Microarray Informatics Team

Date
Weekly meeting : every Wednesday 09:00 A.M.
Members: 정태수, 조성범, 한미령, 나영지, 우정훈, 이혜원(helper), 윤혜성(helper)...
Biocandi Module 정리
Seminar
Date(2006 ) Title Presenter
Date(5월 ) Title Presenter
2006-05-26 TBA 한미령
2006-05-19 GAW data analysis 우정훈
2006-05-12 Mantel test with pathway gene set II 조성범
Date(4월 ) Title Presenter
2006-04-28 Differential co-expression patterns between normal and tumor samples 정태수
2006-04-21 Replicate of Zhou's result 나영지
2006-04-14 Analysis plan for "Genetic Analysis Workshop" data. 우정훈
2006-04-07 cDNA microarray & Proteomics 한미령
Date(3월 ) Title Presenter
2006-03-31 Selection of gene subset with MDR algorithm in Mantel test 조성범
2006-03-24 Prediction of microbial infection 정태수
2006-03-17 Meta Analysis of Microarray 나영지
2006-03-10 Chicken PGC data analysis 우정훈
Date(2월 ) Title Presenter
2006-02-22 Mantel test with gene set 조성범
2006-02-22 Breast_MCF7 analysis progress 한미령
2006-02-08 CCD data primary analysis 나영지
2006-02-08 Order-preserving patterns in normal and tumor samples 정태수
2006-02-01 Analysis of Human Cancer Microarray Data with Clinical Information; application of Mantel statistics with combination of clinical variables 조성범
2006-02-01 Cancer Stem Cells 한미령
Date(1월 ) Title Presenter
2006-01-25 Order-preserving patterns in normal and tumor samples 정태수
2006-01-25 RA/OA data analysis (part 2) 우정훈
2006-01-18 CCD Data Analysis 나영지
2006-01-18 RA/OA data analysis 우정훈
2006-01-11 Microarray data analysis of human cancers with clinical information; application of Mantel statistics 조성범
2006-01-11 Order-preserving patterns in normal and tumor samples 정태수
2006-01-04 Breast AB chip analysis 한미령
2006-01-04 BMT Data Analysis Strategy 나영지
Date(2005 ) Title Presenter
Date(12월 ) Title Presenter
2005-12-28 학위 논문 정리-supplementary site 정리 김미현
2005-12-28 mesenchymal stem cell 분석 진행상황 우정훈
2005-12-21 Microarray data analysis of human cancers with clinical stage information 조성범
2005-12-21 Gene set having different sequence patterns 정태수
2005-12-14 From signatures to models 나영지
2005-12-14 Autism aCGH data analysis using CGH-Explorer 한미령
2005-12-07 Evaluation of matrix factorization methods for the analysis of DNA microarray gene expression data 김미현
2005-12-07 Comparison between Affy and ABI chip 우정훈
Date(11월 ) Title Presenter
2005-11-30 Comparison of gene expression profiling between different clinical stages 조성범
2005-11-23 Combining microarray and genetic analysis 나영지
2005-11-23 matrix factorizaiton method validation 정리 김미현
2005-11-16 Autism aCGH data analysis using Biocandi 한미령
2005-11-09 Problem solving in GIST data 우정훈
2005-11-09 Pathway-based microarray analysis; results with different data sets 조성범
2005-11-02 Genetical Genomics 나영지
2005-11-02 Detection of microbial infection in cultured cells on the basis of mollecular profiling of host responses 정태수
Date(10월 ) Title Presenter
2005-10-26 Comparison of matrix factorization and clustering methods 김미현
2005-10-26 Autism arrayCGH data 한미령
2005-10-19 Microarray analysis with multple pathways 조성범
2005-10-19 Progress of GIST data analysis 우정훈
2005-10-12 Detection of infection in Cultured Cells 정태수
2005-10-05 NMF with sparseness constraints 김미현
2005-10-05 GIST data analysis 우정훈
Date(9월 ) Title Presenter
2005-09-28 Tumor microarray classification using clinical information 조성범
2005-09-28 ArrayCyGHt:a web application for analysis and visualization of array-CGH data 한미령
2005-09-21 Rrquired functions in Xperanto-BioCanDI 정태수
2005-09-21 TBA 우정훈
2005-09-14 Codelink chip microarray analysis 나영지
