Gene expression profiling of murine hepatic steatosis induced by tamoxifen.
Lee MH, Kim JW, Kim JH, Kang KS, Kong G, Lee MO
Toxicol Lett() p (2010 Oct 19) 10.1016/j.toxlet.2010.10.008

Dexamethasone-Induced FKBP51 Expression in Peripheral Blood Mononuclear Cells Could Play a Role in Predicting the Response of Asthmatics to Treatment with Corticosteroids.
Chun E, Lee HS, Bang BR, Kim TW, Lee SH, Kim JH, Cho SH, Min KU, Kim YY, Park HW
J Clin Immunol() p (2010 Sep 18) 10.1007/s10875-010-9463-9

Histone deacetylase regulates high mobility group A2-targeting microRNAs in human cord blood-derived multipotent stem cell aging.
Lee S, Jung JW, Park SB, Roh K, Lee SY, Kim JH, Kang SK, Kang KS
Cell Mol Life Sci() p (2010 Jul 21) 10.1007/s00018-010-0457-9

Mixture-model based estimation of gene expression variance from public database improves identification of differentially expressed genes in small sized microarray data.
Kim M, Cho SB, Kim JH
Bioinformatics26(4) p486-92 (2010 Feb 15) 10.1093/bioinformatics/btp685

Identifying regulatory relationships among genomic loci, biological pathways, and disease.
Woo JH, Cho SB, Lee E, Kim JH
Artif Intell Med49(3) p161-5 (2010 Jul) 10.1016/j.artmed.2010.03.001

TMA-TAB: a spreadsheet-based document for exchange of tissue microarray data based on the tissue microarray-object model.
Song YS, Lee HW, Park YR, Kim do K, Sim J, Kang HP, Kim JH
J Biomed Inform43(3) p435-41 (2010 Jun) 10.1016/j.jbi.2009.10.001

Gene expression profiling of human gastrointestinal stromal tumors according to its malignant potential.
Hur K, Lee HJ, Woo JH, Kim JH, Yang HK
Dig Dis Sci55(9) p2561-7 (2010 Sep) 10.1007/s10620-009-1061-4

Achieving interoperability for metadata registries using comparative object modeling.
Park YR, Kim JH
Stud Health Technol Inform160(Pt 2) p1136-9 (2010)

Identifying set-wise differential co-expression in gene expression microarray data.
Cho SB, Kim J, Kim JH
BMC Bioinformatics10() p109 (2009 Apr 16) 10.1186/1471-2105-10-109

Comprehensive analysis of microRNA-mRNA co-expression in circadian rhythm.
Na YJ, Sung JH, Lee SC, Lee YJ, Choi YJ, Park WY, Shin HS, Kim JH
Exp Mol Med41(9) p638-47 (2009 Sep 30) 10.3858/emm.2009.41.9.070

Analysis of hepatic gene expression during fatty liver change due to chronic ethanol administration in mice.
Yin HQ, Je YT, Kim M, Kim JH, Kong G, Kang KS, Kim HL, Yoon BI, Lee MO, Lee BH
Toxicol Appl Pharmacol235(3) p312-20 (2009 Mar 15) 10.1016/j.taap.2008.12.018

The JNK-dependent CaMK pathway restrains the reversion of committed cells during osteoclast differentiation.
Chang EJ, Ha J, Huang H, Kim HJ, Woo JH, Lee Y, Lee ZH, Kim JH, Kim HH
J Cell Sci121(Pt 15) p2555-64 (2008 Aug 1) 10.1242/jcs.028217

Gene expression-based recurrence prediction of hepatitis B virus-related human hepatocellular carcinoma.
Woo HG, Park ES, Cheon JH, Kim JH, Lee JS, Park BJ, Kim W, Park SC, Chung YJ, Kim BG, Yoon JH, Lee HS, Kim CY, Yi NJ, Suh KS, Lee KU, Chu IS, Roskams T, Thorgeirsson SS, Kim YJ
Clin Cancer Res14(7) p2056-64 (2008 Apr 1) 10.1158/1078-0432.CCR-07-1473

Gene expression profiles of murine fatty liver induced by the administration of methotrexate.
Lee MH, Hong I, Kim M, Lee BH, Kim JH, Kang KS, Kim HL, Yoon BI, Chung H, Kong G, Lee MO
Toxicology249(1) p75-84 (2008 Jul 10) 10.1016/j.tox.2008.04.011

