park M, Kim BH, Park JY, Park MS, Jeong YK, Kwon H, Jung HK, Kang H, Lee YS, Lee BJ. Gene Expression Profile by 2,3,7,8-Tetrachlorodibenzo-p-Dioxin in the Liver of Wild-Type (AhR+/+) and Aryl Hydrocarbon Receptor-Deficient (AhR-/-) Mice, J Vet Med Sci. 2006;68(7):663-668
Park JY, Park YR, Park CH, Kim J, Kim JH. Xperanto: a web-based integrated system for DNA microarray data management and analysis, Genomics and Informatics 2005;3(1): 39-42
Seo HJ, Hong SK, Park JY, Lee JA, Park YR, Kim SY, Kim JH. Presentation of Structural Constraints for Discharge Note According to Clinical Document Architecture Standard, J Kor Soc Med Informatics 2005;11(2):189-198
Park JY, Kim SY, Park YR, Seo HJ, Kim JH. Development of Microarray Gene Expression Database for MicroArray Gene Expression Markup Language, J Kor Soc Med Informatics 2004; 10(3): 347-353
Ki CS, Han SH, Kim HJ, Lee SG, Kim EJ, Kim JW, Choe YH, Seo JK, Chang YJ, Park JY. Mutation spectrum of the glucose-6-phosphatase gene and its implication in molecular diagnosis of Korean patients with glycogen storage disease type Ia, Clin Genet. 2004;65(6):487-489
Park YR, Park JY, Kim SY, Seo HJ, Lee JA, Kim JH. Integrating Microarray Gene Expression-Object Model and Clinical Document Architecture using Common Data Element, J Kor Soc Med Informatics 2004;10(Suppl 1):s41-s45
Park JY, Park YR, Park S, Kim JH. Database Design for Microarray Data Exchange Model MAGE-OM (Microarray Gene Expression-Object Model), J Kor Soc Med Informatics 2003; 9(3):227-234
Park JY, Park BJ, Kim JH. Database Design and Implementation of Microarray Gene Expression-Object Model, J Kor Soc Med Informatics 2003;9(Suppl 1):s50-s53

 

Research and Interests

Systematic analysis of microRNA and transcription factor in myogenesis, cardiogenesis, and cardiac hypertrophy
My goal is to uncover genetic regulatory modules of transcription factor and microRNA underlying distinct gene expression patterns of cardiac and skeletal muscles. (current)

Development of microarray database
With increasing efforts adopting standards for data sharing, I worked on establishing microarray database compliant to standards adopted by MGED (Microarray Gene Expression Data) society.

 
Microarray Data & Database
Microarray Standardization
My Research