2005-09-14 BioCANDI progress 전원
2005-09-07 BioCANDI module 보완 -DEDS, ICA, PCA 김미현
2005-09-07 BioCANDI progress 전원
Date(8월 ) Title Presenter
2005-08-31 GSEA & Naive Bayes 조성범
2005-08-31 aCGH_GLAD for Biocandi 한미령
2005-08-24 Significant genes in GIST data 정태수
2005-08-17 Analysis plan of toxicant related data 우정훈
2005-08-17 Application of matrix factorization to microarray data analysis 김미현
2005-08-10 Radiation Data Analysis - Time dependent 나영지
2005-08-10 Required Analysis Modules in BioCANDI 정태수
2005-08-03 Plan for knowledge based microarray analysis 조성범
2005-08-03 Progress in BioCANDI 정태수
Date(7월 ) Title Presenter
2005-07-27 aCGH analysis review 한미령
2005-07-20 Review of Matrix Factorization 김미현
2005-07-20 Summary of Radiation Data Analysis 나영지
2005-07-13 Pathway based tumor classification 조성범
2005-07-13 Review of matrix factorization (ISMB 논문 review) 김미현
2005-07-06 SKY/M-FISH and CGH Database 한미령
2005-07-06 Significant genes in detecting mycoplasma infection of cell 정태수
Date(6월 ) Title Presenter
2005-06-29 Macrogen Oligo, ABI, Affymetrix chip 비교 이영주
2005-06-22 Understanding to the complicated biological responses to IR 나영지
2005-06-22 Microarray Analysis using Prior Biologic Knowledge 조?lt;/TD>
2005-06-15 Analysis of Mycopasma infection data 정태수
2005-06-15 Protein classification from protein-domain and gene-ontology annotation information using formal concept analysis 한미령
2005-06-08 Review of ICA for classification and its application 김미현
2005-06-08 GIST(위장관 간질 종양) chip 실험 이영주
2005-06-01 가톨릭대 글리벡 데이터 분석 이수연
Date(5월 ) Title Presenter
2005-05-25 DEDS in xperanto 진행상황 김미현
2005-05-25 Affymetrix Arrays: Diagnostic and Analysis Tools 나영지
2005-05-18 BioCANDI2 in Xperanto 정태수
2005-05-11 Outline of Radiation Data Report 나영지
2005-05-04 The Detection of Outlier Cases with Deviation of Logistic Regression Analysis 조성범
2005-05-04 MycoplasmaKFDA: 감염지표유전자집합 선정 및 민감도 테스트 정태수
Date(4월 ) Title Presenter
2005-04-27 Breast Cancer Array CGH analysis review 한미령
2005-04-27 ETRI data 분석 plan 김미현
2005-04-27 글리벡 저항 임파선암 세포주 ABI chip 실험 이영주
2005-04-20 ENU 데이터 분석 이수연
2005-04-13 Comparison of Statistical Methods in Replicated Microarray Profiles 나영지
2005-04-13 Analysis of microarray data of lung and cervical cancer 조성범
2005-04-06 Mycoplasma data 분석 정태수
2005-04-06 Analysis of breast cancer arrayCGH data 한미령
Date(3월 ) Title Presenter
2005-03-30 Progress in lung cancer data analysis 김미현
2005-03-30 CRF rat chip clustering 분석 결과 이영주
2005-03-23 ABI chip 분석 진행 상황 (2-way ANOVA 이용한 Gene Filtering작업) 이수연
2005-03-23 Secondary Analysis of Radiation Data 나영지
2005-03-16 The Analysis of cervical cancer microarray data -II 조성범
2005-03-16 Complete report templete for microarray data analysis 정태수
2005-03-09 Array CGH data analysis using CGH-Miner 한미령
2005-03-09 Analysis of Lung cancer data using ICA 김미현
2005-03-02 CRF rat chip 분석 이영주
2005-03-02 AB microarray 분석(2) 이수연
Date(2월 ) Title Presenter
2005-02-25 Analysis of B10 by Radiation Exposure 나영지
2005-02-16 Analysis of Cervix Cancer Microarray Data 조성범
2005-02-16 Report form of Microarray data analysis 정태수
2005-02-02 Analysis of Lung cancer data using ICA 김미현
2005-02-02 Breast cancer aCGH data의 문제점 & Normalization 한미령
Date(1월 ) Title Presenter
2005-01-26 CRF rat chip 분석 이영주
2005-01-26 AB microarray 분석 이수연
2005-01-19 Processes of Microarray data analysis 정태수
2005-01-19 Progress in analysis of lung cancer data Using ICA 김미현
2005-01-12 Analysis of arrayCGH breast cancer data 한미령
2005-01-12 Discover emerging patterns in multi-source data 윤혜성
