Methylene dianiline (MDA)

　

　

　

1. Experimental Design  

 

Array: Applied Biosystems AB1700 mouse chip (33315 probes) 

30 arrays in total with triple biological replicates

　

2. Data

2.1. Raw data

Name Files
mda_high_06hr_1  
mda_high_06hr_2  
mda_high_06hr_3  
mda_high_24hr_1  
mda_high_24hr_2  
mda_high_24hr_3  
mda_high_72hr_1  
mda_high_72hr_2  
mda_high_72hr_3  
mda_low_06hr_1  
mda_low_06hr_2  
mda_low_06hr_3  
mda_low_24hr_1  
mda_low_24hr_2  
mda_low_24hr_3  
mda_low_72hr_1  
mda_low_72hr_2  
mda_low_72hr_3  
mda_nontreat_na_1  
mda_nontreat_na_2  
mda_nontreat_na_3  
mda_vehicle_06hr_1  
mda_vehicle_06hr_2  
mda_vehicle_06hr_3  
mda_vehicle_24hr_1  
mda_vehicle_24hr_2  
mda_vehicle_24hr_3  
mda_vehicle_72hr_1  
mda_vehicle_72hr_2  
mda_vehicle_72hr_3  

　

2.2. Normalized data

    Download normalized data (33315 probes x 30 samples)

    Data are normalized in following procedure.

  1. Assay Normalized Signals are used.
  2. Only probes with Flag < 100 are used.
  3. Missing and filtered valued are imputed with KNN imputation algorithm.
  4. Values are VSN transformed.
  5. Arrays are scaled with quantile normalization.
  6. Normalized valued are rescaled with

　

3.  Supplementary Tables 1-4

　


　

　

Last updated: 2007-02-06