| category | Clusters, Significantly overrepresented terms
BC : BioCarta term, GM : GenMAPP term, KG : KEGG term, PG : PharmGKB term |
| core |
cluster 22, 26, 43 BC_AKAP95_role_in_mitosis_and_chromosome_dynamics BC_Activation_of_Src_by_Protein_tyrosine_phosphatase_alpha BC_Apoptotic_DNA_fragmentation_and_tissue_homeostasis BC_Cell_Cycle_G1_S_Check_Point BC_Cell_Cycle_G2_M_Checkpoint BC_Cyclins_and_Cell_Cycle_Regulation BC_Estrogen_responsive_protein_Efp_controls_cell_cycle_and_breast_tumors_growth BC_How_Progesterone_Initiates_the_Oocyte_Maturation BC_Protein_Kinase_A_at_the_Centrosome BC_RB_Tumor_Suppressor_Checkpoint_Signaling_in_response_to_DNA_damage BC_Role_of_Ran_in_mitotic_spindle_regulation BC_Sonic_Hedgehog_SHH_Receptor_Ptc1_Regulates_cell_cycle BC_Sonic_Hedgehog_Shh_Pathway BC_Stathmin_and_breast_cancer_resistance_to_antimicrotubule_agents BC_cdc25_and_chk1_Regulatory_Pathway_in_response_to_DNA_damage GM_Cell_Cycle |
| communicating |
cluster 24, 28, 46, 57, 60, 93, 96 BC_Activation_of_Csk_by_cAMP_dependent_Protein_Kinase_Inhibits_Signaling_through_the_T_Cell_Receptor BC_Activation_of_cAMP_dependent_protein_kinase_PKA BC_Attenuation_of_GPCR_Signaling BC_CD40L_Signaling_Pathway BC_CDK_Regulation_of_DNA_Replication BC_ChREBP_regulation_by_carbohydrates_and_cAMP BC_Cycling_of_Ran_in_nucleocytoplasmic_transport BC_Cystic_fibrosis_transmembrane_conductance_regulator_and_beta_2_adrenergic_receptor_pathway BC_Effects_of_calcineurin_in_Keratinocyte_Differentiation BC_Hypoxia_and_p53_in_the_Cardiovascular_system BC_IL12_and_Stat4_Dependent_Signaling_Pathway_in_Th1_Development BC_Mechanism_of_Gene_Regulation_by_Peroxisome_Proliferators_via_PPARa_alpha_ BC_Mechanism_of_Protein_Import_into_the_Nucleus BC_Neuropeptides_VIP_and_PACAP_inhibit_the_apoptosis_of_activated_T_cells BC_Nitric_Oxide_Signaling_Pathway BC_Overview_of_telomerase_protein_component_gene_hTert_Transcriptional_Regulation BC_Phospholipase_C_epsilon_pathway BC_Regulation_of_BAD_phosphorylation BC_Regulation_of_ck1_cdk5_by_type_1_glutamate_receptors BC_Repression_of_Pain_Sensation_by_the_Transcriptional_Regulator_DREAM BC_Sumoylation_by_RanBP2_Regulates_Transcriptional_Repression BC_TACI_and_BCMA_stimulation_of_B_cell_immune_responses BC_TNFR2_Signaling_Pathway BC_The_reactions_that_feed_amino_groups_into_the_urea_cycle BC_Transcription_Regulation_by_Methyltransferase_of_CARM1 BC_Transcription_factor_CREB_and_its_extracellular_signals GM_Fatty_Acid_Synthesis GM_S1P_Signaling KG_Alanine_and_aspartate_metabolism KG_Arginine_and_proline_metabolism KG_Glutamate_metabolism |
| peripheral |