2005-01-05 Ontologizer Review 이수연
Date(2004 ) Title Presenter
Date(12월 ) Title Presenter
2004-12-29 [ICAforMicroarray]ICA of lung cancer data 김미현
2004-12-22 [PathPlus-human] 정태수
2004-12-22 Feature selection and Multiclass analysis 윤혜성
2004-12-15 Analysis of arrayCGH breast cancer data using GLAD 한미령
2004-12-15 Normalization이후 microarray 데이터 분석 이수연
2004-12-08 [Myco] DNA Microarray를 이용한 세포기질 평가 정태수
2004-12-08 [ICAformicroarray] Application of ICA 김미현
2004-12-01 [TMA] Relational database for tissue microarray 이혜원
2004-12-01 Antidepressant를 투여한 cDNA mouse data 분석 한미령
Date(11월 ) Title Presenter
2004-11-24 Data analysis using Weka 윤혜성
2004-11-24 Comparison of labeling methods for Microarray experiments 이영주
2004-11-17 Research plan 이수연
2004-11-17 Application of ICA for microarray data analysis 김미현
2004-11-10 Analysis using FDR 이석호
2004-11-10 [DNA Microarray를 이용한 세포誰?평가] 의 분석방법 고찰 정태수
2004-11-03 Molecular Profiling of Clinical Features in Breast Cancer Using Principal Component Analysis 한미령
2004-11-03 An object model and database for tissue microarray 이혜원
Date(10월 ) Title Presenter
2004-10-20 Linking and Combined Analysis Method based on Information Quantity of Multi-source Data 윤혜성
2004-10-20 Micorarray Experiment 이영주
2004-10-13 A genetic Approach for Gene Selection on Microarray Expression data 이수연
2004-10-13 An object model for tissue microarray : comparison with DNA microarray 이혜원
2004-10-06 ICA to analyze microarray data 김미현
2004-10-06 Microarray expression data reflect the pathway knowledge 정태수
Date(9월 ) Title Presenter
2004-09-22 Survival analysis of Breast cancer 한미령
2004-09-22 Lung Cancer Analysis 이석호
2004-09-15 Microarray Informatics : START 이??lt;/TD>
2004-09-01 Data Integration and Analysis Method based on Information Quantity of Multi-Source Data 윤혜성
2004-09-01 [PathPlus] Performance index of prediction for pathway 정태수
Date(8월 ) Title Presenter
2004-08-25 Survival data analysis using microarray cancer data 이??lt;/TD>
2004-08-25 PathPlus 김기원
2004-08-18 PLS method in cancer data analysis 김미현
2004-08-18 Methods in Lung Cancer Data Analysis 이혜원
2004-08-11 PCA analysis of Breast cancer data 한미령
2004-08-11 Multi-Source Data Integration and Analysis 윤혜성
Date(7월 ) Title Presenter
2004-07-21 microarray data preprocessing 김기원
2004-07-21 PathPlus 정태수
2004-07-14 Data Analysis - Radiation Data 이혜원
2004-07-14 Bioconductor Basics 김지훈
2004-07-07 6월에 한일/7월의 계획 발표 전원
2004-07-07 Validation of Associations by Permutation Testing 한미령
Date(6월 ) Title Presenter
2004-06-30 Normalization for cDNA microarray data 김미현
2004-06-30 Scanalyze & Data preprocessing 김기원
2004-06-23 Microarray image acquisition and analysis 이혜원
2004-06-23 Integration Rules Extraction Using Multi-source Data 윤혜성
2004-06-16 27 ER(-) breast cancers with/without recurrence 한미령
2004-06-16 How to add microarray data to PathPlus 김기원
2004-06-09 Big Picture of PathPlus 정태수
2004-06-09 DIB-C 김지훈
2004-06-02 5월에 한일/ 6월의 계획 발표 전체
2004-06-02 Permutation test in lung cancer data 이혜원
Date( 5월 ) Title Presenter
2004-05-19 Combining Distributed Data Mining and Semi-supervised Learning Using Social Network and Association Algorithm Technique 윤혜성
2004-05-19 Difference-Based Clustering of Time Series Data 김지훈
2004-05-12 Plan to extend human pathway 정태수
2004-05-12 Micorarray result validation 김기원
Date( 4월 ) Title Presenter
2004-04-28 4월에 한일/5.6월의 계획 발표 전체
2004-04-28 Factor analysis on stage I lung cancer data 이혜원
2004-04-21 Lung cancer data 분석 김혜진
2004-04-21 파킨슨 data 분석 윤혜성
