ArrayXPath

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ArrayXPath has searched   #pathways #nodes (non-redundant) #nodes (redundant) GenMAPP 45 1391 1875 PharmGKB 9 134 180 KEGG 70 740 1788 BioCarta 346 1584 8969

ArrayXPath has identified 2565 (97.68%) out of 2626 input elements in the following pathways

Source # pathways # identified nodes # total nodes GenMAPP 45 775 766 PharmGKB 9 35 145 KEGG 69 503 1529 BioCarta 335 1098 5092

Set FDR cut off

Cluster 1 has 6 gene products

ArrayXPath has identified 4 out of 6 input elements in 4 out of 45 GenMAPP pathways.

Clusters GenMAPP 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA PharmGKB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA KEGG 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA BioCarta 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA

Pathway Identified node p-value q-value GenMapp//Hs_Peptide_GPCRs      1/69 (72) 0.1417 0.1100 GenMAPP//Hs_TGF_Beta_Signaling_Pathway      1/49 (57) 0.1021 0.1100 GenMAPP//Hs_Matrix_Metalloproteinases      1/28 (30) 0.0592 0.1380 GenMapp//Hs_GPCRs_Class_A_Rhodopsin-like      1/238 (292) 0.4307 0.2509

Cluster 2 has 37 gene products

ArrayXPath has identified 14 out of 37 input elements in 17 out of 45 GenMAPP pathways.

Clusters GenMAPP 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA PharmGKB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA KEGG 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA BioCarta 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA

Pathway Identified node p-value q-value GenMAPP//Hs_Ovarian_Infertility_Genes      2/29 (32) 0.0327 0.1900 GenMapp//Hs_Smal_ligand_GPCRs      1/16 (16) 0.1502 0.2554 GenMAPP//Hs_Blood_Clotting_Cascade      1/19 (22) 0.1759 0.2554 GenMAPP//Hs_Heme_Biosynthesis      1/9 (9) 0.0873 0.2554 GenMapp//Hs_GPCRs_Class_A_Rhodopsin-like_2      1/18 (20) 0.1674 0.2554 GenMAPP//Hs_Fatty_Acid_Synthesis      1/15 (15) 0.1414 0.2554 GenMAPP//Hs_S1P_Signaling      1/25 (25) 0.2252 0.2846 GenMAPP//Hs_G13_Signaling_Pathway      1/31 (32) 0.2717 0.2846 GenMapp//Hs_Inflammatory_Response_Pathway      1/29 (29) 0.2565 0.2846 GenMAPP//Hs_Apoptosis      1/34 (34) 0.2940 0.2846 GenMapp//Hs_GPCRs_Other      2/119 (171) 0.3398 0.2907 GenMAPP//Hs_Glycolysis_and_Gluconeogenesis      1/42 (44) 0.3503 0.2907 GenMAPP//Hs_Orphan_GPCRs      1/15 (16) 0.1414 0.3286 GenMapp//Hs_Peptide_GPCRs      3/69 (72) 0.0287 0.3333 GenMapp//Hs_Wnt_signaling      1/61 (61) 0.4679 0.3396 GenMapp//Hs_GPCRs_Class_A_Rhodopsin-like      3/238 (292) 0.4389 0.3396 GenMapp//Hs_Cell_Cycle      1/87 (96) 0.5969 0.4078

Cluster 3 has 32 gene products

ArrayXPath has identified 9 out of 32 input elements in 9 out of 45 GenMAPP pathways.

