Supplementary
Table 2. |
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Class
II: The genes that showed similar expression pattern at any sample time(s) at
both dose levels, |
but showed
dose-dependent expression at any other sample time(s) |
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Functional Classification |
Gene_ID |
Gene_Symbol |
Gene_Name |
GB_Accession |
Low |
High |
06h |
24h |
72h |
06h |
24h |
72h |
Amino
acid metabolism |
mCG9003.2 |
Arg1 |
arginase 1, liver |
BC050005 |
NC |
-1.8 |
NC |
NC |
-1.7 |
2.1 |
|
mCG13019.2 |
_ |
_ |
_ |
NC |
-1.8 |
NC |
NC |
-1.9 |
1.6 |
|
mCG1049304.1 |
_ |
_ |
_ |
-1.7 |
2.3 |
NC |
-1.9 |
NC |
NC |
Carbohydrate metabolism |
mCG123128.1 |
Idh1 |
isocitrate dehydrogenase 1 (NADP+), soluble |
AK087063 |
NC |
3.6 |
NC |
NC |
2.7 |
-4.5 |
Cell adhesion |
mCG18022.3 |
Emid2 |
EMI domain containing 2 |
AJ416092 |
2.8 |
NC |
-2.1 |
2.8 |
NC |
NC |
Cell cycle |
mCG11117.2 |
Anapc5 |
anaphase-promoting complex subunit 5 |
BC046804 |
NC |
12.3 |
NC |
NC |
9.3 |
-6.0 |
|
mCG3701.2 |
Cul4a |
cullin 4A |
BC024113 |
NC |
2.3 |
1.5 |
NC |
1.8 |
-1.9 |
Cell structure and motility |
mCG21072.1 |
Dncl2a |
dynein, cytoplasmic, light chain 2A |
AK002359 |
NC |
-1.6 |
NC |
NC |
-1.6 |
1.6 |
|
mCG9780.1 |
Capza1 |
capping protein (actin filament) muscle Z-line, alpha 1 |
BC016232 |
NC |
1.7 |
1.9 |
NC |
1.7 |
-3.3 |
|
mCG118463.1 |
Spnb2 |
spectrin beta 2 |
AF017112 |
NC |
3.7 |
NC |
NC |
3.0 |
-3.3 |
|
mCG140870 |
_ |
_ |
BC043327 |
1.8 |
NC |
NC |
1.8 |
NC |
-1.8 |
Developmental processes |
mCG1463.3 |
Mbtd1 |
mbt domain containing 1 |
BC020018 |
NC |
4.3 |
NC |
NC |
2.9 |
-4.9 |
|
mCG8300.3 |
Nrf1 |
nuclear respiratory factor 1 |
AK014494 |
NC |
3.1 |
NC |
NC |
2.8 |
-2.8 |
|
mCG114540.2 |
Odz3 |
odd Oz/ten-m homolog 3 (Drosophila) |
AK031268 |
NC |
-1.6 |
NC |
NC |
-1.6 |
1.9 |
|
mCG18542.2 |
Sox17 |
SRY-box containing gene 17 |
AK076707 |
-1.5 |
2.8 |
NC |
NC |
2.0 |
NC |
Electron
transport |
mCG124890.1 |
Ndufa2 |
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2 |
BC006815 |
NC |
-1.8 |
NC |
NC |
-1.8 |
1.8 |
|
mCG17301.2 |
1500040F11Rik |
RIKEN cDNA 1500040F11 gene |
AK002389 |
NC |
-2.0 |
NC |
NC |
-1.9 |
2.0 |
|
mCG10028.3 |
_ |
_ |
BC059730 |
NC |
-1.6 |
NC |
NC |
-1.8 |
1.4 |
Immunity
and defense |
mCG5142.3 |
Lta4h |
leukotriene A4 hydrolase |
AK005161 |
NC |
1.9 |
NC |
NC |
2.0 |
-5.1 |
|
mCG123914.1 |
Hspa9a |
heat shock protein, A |
BC057343 |
NC |
3.4 |
NC |
NC |
2.5 |
-4.1 |
|
mCG12225 |
H2-D4 |
histocompatibility 2, D region locus 4 |
X52914 |
NC |
3.4 |
NC |
NC |
3.9 |
-8.1 |
Lipid, fatty acid and steroid
metabolism |
mCG4201 |