Cell cycle and immune-related processes are significantly altered in chronic GVHD.
Oh SJ, Cho SB, Park SH, Piao CZ, Kwon SM, Kim I, Yoon SS, Kim BK, Park EK, Kang JJ, Yang SJ, Lee WJ, Yoo CH, Hwang S, Kim SH, Kim JH, Park S
Bone Marrow Transplant41(12) p1047-57 (2008 Jun) 10.1038/bmt.2008.37

Time- and dose-based gene expression profiles produced by a bile-duct-damaging chemical, 4,4'-methylene dianiline, in mouse liver in an acute phase.
Kwon SB, Park JS, Yi JY, Hwang JW, Kim M, Lee MO, Lee BH, Kim HL, Kim JH, Chung H, Kong G, Kang KS, Yoon BI
Toxicol Pathol36(5) p660-73 (2008) 10.1177/0192623308320272

BioLattice: a framework for the biological interpretation of microarray gene expression data using concept lattice analysis.
Kim J, Chung HJ, Jung Y, Kim KK, Kim JH
J Biomed Inform41(2) p232-41 (2008 Apr) 10.1016/j.jbi.2007.10.003

Comprehensive analysis of time- and dose-dependent patterns of gene expression in a human mesenchymal stem cell line exposed to low-dose ionizing radiation.
Jin YW, Na YJ, Lee YJ, An S, Lee JE, Jung M, Kim H, Nam SY, Kim CS, Yang KH, Kim SU, Kim WK, Park WY, Yoo KY, Kim CS, Kim JH
Oncol Rep19(1) p135-44 (2008 Jan)

Gene expression profiling in human lung fibroblast following cadmium exposure.
Li GY, Kim M, Kim JH, Lee MO, Chung JH, Lee BH
Food Chem Toxicol46(3) p1131-7 (2008 Mar) 10.1016/j.fct.2007.11.007

Subchronic effects of valproic acid on gene expression profiles for lipid metabolism in mouse liver.
Lee MH, Kim M, Lee BH, Kim JH, Kang KS, Kim HL, Yoon BI, Chung H, Kong G, Lee MO
Toxicol Appl Pharmacol226(3) p271-84 (2008 Feb 1) 10.1016/j.taap.2007.09.014

Time- and dose-based gene expression profiles produced by a bile-duct-damaging chemical, 4,4'-methylene dianiline, in mouse liver in an acute phase.
Kwon SB, Park JS, Yi JY, Hwang JW, Kim M, Lee MO, Lee BH, Kim HL, Kim JH, Chung H, Kong G, Kang KS, Yoon BI
Toxicol Pathol36(5) p660-73 (2008) 10.1177/0192623308320272

Difference-based clustering of short time-course microarray data with replicates.
Kim J, Kim JH
BMC Bioinformatics8() p253 (2007 Jul 14) 10.1186/1471-2105-8-253

Genomic characterization of perturbation sensitivity.
Ohn JH, Kim J, Kim JH
Bioinformatics23(13) pi354-8 (2007 Jul 1) 10.1093/bioinformatics/btm172

Protein expression profiling and molecular classification of gastric cancer by the tissue array method.
Lee HS, Cho SB, Lee HE, Kim MA, Kim JH, Park do J, Kim JH, Yang HK, Lee BL, Kim WH
Clin Cancer Res13(14) p4154-63 (2007 Jul 15) 10.1158/1078-0432.CCR-07-0173

The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes.
Cho NH, Kim HR, Lee JH, Kim SY, Kim J, Cha S, Kim SY, Darby AC, Fuxelius HH, Yin J, Kim JH, Kim J, Lee SJ, Koh YS, Jang WJ, Park KH, Andersson SG, Choi MS, Kim IS
Proc Natl Acad Sci U S A104(19) p7981-6 (2007 May 8) 10.1073/pnas.0611553104

Cancer genomics object model: an object model for multiple functional genomics data for cancer research.
Park YR, Lee HW, Cho SB, Kim JH
Stud Health Technol Inform129(Pt 2) p1235-9 (2007)

Differential gene expression and lipid metabolism in fatty liver induced by acute ethanol treatment in mice.
Yin HQ, Kim M, Kim JH, Kong G, Kang KS, Kim HL, Yoon BI, Lee MO, Lee BH
Toxicol Appl Pharmacol223(3) p225-33 (2007 Sep 15) 10.1016/j.taap.2007.06.018

Gene expression profiles of murine fatty liver induced by the administration of valproic acid.
Lee MH, Hong I, Kim M, Lee BH, Kim JH, Kang KS, Kim HL, Yoon BI, Chung H, Kong G, Lee MO
Toxicol Appl Pharmacol220(1) p45-59 (2007 Apr 1) 10.1016/j.taap.2006.12.016