Clusters GenMAPP 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA PharmGKB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA KEGG 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA BioCarta 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA

Pathway Identified node p-value q-value GenMapp//Hs_Inflammatory_Response_Pathway      1/29 (29) 0.1732 0.1683 GenMapp//Hs_Gap_Junction_Proteins_Connexins      1/15 (15) 0.0932 0.1683 GenMAPP//Hs_MAPK_Cascade      1/24 (25) 0.1454 0.1683 GenMapp//Hs_Monoamine_GPCRs      1/33 (33) 0.1948 0.1683 GenMAPP//Hs_G13_Signaling_Pathway      1/31 (32) 0.1841 0.1683 GenMAPP//Hs_Eicosanoid_Synthesis      1/15 (19) 0.0932 0.1879 GenMapp//Hs_Wnt_signaling      2/61 (61) 0.0558 0.3377 GenMapp//Hs_GPCRs_Other      1/119 (171) 0.5539 0.4187 GenMapp//Hs_GPCRs_Class_A_Rhodopsin-like      1/238 (292) 0.8163 0.5485

Cluster 4 has 12 gene products

ArrayXPath has identified 7 out of 12 input elements in 9 out of 45 GenMAPP pathways.

Clusters GenMAPP 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA PharmGKB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA KEGG 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA BioCarta 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA

Pathway Identified node p-value q-value GenMapp//Hs_Proteasome_Degradation      1/35 (35) 0.1637 0.2384 GenMAPP//Hs_Apoptosis      1/34 (34) 0.1594 0.2384 GenMAPP//Hs_Translation_Factors      1/49 (51) 0.2224 0.2384 GenMAPP//Hs_TGF_Beta_Signaling_Pathway      1/49 (57) 0.2224 0.2384 GenMAPP//Hs_Fatty_Acid_Degradation      1/26 (26) 0.1240 0.2384 GenMapp//Hs_Cell_Cycle      1/87 (96) 0.3644 0.2929 GenMAPP//Hs_G_Protein_Signaling      1/77 (81) 0.3294 0.2929 GenMAPP//Hs_Electron_Transport_Chain      1/105 (105) 0.4234 0.3025 GenMAPP//Hs_MAPK_Cascade      1/24 (25) 0.1149 0.7391

Cluster 5 has 15 gene products

ArrayXPath has identified 7 out of 15 input elements in 6 out of 45 GenMAPP pathways.

Clusters GenMAPP 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA PharmGKB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA KEGG 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA BioCarta 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA

Pathway Identified node p-value q-value GenMAPP//Hs_Translation_Factors      2/49 (51) 0.0228 0.1020 GenMAPP//Hs_G_Protein_Signaling      1/77 (81) 0.3294 0.3157 GenMAPP//Hs_Electron_Transport_Chain      1/105 (105) 0.4234 0.3157 GenMapp//Hs_Proteasome_Degradation      1/35 (35) 0.1637 0.3157 GenMapp//Hs_Wnt_signaling      1/61 (61) 0.2699 0.3157 GenMapp//Hs_Cell_Cycle      1/87 (96) 0.3644 0.3157

Cluster 6 has 25 gene products

ArrayXPath has identified 10 out of 25 input elements in 9 out of 45 GenMAPP pathways.

Clusters GenMAPP 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA PharmGKB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA KEGG 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA BioCarta 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA

Pathway Identified node p-value q-value GenMAPP//Hs_Glycogen_Metabolism      2/33 (34) 0.0218 0.1367 GenMAPP//Hs_Translation_Factors      2/49 (51) 0.0457 0.1432 GenMapp//Hs_Peptide_GPCRs      2/69 (72) 0.0844 0.1763 GenMAPP//Hs_GPCRs_Class_B_Secretin_like      1/23 (28) 0.1540 0.2414 GenMAPP//Hs_G13_Signaling_Pathway      1/31 (32) 0.2024 0.2537 GenMAPP//Hs_Glycolysis_and_Gluconeogenesis      1/42 (44) 0.2648 0.2767 GenMapp//Hs_Wnt_signaling      1/61 (61) 0.3623 0.3245 GenMAPP//Hs_G_Protein_Signaling      1/77 (81) 0.4353 0.3411 GenMapp//Hs_GPCRs_Class_A_Rhodopsin-like      2/238 (292) 0.5315 0.3702

Cluster 7 has 22 gene products

ArrayXPath has identified 11 out of 22 input elements in 9 out of 45 GenMAPP pathways.