Cyp2d26 |
cytochrome P450, family 2, subfamily d, polypeptide 26 |
AK004915 |
NC |
1.9 |
NC |
NC |
1.8 |
-2.3 |
|
mCG131749.1 |
Scd1 |
stearoyl-Coenzyme A desaturase 1 |
BC007474 |
-2.3 |
2.6 |
2.4 |
NC |
NC |
-2.0 |
|
mCG9087.1 |
Pla2g2e |
phospholipase A2, group IIE |
BC027524 |
1.8 |
-2.6 |
NC |
1.7 |
NC |
NC |
|
mCG10954.2 |
_ |
_ |
BC026417 |
NC |
4.5 |
NC |
NC |
4.1 |
-3.0 |
Nucleoside, nucleotide and
nucleic acid metabolism |
mCG16382.1 |
Adk |
adenosine kinase |
BC009659 |
NC |
2.6 |
NC |
NC |
2.3 |
-2.7 |
|
mCG21716.1 |
Ahcyl1 |
S-adenosylhomocysteine hydrolase-like 1 |
BC018218 |
NC |
7.9 |
NC |
NC |
6.3 |
-3.4 |
|
mCG123064.1 |
H3f3a |
H3 histone, family 3A |
BC012687 |
2.1 |
-4.8 |
NC |
NC |
NC |
3.0 |
|
mCG8539.1 |
Ivns1abp |
influenza virus NS1A binding protein |
AK007291 |
NC |
5.4 |
NC |
NC |
4.4 |
-4.3 |
|
mCG12127.1 |
Lsm7 |
LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) |
BC027511 |
NC |
-2.3 |
NC |
NC |
-2.3 |
1.9 |
|
mCG2296.1 |
Msl31 |
male-specific lethal-3 homolog 1 (Drosophila) |
BC010226 |
NC |
2.2 |
1.6 |
NC |
2.1 |
-4.8 |
|
mCG6479 |
Plag1 |
pleiomorphic adenoma gene 1 |
AF057366 |
NC |
NC |
1.9 |
-1.9 |
NC |
1.5 |
|
mCG19537.2 |
Rad21 |
RAD21 homolog (S. pombe) |
BC043032 |
-1.2 |
2.0 |
NC |
NC |
2.0 |
NC |
|
mCG19872.3 |
Rnf13 |
ring finger protein 13 |
BC058182 |
-1.5 |
2.0 |
NC |
NC |
1.8 |
NC |
|
mCG6936.3 |
Snrpe |
small nuclear ribonucleoprotein E |
BC008262 |
NC |
-2.0 |
NC |
NC |
-1.8 |
2.4 |
|
mCG20941.2 |
Tert |
telomerase reverse transcriptase |
AF073311 |
-2.8 |
5.0 |
NC |
NC |
2.3 |
NC |
|
mCG14717.2 |
1700022N24Rik |
RIKEN cDNA 1700022N24 gene |
BC014812 |
NC |
3.0 |
NC |
NC |
3.6 |
-2.5 |
|
mCG20880.1 |
_ |
_ |
BC062267 |
NC |
-1.7 |
NC |
NC |
-1.5 |
1.6 |
|
mCG19887.2 |
_ |
_ |
BC055889.1 |
NC |
2.7 |
NC |
NC |
2.6 |
-2.8 |
Protein metabolism and modification |
mCG3701.2 |
Cul4a |
cullin 4A |
BC024113 |
NC |
2.3 |
1.5 |
NC |
1.8 |
-1.9 |
|
mCG5274.2 |
Enpep |
glutamyl aminopeptidase |
AK128975 |
NC |
-2.1 |
NC |
NC |
-2.2 |
2.3 |
|
mCG126848 |
Ide |
insulin degrading enzyme |
BC041675 |
NC |
4.3 |
NC |
NC |
3.2 |
-3.4 |
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mCG130909.1 |
Mrpl23 |
mitochondrial ribosomal protein L23 |
AK086805 |
NC |
-2.0 |
NC |
NC |
-1.9 |
1.7 |
|
mCG141640 |
Pcsk9 |
proprotein convertase subtilisin/kexin type 9 |
BC038085 |
NC |
5.8 |
NC |
NC |
7.7 |
-7.2 |
|
mCG132460.1 |
Raf1 |
v-raf-1 leukemia viral oncogene 1 |
BC015273 |
NC |
6.3 |
NC |
NC |
4.9 |
-7.4 |
|
mCG121646.1 |
Rpl21 |
ribosomal protein L21 |
AK008457 |
NC |
-1.7 |
NC |
NC |
-1.7 |
1.5 |
|
mCG4898.2 |
Rpl30 |
ribosomal protein L30 |
