5.1. Medulloblastoma dataset

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Gene Name

classic

actin, beta

 

glyceraldehyde-3-phosphate dehydrogenase

 

H3 histone, family 3B (H3.3B)

 

ribosomal protein S26

 

ribosomal protein L37a

 

neuronatin

 

amino-terminal enhancer of split

 

GNAS complex locus

 

SH3-domain binding protein 2

 

zinc finger protein 33b (KOX 31)

 

beta 5-tubulin

 

solute carrier family 6 (neurotransmitter transporter, dopamine), member 3

desmoplastic

actin, beta

 

glyceraldehyde-3-phosphate dehydrogenase

 

ribosomal protein, large, P1

 

ribosomal protein S11

 

ribosomal protein S2

 

ribosomal protein L10

 

ribosomal protein L13a

 

ribosomal protein L18a

 

ribosomal protein L5

 

ribosomal protein L28

 

ribosomal protein L32

 

ribosomal protein L37a

 

ribosomal protein L3

 

ribosomal protein L4

 

ribosomal protein, large, P0

 

ribosomal protein L41

 

prothymosin, alpha (gene sequence 28)

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guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1

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5.2. Fibroblast dataset

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GENE NAME

cluster1

prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)

 

v-fos FBJ murine osteosarcoma viral oncogene homolog

 

myeloid cell leukemia sequence 1 (BCL2-related)

 

interleukin 8

 

nuclear receptor subfamily 4, group A, member 2

 

serum/glucocorticoid regulated kinase

 

tumor necrosis factor, alpha-induced protein 3

 

TGFB inducible early growth response

cluster2

CDC28 protein kinase regulatory subunit 2

 

MAD2 mitotic arrest deficient-like 1 (yeast)

 

mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)

 

ribonucleotide reductase M2 polypeptide

 

cyclin A2

 

cell division cycle 2, G1 to S and G2 to M

 

cyclin B1

 

flap structure-specific endonuclease 1

 

topoisomerase (DNA) II alpha 170kDa

 

centromere protein F, 350/400ka (mitosin)

 

TPX2, microtubule-associated protein homolog (Xenopus laevis)

 

antigen identified by monoclonal antibody Ki-67

 

cytoskeleton associated protein 1

 

UDP glycosyltransferase 2 family, polypeptide B7

 

nucleolar and spindle associated protein 1

 

cytoskeleton associated protein 2

cluster3

angiopoietin-like 2

 

prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)

 

v-fos FBJ murine osteosarcoma viral oncogene homolog

 

platelet-derived growth factor receptor, beta polypeptide

 

nuclear receptor subfamily 4, group A, member 2

 

core promoter element binding protein

 

protein phosphatase 4 (formerly X), catalytic subunit

 

cyclin L1

 

DKFZP564B167 protein

cluster4

chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)

 

GTP cyclohydrolase 1 (dopa-responsive dystonia)

 

mitochondrial ribosomal protein L35

 

prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)

 

Down syndrome critical region gene 1

 

transmembrane 4 superfamily member 1

 

tissue inhibitor of metalloproteinase 3 (Sorsby fundus dystrophy, pseudoinflammatory)

 

endothelial cell-specific molecule 1

 

myosin X

 

extra spindle poles like 1 (S. cerevisiae)

 

tissue factor pathway inhibitor 2

 

serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1

 

KIAA0186 gene product

 

hypothetical protein MGC20235

cluster5

prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)

 

regulator of G-protein signalling 4

 

interleukin 8

 

dual specificity phosphatase 6

 

fibroblast growth factor 2 (basic)

 

interleukin 1, beta

 

thrombomodulin

 

chemokine (C-C motif) ligand 2

 

tumor necrosis factor, alpha-induced protein 3

 

transmembrane, prostate androgen induced RNA

 

tissue factor pathway inhibitor 2

 

v-ets erythroblastosis virus E26 oncogene homolog 2 (avian)

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KIAA0157 protein

5.3 Mouse dataset

¡¡ Gene Name
Cluster1  Mus musculus coiled coil forming protein 1 (Cc1), mRNA
 Mus musculus similar to RIKEN cDNA 1700011J18 gene (1700011J18Rik), mRNA
 Mus musculus similar to CGI-83 protein (LOC212442), mRNA
 Mus musculus RIKEN cDNA 4930444P10 gene (4930444P10Rik), mRNA
 Mus musculus similar to polycystic kidney and hepatic disease 1 (LOC241035), mRNA
 Mus musculus similar to polycystic kidney and hepatic disease 1 (LOC241035), mRNA
 Mus musculus LOC241043 (LOC241043), mRNA
 Mus musculus LOC241044 (LOC241044), mRNA
 Mus musculus expressed sequence AI462175 (AI462175), mRNA
 Mus musculus LOC211012 (LOC211012), mRNA
 Mus musculus expressed sequence AI596398 (AI596398), mRNA
 Mus musculus LOC226991 (LOC226991), mRNA
 Mus musculus RIKEN cDNA 1700029F09 gene (1700029F09Rik), mRNA
 Mus musculus similar to hypothetical protein MGC5469 (LOC241061), mRNA
 Mus musculus LOC212730 (LOC212730), mRNA
 Mus musculus LOC212730 (LOC212730), mRNA
 Mus musculus similar to ALS2CR4 (LOC227156), mRNA
 Mus musculus LOC213653 (LOC213653), mRNA
 Mus musculus LOC227203 (LOC227203), mRNA
 Mus musculus LOC227208 (LOC227208), mRNA
Cluster2  Mus musculus LOC218575 (LOC218575), mRNA
 Mus musculus RIKEN cDNA 2810047L02 gene (2810047L02Rik), mRNA
 Mus musculus RIKEN cDNA 4930535E21 gene (4930535E21Rik), mRNA
 Mus musculus similar to RIKEN cDNA 4921522K05 (LOC211598), mRNA
 Mus musculus similar to KIAA1729 protein (LOC242950), mRNA
 Mus musculus similar to expressed sequence AI649009 (LOC231241), mRNA
 Mus musculus RIKEN cDNA 6720475M21 gene (6720475M21Rik), mRNA
 Mus musculus RIKEN cDNA 2610022G08 gene (2610022G08Rik), mRNA
 Mus musculus similar to phosphoinositol 3-phosphate-binding protein-2 (LOC210869), mRNA
 Mus musculus LOC235586 (LOC235586), mRNA
 Mus musculus calmodulin binding protein 1 (Calmbp1), mRNA
 Mus musculus similar to hypothetical protein, MGC:7531; clone MGC:7531 (LOC228131), mRNA
 Mus musculus LOC213408 (LOC213408), mRNA
 Mus musculus structure specific recognition protein 1 (Ssrp1), mRNA
 Mus musculus RIKEN cDNA 2310031L18 gene (2310031L18Rik), mRNA
 Mus musculus RIKEN cDNA 2010008E23 gene (2010008E23Rik), mRNA
 Mus musculus LOC234453 (LOC234453), mRNA
¡¡  Mus musculus LOC240944 (LOC240944), mRNA

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