Clusters GenMAPP 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA PharmGKB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA KEGG 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA BioCarta 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA

Pathway Identified node p-value q-value GenMAPP//Hs_Catacholamine_Biosynthesis      1/4 (4) 0.0313 0.0775 GenMapp//Hs_Krebs-TCA_Cycle      2/31 (32) 0.0233 0.0775 GenMAPP//Hs_tRNA_Synthetases      2/21 (21) 0.0110 0.0817 GenMapp//Hs_Cell_Cycle      2/87 (96) 0.1474 0.2738 GenMapp//Hs_Ribosomal_Proteins      1/83 (83) 0.4930 0.4578 GenMAPP//Hs_TGF_Beta_Signaling_Pathway      1/49 (57) 0.3269 0.4578 GenMAPP//Hs_G_Protein_Signaling      1/77 (81) 0.4667 0.4578 GenMapp//Hs_Wnt_signaling      1/61 (61) 0.3905 0.4578 GenMAPP//Hs_Electron_Transport_Chain      1/105 (105) 0.5796 0.4784

Cluster 8 has 41 gene products

ArrayXPath has identified 21 out of 41 input elements in 15 out of 45 GenMAPP pathways.

Clusters GenMAPP 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA PharmGKB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA KEGG 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA BioCarta 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA

Pathway Identified node p-value q-value GenMapp//Hs_Nuclear_Receptors      2/37 (52) 0.0969 0.3320 GenMAPP//Hs_G13_Signaling_Pathway      2/31 (32) 0.0712 0.3320 GenMAPP//Hs_Matrix_Metalloproteinases      1/28 (30) 0.3360 0.3320 GenMAPP//Hs_G_Protein_Signaling      2/77 (81) 0.3048 0.3320 GenMAPP//Hs_Translation_Factors      2/49 (51) 0.1546 0.3320 GenMAPP//Hs_tRNA_Synthetases      1/21 (21) 0.2639 0.3320 GenMAPP//Hs_Fatty_Acid_Synthesis      1/15 (15) 0.1962 0.3320 GenMAPP//Hs_Blood_Clotting_Cascade      1/19 (22) 0.2419 0.3320 GenMAPP//Hs_Fatty_Acid_Degradation      1/26 (26) 0.3161 0.3320 GenMAPP//Hs_Nucleotide_Metabolism      1/15 (15) 0.1962 0.3553 GenMAPP//Hs_Electron_Transport_Chain      2/105 (105) 0.4532 0.3851 GenMAPP//Hs_Glycolysis_and_Gluconeogenesis      1/42 (44) 0.4607 0.3851 GenMapp//Hs_Krebs-TCA_Cycle      2/31 (32) 0.0712 0.3869 GenMapp//Hs_Ribosomal_Proteins      1/83 (83) 0.7104 0.5272 GenMapp//Hs_Cell_Cycle      1/87 (96) 0.7277 0.5272

Cluster 9 has 27 gene products

ArrayXPath has identified 8 out of 27 input elements in 8 out of 45 GenMAPP pathways.

Clusters GenMAPP 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA PharmGKB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA KEGG 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA BioCarta 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA

Pathway Identified node p-value q-value GenMAPP//Hs_Matrix_Metalloproteinases      1/28 (30) 0.1505 0.1814 GenMAPP//Hs_Fatty_Acid_Synthesis      1/15 (15) 0.0833 0.1814 GenMAPP//Hs_Glycogen_Metabolism      1/33 (34) 0.1752 0.1814 GenMapp//Hs_Proteasome_Degradation      1/35 (35) 0.1849 0.1814 GenMAPP//Hs_TGF_Beta_Signaling_Pathway      1/49 (57) 0.2500 0.2044 GenMapp//Hs_Cell_Cycle      1/87 (96) 0.4043 0.2834 GenMAPP//Hs_Electron_Transport_Chain      1/105 (105) 0.4672 0.2866 GenMAPP//Hs_Cholesterol_Biosynthesis      1/14 (14) 0.0779 0.3824

Cluster 10 has 39 gene products

ArrayXPath has identified 18 out of 39 input elements in 14 out of 45 GenMAPP pathways.

Clusters GenMAPP 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA PharmGKB 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 NA KEGG 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 8