The tissue microarray object model: a data model for storage, analysis, and exchange of tissue microarray experimental data.
Lee HW, Park YR, Sim J, Park RW, Kim WH, Kim JH
Arch Pathol Lab Med130(7) p1004-13 (2006 Jul)

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies.
Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Rector TL, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner R, Kim JH, Short GF 3rd, Freeman MW, Seed B, Jensen R, Church GM, Hovig E, Cepko CL, Park P, Ohno-Machado L, Jenssen TK
Nat Biotechnol24(7) p832-40 (2006 Jul) 10.1038/nbt1217

Selection of neural differentiation-specific genes by comparing profiles of random differentiation.
Lee MS, Jun DH, Hwang CI, Park SS, Kang JJ, Park HS, Kim J, Kim JH, Seo JS, Park WY
Stem Cells24(8) p1946-55 (2006 Aug) 10.1634/stemcells.2005-0325

Evolution of an intronic microsatellite polymorphism in Toll-like receptor 2 among primates.
Yim JJ, Adams AA, Kim JH, Holland SM
Immunogenetics58(9) p740-5 (2006 Sep) 10.1007/s00251-006-0141-2

Comprehensive analysis of differential gene expression profiles on diclofenac-induced acute mouse liver injury and recovery.
Chung H, Kim HJ, Jang KS, Kim M, Yang J, Kim JH, Lee YS, Kong G
Toxicol Lett166(1) p77-87 (2006 Sep 30) 10.1016/j.toxlet.2006.05.016

Comprehensive analysis of differential gene expression profiles on D-galactosamine-induced acute mouse liver injury and regeneration.
Chung H, Kim HJ, Jang KS, Kim M, Yang J, Kang KS, Kim HL, Yoon BI, Lee MO, Lee BH, Kim JH, Lee YS, Kong G
Toxicology227(1-2) p136-44 (2006 Oct 3) 10.1016/j.tox.2006.07.026

Hepatic gene expression profiling and lipid homeostasis in mice exposed to steatogenic drug, tetracycline.
Yin HQ, Kim M, Kim JH, Kong G, Lee MO, Kang KS, Yoon BI, Kim HL, Lee BH
Toxicol Sci94(1) p206-16 (2006 Nov) 10.1093/toxsci/kfl078

The signature from messenger RNA expression profiling can predict lymph node metastasis with high accuracy for non-small cell lung cancer.
Choi N, Son DS, Lee J, Song IS, Kim KA, Park SH, Lim YS, Seo GJ, Han J, Kim H, Lee HW, Kang JJ, Seo JS, Kim JH, Kim J
J Thorac Oncol1(7) p622-8 (2006 Sep)

Defining structural constraints for the development of structured operation note for breast cancer based on Clinical Document Architecture.
Seo HJ, Youn ST, Hwang KT, Kim JH
AMIA Annu Symp Proc() p1089 (2006)

[Epidemiological aspects of dracunculosis in Benin. 2. Relationship between periodicity of worm eruptions and the origin of drinking water]
Chippaux JP, Massougbodji A
Bull Soc Pathol Exot84(4) p351-7 (1991)

ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics.
Chung HJ, Park CH, Han MR, Lee S, Ohn JH, Kim J, Kim J, Kim JH
Nucleic Acids Res33(Web Server issue) pW621-6 (2005 Jul 1) 10.1093/nar/gki450

() p ()

Design issues in toxicogenomics using DNA microarray experiment.
Lee KM, Kim JH, Kang D
Toxicol Appl Pharmacol207(2 Suppl) p200-8 (2005 Sep 1) 10.1016/j.taap.2005.01.045

Integrating microarray gene expression object model and clinical document architecture for cancer genomics research.
Park YR, Lee HW, Kim JH
AMIA Annu Symp Proc() p1073 (2005)

Discovering significant and interpretable patterns from multifactorial DNA microarray data with poor replication.
Kim JH, Jeoung D, Lee S, Kim H
J Biomed Inform37(4) p260-8 (2004 Aug) 10.1016/j.jbi.2004.07.011

ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics.
Chung HJ, Kim M, Park CH, Kim J, Kim JH
Nucleic Acids Res32(Web Server issue) pW460-4 (2004 Jul 1) 10.1093/nar/gkh476

Gene expression profiling of anti-GBM glomerulonephritis model: the role of NF-kappaB in immune complex kidney disease.
Kim JH, Ha IS, Hwang CI, Lee YJ, Kim J, Yang SH, Kim YS, Cao YA, Choi S, Park WY
Kidney Int66(5) p1826-37 (2004 Nov) 10.1111/j.1523-1755.2004.00956.x