2004-04-14 Analysis of responsive genes after Low-Dose Ionizing Radiation Using Evolutionary Algorithm 김지훈
2004-04-14 Identifying Biological themes Within lists of genes 박지연
2004-04-07 PathPlus 정태수
2004-04-07 Breast cancer analysis using BRB array tool 한미령
Date( 3월 ) Title Presenter
2004-03-31 Lung cancer data 분석 김혜진
2004-03-31 파킨슨 논문 발표(서울?의학박사 학위 논문) 윤혜성
2004-03-24 Analysis of Radiation data 이혜원
2004-03-24 Monitoring Low Radiation dose by Gene Expression Profiling 박지연
2004-03-17 Pathway Extension through genome society information 김기원
2004-03-10 Extraction and validation of pathway structure from Yeast genome society 정태수
2004-03-10 Analyzing the microarray experiment with the factorial design 김지훈(H)
2004-03-04 Finding classfier genes using expression and clinical data in breast cancer 한미령
2004-03-04 Review for MPTP Mice Model papers of Parkinson's Disease 윤혜성
Date( 2월 ) Title Presenter
2004-02-26 Finding classfier genes using expression and clinical data in lung cancer 이혜원
2004-02-26 ES Cell Differentiation 김지훈(H)
2004-02-24 Monthly report 정태수
2004-02-19 Simulation study to measure cyclicity in microarray expression profile 김지훈(J)
2004-02-19 Finding classfier genes using expression and clinical data in lung cancer 이혜원
2004-02-12 Analysis of variance in thyroid microarray data 박지연
2004-02-12 Preprocessing parkinson data 윤혜성
2004-02-05 Network topology of significant patterns in multi-factorial microarray experiments 정태수
2004-02-05 Pattern recognition using the time series data 김지훈 (H)
Date( 1월 ) Title Presenter
2004-01-29 Preprocessing cell-cycle microarray data using PERL 김지훈 (J)
2004-01-29 Preprocessing breast cancer data 한미령
2004-01-27 Monthly report 김지훈 (J)
Date(2003) Title Presenter
2003-12-04 What should I make bed? T.T 김지훈 (J)
2003-11-27 Microarray Data Analysis in Rat Thyroid 박지연
2003-11-27 The Neuronal Differentiation in Mouse Embroynic Stemcell 김지훈 (H)
2003-11-27 DataSharing Whole Day Meeting: stemcell 김지훈 (H)
2003-11-27 Stanford Breast Cancer Microarray Data 한미령
2003-11-27 Data processing of Lung Cancer Data 이혜원
2003-11-27 Analysis of Gastric data 정태수
2003-11-13 Preparing DataSharing Whole Day Meeting 김지훈 (H)
2003-11-06 Review of BRB ArrayTools 이혜원
2003-10-30 Problems connected with heterogeneous data type analysis 윤혜성
2003-10-30 Using ‘gene effect’ to identify periodical genes 김지훈 (J)
2003-10-16 Molecular profiles of invasive mucinous and ductal carcinoma of the breast cancer 한미령
2003-10-16 Expression profiles of non-small cell lung cancers on cDNA microarray : Identification of genes for prediction of lymph-node metastasis and sensitivity to anti-cancer drugs 이혜원
2003-10-09 GRIP에서의 SNP data 박찬희
2003-10-09 Understanding Stanford Lung Cancer Dataset 박지연
2003-10-02 Gemone-wide analysis relatiing expression level with protein subcelluler localization 김지훈(J)
2003-10-02 Social Network Application 윤혜성
2003-09-25 Core group of gastric cancers 정태수
2003-09-25 Breast and Ovarian Cancer 한미령
2003-09-04 Introduction to Survival Analysis 김지훈(H)
2003-09-04 Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses 이혜원
2003-08-28 Meta-analysis of microarray data in lung cancer 박지연
2003-08-21 Multiclassifier Systems - Combining Classifiers 윤혜성
2003-08-14 Bio-Perl 한미령
2003-08-07 cDNA Microarray Analysis of Gene Expression in Pathologic Stage 1A Nonsmall Cell Lung Carcinomas 이혜원


Affy resources

Reference
Date Reference File
2003-11-24 Huber(2002)_bioinfo.pdf
2003-11-24 Leung(2003)_tr.in.genet.pdf
2003-11-24 Newton(2001)_jcb.pdf
2003-11-24 Yang(2001)_Berkeley.tec.rep.pdf