cluster 1, 11, 13, 18, 25, 27, 30, 37, 40, 41, 44, 50, 55, 58, 63, 69, 70, 71, 73, 74, 77, 80, 83, 84, 86, 90, 92, 94, 98, 99 BC_ATM_Signaling_Pathway BC_Acetylation_and_Deacetylation_of_RelA_in_The_Nucleus BC_Actions_of_Nitric_Oxide_in_the_Heart BC_Acute_Myocardial_Infarction BC_Angiotensin_II_mediated_activation_of_JNK_Pathway_via_Pyk2_dependent_signaling BC_Angiotensin_converting_enzyme_2_regulates_heart_function BC_Aspirin_Blocks_Signaling_Pathway_Involved_in_Platelet_Activation BC_BCR_Signaling_Pathway BC_BTG_family_proteins_and_cell_cycle_regulation BC_B_Cell_Survival_Pathway BC_Bioactive_Peptide_Induced_Signaling_Pathway BC_Biosynthesis_of_isoleucine BC_Biosynthesis_of_leucine BC_Biosynthesis_of_valine BC_CARM1_and_Regulation_of_the_Estrogen_Receptor BC_CXCR4_Signaling_Pathway BC_Caspase_Cascade_in_Apoptosis BC_Ceramide_Signaling_Pathway BC_Chaperones_modulate_interferon_Signaling_Pathway BC_Corticosteroids_and_cardioprotection BC_D4_GDI_Signaling_Pathway BC_Dicer_Pathway BC_Double_Stranded_RNA_Induced_Gene_Expression BC_EGF_Signaling_Pathway BC_EPO_Signaling_Pathway BC_Eph_Kinases_and_ephrins_support_platelet_aggregation BC_Erk1_Erk2_Mapk_Signaling_pathway BC_Erk_and_PI_3_Kinase_Are_Necessary_for_Collagen_Binding_in_Corneal_Epithelia BC_FAS_signaling_pathway_CD95 BC_Fc_Epsilon_Receptor_I_Signaling_in_Mast_Cells BC_GATA3_participate_in_activating_the_Th2_cytokine_genes_expression BC_HIV_1_defeats_host_mediated_resistance_by_CEM15 BC_HIV_I_Nef_negative_effector_of_Fas_and_TNF BC_IFN_gamma_signaling_pathway BC_IGF_1_Signaling_Pathway BC_IL_2_signaling_pathway BC_IL_7_Signal_Transduction BC_Induction_of_apoptosis_through_DR3_and_DR4_5_Death_Receptors BC_Influence_of_Ras_and_Rho_proteins_on_G1_to_S_Transition BC_Inhibition_of_Cellular_Proliferation_by_Gleevec BC_Insulin_Signaling_Pathway BC_Integrin_Signaling_Pathway BC_Intrinsic_Prothrombin_Activation_Pathway BC_Keratinocyte_Differentiation BC_Leloir_pathway_of_galactose_metabolism BC_Links_between_Pyk2_and_Map_Kinases BC_MAPKinase_Signaling_Pathway BC_Metabolism_of_Anandamide_an_Endogenous_Cannabinoid BC_NFAT_and_Hypertrophy_of_the_heart_Transcription_in_the_broken_heart_ BC_NF_kB_Signaling_Pathway BC_Nerve_growth_factor_pathway_NGF_ BC_PDGF_Signaling_Pathway BC_Pertussis_toxin_insensitive_CCR5_Signaling_in_Macrophage BC_Phosphorylation_of_MEK1_by_cdk5_p35_down_regulates_the_MAP_kinase_pathway_ BC_Platelet_Amyloid_Precursor_Protein_Pathway BC_Ras_Signaling_Pathway BC_Regulators_of_Bone_Mineralization BC_Role_of_BRCA1_BRCA2_and_ATR_in_Cancer_Susceptibility BC_Role_of_EGF_Receptor_Transactivation_by_GPCRs_in_Cardiac_Hypertrophy BC_Role_of_MAL_in_Rho_Mediated_Activation_of_SRF BC_Role_of_Mitochondria_in_Apoptotic_Signaling BC_SODD_TNFR1_Signaling_Pathway BC_SREBP_control_of_lipid_synthesis BC_Selective_expression_of_chemokine_receptors_during_T_cell_polarization