BC002060 |
NC |
-1.5 |
NC |
NC |
-1.5 |
1.9 |
|
mCG115063.1 |
Rpl36a |
ribosomal protein L36a |
BC027515 |
NC |
-1.6 |
NC |
NC |
-1.4 |
1.9 |
|
mCG23116.2 |
Uba52 |
ubiquitin A-52 residue ribosomal protein fusion product 1 |
BC054413 |
NC |
-1.6 |
NC |
NC |
-1.4 |
1.5 |
|
mCG19768.2 |
Uchl5 |
ubiquitin carboxyl-terminal esterase L5 |
BC006891 |
NC |
-1.7 |
NC |
NC |
-1.7 |
1.7 |
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mCG123291.1 |
_ |
_ |
AL732599 |
NC |
-1.8 |
NC |
NC |
-1.6 |
1.4 |
|
mCG3335.2 |
_ |
_ |
BC031891 |
NC |
3.2 |
NC |
NC |
2.7 |
-2.3 |
Protein targeting and
localization |
mCG113371.1 |
_ |
_ |
AK013352 |
NC |
3.6 |
NC |
NC |
4.4 |
-4.3 |
Signal transduction |
mCG11764.2 |
Efemp2 |
epidermal growth factor-containing
fibulin-like extracellular matrix protein 2 |
AF109122 |
NC |
2.7 |
-1.7 |
NC |
NC |
-2.9 |
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mCG22568.2 |
Pkp3 |
plakophilin 3 |
BC032045 |
NC |
2.2 |
NC |
-2.8 |
NC |
2.1 |
|
mCG3250.1 |
Bgn |
biglycan |
AK086920 |
NC |
4.5 |
NC |
NC |
5.0 |
-4.9 |
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mCG21485.1 |
Klra2 |
killer cell lectin-like receptor, subfamily A, member 2 |
BC064711 |
-2.2 |
NC |
-1.6 |
NC |
1.9 |
-2.3 |
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mCG21707.2 |
Lepr |
leptin receptor |
U49106 |
-2.6 |
NC |
2.5 |
-2.1 |
NC |
NC |
Transport |
mCG4123.1 |
Slc37a2 |
solute carrier family 37 (glycerol-3-phosphate transporter), member 2 |
BC063326 |
-1.5 |
NC |
NC |
-2.2 |
1.8 |
NC |
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mCG6958.1 |
Atp7b |
ATPase, Cu++ transporting, beta polypeptide |
U38477 |
NC |
1.9 |
NC |
NC |
2.1 |
-2.7 |
|
mCG125165 |
Atp8b1 |
ATPase, class I, type 8B, member 1 |
AY506548 |
-4.2 |
5.0 |
NC |
NC |
4.5 |
NC |
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mCG16992.2 |
Slc17a1 |
solute carrier family 17 (sodium phosphate), member 1 |
BC013445 |
NC |
NC |
1.8 |
NC |
3.5 |
-2.0 |
Biological process
unclassified |
mCG6620.2 |
Atp5h |
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d |
_ |
NC |
-1.8 |
NC |
NC |
-1.8 |
1.6 |
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mCG1549.2 |
Atp5l |
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g |
Y17223 |
NC |
-2.0 |
NC |
NC |
-2.1 |
2.1 |
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mCG128765.1 |
Cggbp1 |
CGG triplet repeat binding protein 1 |
AK086053 |
-3.3 |
5.1 |
NC |
NC |
3.8 |
NC |
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mCG16994.2 |
Cmah |
cytidine monophospho-N-acetylneuraminic acid hydroxylase |
BC055079 |
NC |
5.4 |
NC |
NC |
4.2 |
-3.4 |
