Project : Pipelining Microarray data analysis


•Overview 
•Goal
•Tools
•Timeline
•Workflow



Overview

      Microarray measures the simultaneous expression levels of tens of thousands of genes in a given cell type.
    Such data can yield significant insights into the underlying biology of the cell. We achieve this by comprehensive
    and step-by-step procedures.



Goal

    The goal of this project is to create a high-throughput platform for microarray data analysis.
    This work includes:
            • Develop algorithms for removing systemtic effiects
            • Develop algorithms for supervised analysis
            • Develop algorithms for unsupervised analysis
            • Develop algorithms for recognizing patterns
            • Develop algorithms for visualization
            • Create software package for the above purposes



Tools(s/w)

Task Software or 
Development language
interface HTML/Javascript/Perl
analysis engine R statistical package
mining engine C, Java
visualization engine SVG

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Timeline



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Workflow

 

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