목차

Jihun Kim

Contact


Jihun Kim, Ph.D.

Systems Biomedical Informatics National Core Research Center

Seoul National University Biomedical Informatics (SNUBI)

Seoul National University College of Medicine

28 Yongon-dong Chongno-gu Seoul 110-799, Korea

Curriculum Vitae

Academic preparation

Ph.D. in Biomedical Informatics 

Seoul National University Biomedical Informatics (SNUBI)
Seoul National University, 2008
Concentrations: Systems Biology, Functional Genomics
Thesis: Biological interpretation of microarray gene expression data using concept lattice
Advisor: Dr. Ju Han Kim, Dr. Kack-Kyun Kim

Ph.D. course in Biomedical Engineering 

Department of Biomedical Engineering, School
of Engineering, Chonbuk National University, 2000
Concentrations: Human Sensory Ergonomics
Coursework finished (Ready to Dissertation)

M.S. in Molecular and Cellular Physiology 

Faculty in Life Science, Pohang University
of Science and Technology (POSTECH), 1997
Concentrations: Cardiac Electrophysiology, Molecular Physiology
Thesis: Expression and distribution of cardiac alpha1 adrenergic receptor
Advisor: Dr. Chin Ok Lee

B.S. in Biochemistry 

Kyungbuk National University, 1995

Professional Experience

2012.04. - present  -- Chief Engineer, Macrogen
2010.10. - 2012.04.  -- Research Professor, Systems Biomedical Informatics 
                       National Core Research Center (SBI-NCRC, HealthAvatar Project),
                       Seoul National University Biomedical Informatics (SNUBI), 
                       Seoul National University
2008.11. - 2010.09. -- Senior Researcher, National Institute of Health Korea (KNIH)
2008.03. - 2008.10. -- Post Doctor, Seoul National University Biomedical Informatics (SNUBI),
                       Seoul National University
2001.12. - 2006.02. -- Researcher, Microbial Genome Center for Skin Infection
2000.03. - 2005.02. -- Assistant servant (Teaching & Administrative), 
                       Department of Oral Microbiology, School of Dentistry, 
                       Seoul National University
1997.03. - 1998.03. -- Assistant servant (Research & Administrative),
                       Department of Biomedical Engineering, School of Medicine, 
                       Chonbuk National University
1995.03. - 1997.02. -- Research Assistant, Faculty in Life Science, 
                       Pohang University of Science and Technology (POSTECH)

Biomedical Engineer certificated 

1st grade engineer, 1999.11.26. No: M100648
Korea Society of Medical & Biological Engineering

Publication List

Bi-directional semantic similarity for gene ontology to optimize biological and clinical analyses.
Bien SJ, Park CH, Shim HJ, Yang W, Kim J, Kim JH
J Am Med Inform Assoc19(5) p765-74 (2012 Sep 1) 10.1136/amiajnl-2011-000659

Standard-based Integration of Heterogeneous Large-scale DNA Microarray Data for Improving Reusability
Yong Jung, Hwa Jeong Seo, Yu Rang Park, Jihun Kim, Sang Jay Bien, Ju Han Kim. Genomics and Informatics 9(1), 19-27, 2011 PDF

Semantically enabled and statistically supported biological hypothesis testing with tissue microarray databases.
Song YS, Park CH, Chung HJ, Shin H, Kim J, Kim JH
BMC Bioinformatics12 Suppl 1() pS51 (2011 Feb 15) 10.1186/1471-2105-12-S1-S51

GOChase-II: correcting semantic inconsistencies from Gene Ontology-based annotations for gene products.
Park YR, Kim J, Lee HW, Yoon YJ, Kim JH
BMC Bioinformatics12 Suppl 1() pS40 (2011 Feb 15) 10.1186/1471-2105-12-S1-S40

Identifying set-wise differential co-expression in gene expression microarray data.
Cho SB, Kim J, Kim JH
BMC Bioinformatics10() p109 (2009 Apr 16) 10.1186/1471-2105-10-109

Biological Pathway Extension Using Microarray Gene Expression Data.
Chung TS, Kim J, Kim K, Kim JH. Genomics and Informatics 6(4), 202-209, 2008 PDF

BioLattice: a framework for the biological interpretation of microarray gene expression data using concept lattice analysis.
Kim J, Chung HJ, Jung Y, Kim KK, Kim JH
J Biomed Inform41(2) p232-41 (2008 Apr) 10.1016/j.jbi.2007.10.003

Genomic characterization of perturbation sensitivity.
Ohn JH, Kim J, Kim JH
Bioinformatics23(13) pi354-8 (2007 Jul 1) 10.1093/bioinformatics/btm172

The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes.
Cho NH, Kim HR, Lee JH, Kim SY, Kim J, Cha S, Kim SY, Darby AC, Fuxelius HH, Yin J, Kim JH, Kim J, Lee SJ, Koh YS, Jang WJ, Park KH, Andersson SG, Choi MS, Kim IS
Proc Natl Acad Sci U S A104(19) p7981-6 (2007 May 8) 10.1073/pnas.0611553104

Protein classification from protein-domain and gene-ontology annotation information using formal concept analysis.
Mi-Ryung Han, Hee-Joon Chung, Jihun Kim, Dong-Young Noh, Ju Han Kim LNCS 4488, 347-354, 2007
SpringerLink

GraPT: Genomic interpreteR About Predictive Toxicology.
Jung Hoon Woo, Yu Rang Park, Yong Jung, Jihun Kim, Ju Han Kim. Genomics and Informatics 4(3), 129-132, 2006 PDF

ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics.
Chung HJ, Park CH, Han MR, Lee S, Ohn JH, Kim J, Kim J, Kim JH
Nucleic Acids Res33(Web Server issue) pW621-6 (2005 Jul 1) 10.1093/nar/gki450

A Study on Visual and Auditory Emotion under Color and Music Stimuli.
Nam Kyun Kim, Jihun Kim, Chung Ki You. Korean journal of Biomedical Engineering 5(19), 539~546, 1998
KMbase