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mCG142308 |
Commd3 |
COMM domain containing 3 |
BC048815 |
NC |
-1.5 |
NC |
NC |
-1.5 |
1.4 |
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mCG17362.1 |
Deb1 |
differentially expressed in B16F10 1 |
BC027548 |
NC |
-1.8 |
NC |
NC |
-1.5 |
1.8 |
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NM_008495.1 |
Lgals1 |
lectin, galactose binding, soluble 1 |
AK004298 |
NC |
-1.8 |
NC |
NC |
-1.7 |
2.6 |
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mCG22337.2 |
Lrp11 |
low density lipoprotein receptor-related protein 11 |
BC059874 |
NC |
2.0 |
NC |
NC |
4.2 |
-1.7 |
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mCG9656.2 |
Mmrp19 |
monocyte macrophage 19 |
AB028863 |
NC |
-1.7 |
NC |
NC |
-1.9 |
1.8 |
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mCG19723.1 |
Mrpl17 |
mitochondrial ribosomal protein L17 |
AK007438 |
NC |
-1.8 |
NC |
NC |
-1.5 |
1.7 |
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mCG5958.1 |
Mrps16 |
mitochondrial ribosomal protein S16 |
BC024656 |
NC |
-2.1 |
NC |
NC |
-2.0 |
1.5 |
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mCG140303 |
Mrps28 |
mitochondrial ribosomal protein S28 |
BC028530 |
NC |
-1.9 |
NC |
NC |
-1.8 |
1.5 |
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mCG116118.1 |
Mrps36 |
mitochondrial ribosomal protein S36 |
AK007512 |
NC |
-1.9 |
NC |
NC |
-2.2 |
1.9 |
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mCG142200 |
Mrps6 |
mitochondrial ribosomal protein S6 |
BC027271 |
NC |
-1.6 |
NC |
NC |
-1.7 |
1.5 |
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NM_147020.1 |
Olfr1061;Olfr1515 |
olfactory receptor 1061;olfactory receptor 1515 |
AY073068 |
-1.6 |
NC |
NC |
NC |
NC |
1.9 |
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mCG130546.1 |
Rpl41 |
ribosomal protein L41 |
AK012487 |
NC |
-2.0 |
NC |
NC |
-1.7 |
2.2 |
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mCG23586.1 |
Rpp21 |
ribonuclease P 21kDa subunit (human) |
AY251016 |
NC |
-2.0 |
NC |
NC |
-1.5 |
1.8 |
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mCG116158.1 |
Serf1 |
small EDRK-rich factor 1 |
AF073517 |
NC |
-3.0 |
NC |
NC |
-2.4 |
2.2 |
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mCG122050.1 |
Tbca |
tubulin cofactor a |
U05333 |
NC |
-2.0 |
NC |
NC |
-1.8 |
1.9 |
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mCG4735.2 |
Tloc1 |
translocation protein 1 |
AK088093 |
NC |
-1.7 |
NC |
NC |
-1.5 |
1.6 |
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mCG5717.1 |
Tomm7 |
translocase of outer mitochondrial membrane 7 homolog (yeast) |
BC055352 |
NC |