Two-stage normalization using background intensities in cDNA microarray data.
Yoon D, Yi SG, Kim JH, Park T
BMC Bioinformatics5() p97 (2004 Jul 21) 10.1186/1471-2105-5-97

Increased expression of metallothionein is associated with irinotecan resistance in gastric cancer.
Chun JH, Kim HK, Kim E, Kim IH, Kim JH, Chang HJ, Choi IJ, Lim HS, Kim IJ, Kang HC, Park JH, Bae JM, Park JG
Cancer Res64(14) p4703-6 (2004 Jul 15) 10.1158/0008-5472.CAN-04-1063

ChromoViz: multimodal visualization of gene expression data onto chromosomes using scalable vector graphics.
Kim J, Chung HJ, Park CH, Park WY, Kim JH
Bioinformatics20(7) p1191-2 (2004 May 1) 10.1093/bioinformatics/bth052

DNA microarray analysis of the correlation between gene expression patterns and acquired resistance to 5-FU/cisplatin in gastric cancer.
Kim HK, Choi IJ, Kim HS, Kim JH, Kim E, Park IS, Chun JH, Kim IH, Kim IJ, Kang HC, Park JH, Bae JM, Lee JS, Park JG
Biochem Biophys Res Commun316(3) p781-9 (2004 Apr 9) 10.1016/j.bbrc.2004.02.109

Polymorphisms in the estrogen receptor-alpha gene and breast cancer risk.
Kang HJ, Kim SW, Kim HJ, Ahn SJ, Bae JY, Park SK, Kang D, Hirvonen A, Choe KJ, Noh DY
Cancer Lett178(2) p175-80 (2002 Apr 25)

Social network analysis of gene expression data.
Ohn JH, Kim J, Kim JH
AMIA Annu Symp Proc() p958 (2003)

Bioinformatics and genomic medicine.
Kim JH
Genet Med4(6 Suppl) p62S-65S (2002 Nov-Dec) 10.1097/01.GIM.0000041505.96252.86

Identification of radiation-specific responses from gene expression profile.
Park WY, Hwang CI, Im CN, Kang MJ, Woo JH, Kim JH, Kim YS, Kim JH, Kim H, Kim KA, Yu HJ, Lee SJ, Lee YS, Seo JS
Oncogene21(55) p8521-8 (2002 Dec 5) 10.1038/sj.onc.1205977

Visualization and evaluation of clusters for exploratory analysis of gene expression data.
Kim JH, Kohane IS, Ohno-Machado L
J Biomed Inform35(1) p25-36 (2002 Feb)

XRCC1 genetic polymorphism and breast cancer risk.
Kim SU, Park SK, Yoo KY, Yoon KS, Choi JY, Seo JS, Park WY, Kim JH, Noh DY, Ahn SH, Choe KJ, Strickland PT, Hirvonen A, Kang D
Pharmacogenetics12(4) p335-8 (2002 Jun)

Functional catechol-O-methyltransferase gene polymorphism and susceptibility to schizophrenia.
Park TW, Yoon KS, Kim JH, Park WY, Hirvonen A, Kang D
Eur Neuropsychopharmacol12(4) p299-303 (2002 Aug)

A telemedicine system as a care modality for dementia patients in Korea.
Lee JH, Kim JH, Jhoo JH, Lee KU, Kim KW, Lee DY, Woo JI
Alzheimer Dis Assoc Disord14(2) p94-101 (2000 Apr-Jun)

A web-based rapid prototyping and clinical conversational system that complements electronic patient record system.
Kim JH, Ferziger R, Kawaloff HB, Sands DZ, Safran C, Slack WV
Stud Health Technol Inform84(Pt 1) p628-32 (2001)

Unsupervised learning from complex data: the matrix incision tree algorithm.
Kim JH, Ohno-Machado L, Kohane IS
Pac Symp Biocomput() p30-41 (2001)

A telemedicine system as a care modality for dementia patients in Korea.
Lee JH, Kim JH, Jhoo JH, Lee KU, Kim KW, Lee DY, Woo JI
Alzheimer Dis Assoc Disord14(2) p94-101 (2000 Apr-Jun)

Human cloning and the digital revolution.
Kim JH
MD Comput15(4) p215-6 (1998 Jul-Aug)

Migrating towards a client server architecture: a successful application in a 2,200-bed general hospital.
Lee JS, Min WK, Kim JH
Stud Health Technol Inform52 Pt 2() p927-30 (1998)

Age of onset and brain atrophy in Alzheimer's disease.
Woo JI, Kim JH, Lee JH
Int Psychogeriatr9(2) p183-96 (1997 Jun)