BC_Signal_transduction_through_IL1R BC_Signaling_Pathway_from_G_Protein_Families BC_Signaling_of_Hepatocyte_Growth_Factor_Receptor BC_Sprouty_regulation_of_tyrosine_kinase_signals BC_TNFR1_Signaling_Pathway BC_TNF_Stress_Related_Signaling BC_TSP_1_Induced_Apoptosis_in_Microvascular_Endothelial_Cell BC_T_Cell_Receptor_Signaling_Pathway BC_Th1_Th2_Differentiation BC_The_4_1BB_dependent_immune_response BC_The_PRC2_Complex_sets_Long_term_gene_Silencing_The_Modification_of_Histone_Tails BC_Toll_Like_Receptor_Pathway BC_Trka_Receptor_Signaling_Pathway BC_Vitamin_C_in_the_Brain BC_West_Nile_Virus BC_Wnt_LRP6_Signalling BC_fMLP_induced_chemokine_gene_expression_in_HMC_1_cells BC_mCalpain_and_friends_in_Cell_motility BC_p38_MAPK_Signaling_Pathway BC_p53_Signaling_Pathway BC_uCalpain_and_friends_in_Cell_spread GM_Apoptosis GM_Blood_Clotting_Cascade GM_Cholesterol_Biosynthesis GM_Complement_Activation_Classical GM_Fatty_Acid_Degradation GM_G13_Signaling_Pathway GM_GPCRs_Class_C_Metabotropic_glutamate_pheromone GM_Glycogen_Metabolism GM_Inflammatory_Response_Pathway GM_MAPK_Cascade GM_Nucleotide_Metabolism GM_Ovarian_Infertility_Genes GM_Translation_Factors GM_tRNA_Synthetases KG_Fatty_acid_biosynthesis_path_1 KG_Inositol_phosphate_metabolism KG_Methane_metabolism KG_Methionine_metabolism KG_Nicotinate_and_nicotinamide_metabolism KG_Nitrogen_metabolism KG_Selenoamino_acid_metabolism KG_Sphingoglycolipid_metabolism KG_Sphingophospholipid_biosynthesis KG_Terpenoid_biosynthesis KG_Valine_leucine_and_isoleucine_degradation PG_Glucocorticoid_and_Inflammatory_genes_Pathway_Gene_Regulation PG_Glucocorticoid_and_Inflammatory_genes_Pathway_PD |
| independent |
cluster 5, 7, 10, 12, 15, 29, 31, 32, 36, 48, 53, 56, 59, 64, 66, 72, 75, 78, 81, 100 BC_Biosynthesis_of_Cysteine_in_mammals BC_Biosynthesis_of_threonine_and_methionine BC_Catabolic_Pathways_for_Methionine_Isoleucine_Threonine_and_Valine BC_Control_of_Gene_Expression_by_Vitamin_D_Receptor BC_Endocytotic_role_of_NDK_Phosphins_and_Dynamin BC_Formation_of_Ketone_Bodies_from_acetyl_CoA BC_Neuroregulin_receptor_degredation_protein_1_Controls_ErbB3_receptor_recycling BC_Role_of_Parkin_in_the_Ubiquitin_Proteasomal_Pathway BC_The_information_processing_pathway_at_the_IFN_beta_enhancer BC_mTOR_Signaling_Pathway GM_Eicosanoid_Synthesis GM_Gap_Junction_Proteins_Connexins_ GM_Matrix_Metalloproteinases GM_Nuclear_Receptors GM_Proteasome_Degradation GM_TGF_Beta_Signaling_Pathway GM_Wnt_signaling KG_Alkaloid_biosynthesis_II KG_Butanoate_metabolism KG_Citrate_cycle_TCA_cycle KG_One_carbon_pool_by_folate KG_Phenylalanine_tyrosine_and_tryptophan_biosynthesis KG_Reductive_carboxylate_cycle_CO2_fixation KG_Riboflavin_metabolism KG_Synthesis_and_degradation_of_ketone_bodies |