-2.6 |
NC |
NC |
-2.3 |
2.0 |
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mCG3895.1 |
BC028768 |
cDNA sequence BC028768 |
BC028768 |
NC |
-2.0 |
NC |
NC |
-2.0 |
1.6 |
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mCG1027811.2 |
5830457H20 |
hypothetical protein 5830457H20 |
AK036681 |
-1.7 |
3.2 |
NC |
NC |
3.1 |
NC |
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mCG22422.2 |
1110025L05Rik |
RIKEN cDNA 1110025L05 gene |
BC061197 |
NC |
-2.6 |
NC |
NC |
-2.0 |
1.7 |
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mCG21188.2 |
1110030J09Rik |
RIKEN cDNA 1110030J09 gene |
BC025057 |
NC |
-1.5 |
NC |
NC |
-1.3 |
1.9 |
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mCG19146.1 |
1110057H19Rik |
RIKEN cDNA 1110057H19 gene |
BC021512 |
NC |
-1.8 |
NC |
NC |
-1.8 |
1.6 |
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mCG19223 |
1190005P17Rik |
RIKEN cDNA 1190005P17 gene |
BC024098 |
NC |
-1.6 |
NC |
NC |
-1.4 |
1.7 |
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mCG13563.2 |
1190017O12Rik |
RIKEN cDNA 1190017O12 gene |
BC005668 |
NC |
-1.9 |
NC |
NC |
-1.9 |
2.2 |
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mCG145663 |
1500015L24Rik |
RIKEN cDNA 1500015L24 gene |
AK005254 |
-1.7 |
NC |
1.5 |
NC |
2.6 |
NC |
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mCG114279.1 |
1600022A19Rik |
RIKEN cDNA 1600022A19 gene |
BC031486 |
NC |
3.1 |
NC |
NC |
2.7 |
-7.7 |
|
mCG1045669.1 |
1810037I17Rik |
RIKEN cDNA 1810037I17 gene |
BC002135 |
NC |
-2.2 |
NC |
NC |
-1.7 |
1.9 |
|
mCG122056.1 |
2010009L17Rik |
RIKEN cDNA 2010009L17 gene |
AY500995 |
NC |
4.5 |
2.4 |
NC |
3.3 |
-2.0 |
|
mCG4066.1 |
2010200O16Rik |
RIKEN cDNA 2010200O16 gene |
BC050932 |
-1.5 |
1.9 |
NC |
NC |
1.9 |
NC |
|
mCG11529.2 |
2510038A11Rik |
RIKEN cDNA 2510038A11 gene |
BC050115 |
NC |
-2.2 |
NC |
NC |
-2.2 |
1.7 |
|
mCG23299.2 |
5530601I19Rik |
RIKEN cDNA 5530601I19 gene |
AK017460 |
NC |
1.9 |
NC |
-1.6 |
2.1 |
NC |
|
NM_176932.2 |
6430510M02Rik |
RIKEN cDNA 6430510M02 gene |
AY380798 |
1.8 |
NC |
NC |
1.6 |
-2.5 |
NC |
|
mCG3895.1 |
BC028768 |
cDNA sequence BC028768 |
BC028768 |
NC |
-2.0 |
NC |
NC |
-2.0 |
1.6 |
|
mCG21203.3 |
BC052066 |
cDNA sequence BC052066 |
BC023782 |
NC |
2.9 |
NC |
NC |
3.2 |
-4.1 |
|
mCG50986.1 |
C730025P13Rik |
RIKEN cDNA C730025P13 gene |
BC022606 |
NC |
NC |
-1.7 |
NC |
-1.9 |
1.5 |
¡¡ |
mCG131623.1 |
F630045L20Rik |
RIKEN cDNA F630045L20 gene |
AY236527 |
2.1 |
NC |
-3.1 |
1.7 |
NC |
NC |
*;
fold change to control mean value |
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NC; no change |
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