Project : Pipelining Microarray data analysis


Overview 
Goal
Tools
Timeline
Workflow



Overview

      Microarray measures the simultaneous expression levels of tens of thousands of genes in a given cell type.
    Such data can yield significant insights into the underlying biology of the cell. We achieve this by comprehensive
    and step-by-step procedures.



Goal

    The goal of this project is to create a high-throughput platform for microarray data analysis.
    This work includes:
            Develop algorithms for removing systemtic effiects
            Develop algorithms for supervised analysis
            Develop algorithms for unsupervised analysis
            Develop algorithms for recognizing patterns
            Develop algorithms for visualization
            Create software package for the above purposes



Tools(s/w)

Task Software or 
Development language
interface HTML/Javascript/Perl
analysis engine R statistical package
mining engine C, Java
visualization engine SVG

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Timeline



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Workflow

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