Program at a Glance

Saturday, Oct. 15, 2016

  Tutorial I: Translational Bioinformatics (Regency Ballroom)

  • 2:00PM ~ 4:00PM: A Protein-Domain Approach for Analysis of Disease Mutations
                                                                Maricel G. Kann (U. of Maryland Baltimore County)
  • 4:00PM ~ 6:00PM: Computational methods for precision medicine and single subject studies with genomes and transcriptomes.
                                                                Yves A. Lussier, Colleen Kenost and QIke Li (U. of Arizona)
  Tutorial II: Machine Learning Methods for Translational Bioinformatics (Terrace Ballroom)
  • 2:00PM ~ 6:00PM: Machine Learning in Bioinformatics and Translational Disease Network Analysis
                                                                Helen Hyunjung Shin (Ajou University)

Sunday, Oct. 16, 2016

 

Regency Ballroom

Terrace Ballroom

08:00-09:30

Registration  

09:30-10:00

Opening TBC 2016 

10:00-10:50

Keynote I: Data storage and sharing in SCRUM-Japan: a nation-wide cancer genome screening project for drug development
Katsuya Tsuchihara, National Cancer Center Japan
 

Session

S1. Multi-Omic Application
Chair: Kyung-Ah Sohn(Ajou Univ.)

S2. Disease Genomics
Chair: Jung Kyoon Choi (KAIST)

11:00-11:25

S1-1 N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes
Qike Li

S2-1 Knowledge-driven binning approach for rare variant association analysis: Application to neuroimaging biomarkers in Alzheimer's disease
Dokyoon Kim

11:25-11:50

S1-2 An Inference Method from Multi-Layered Structure of Omics
Myungjun Kim

S2-2 Genotype Based Disease Similarity Matrix from Uniqueness of Shared Genes
Hui Lu

11:50-12:15

S1-3 Identification of interactions between miRNA and DNA methylation associated with gene expression as potential prognostic markers in bladder cancer
Manu Shivakumar

S2-3 Association analysis of rare variants near the APOE region with CSF and neuroimaging biomarkers of Alzheimer's disease

Kwangsik Nho

12:15-13:10

Lunch  

13:10-14:00

Keynote II: Significant Pattern Mining for Biomedical Applications
Koji Tsuda, U. of Tokyo
 

Session

S3. Cancer Bioinformatics
Chair: Dongsup Kim (KAIST)

S4. Bio/Medical Data Mining
Chair: Nigam Shah (Stanford Univ.)

14:00-14:25

S3-1 Prediction of Recurrent Regulatory Mutations in Noncoding Cancer Genomes

Jung Kyoon Choi

S4-1 Disease Causality Extraction based on Lexical Semantics and Clause Frequency from Biomedical Literature
Dong-Gi Lee

14:25-14:50

S3-2 Identifying subtype-specific gene expressions explained by DNA methylation patterns in breast cancer
Garam Lee

S4-2 ICU Event Prediction by integrating Sequential Patterns as Classification Features

Shameek Ghosh

14:50-15:15

S3-3 Racial differences of intron retention and DNA methylation in breast cancer subtypes
Younghee Lee

S4-3 Quad-phased Data Mining Modeling for Dementia Diagnosis
Sunjoo Bang

15:15-15:40

S3-4 Identification of clinically relevant genes from mRNA and splicing changes of skin cutaneous melanoma
Ji Yeon Park

S4-4 Medical Concepts Embedding


Ting Chen

15:40-16:10

Coffee Break 

16:10-17:00

Keynote III: Single cell genome analysis for precision cancer medicine
Woong Yang Park, Samsung Medical Center
 

17:00-18:00

Keynote IV: Evolution vs Disease: From Big Data and Text Mining to Personalized Genomics
Olivier Lichtarge, Baylor College of Medicine
 

18:00-

Dinner Beach Party  


Monday, Oct. 17, 2016  

 

Regency Ballroom

Terrace Ballroom

09:00-10:00

Keynote V: Deploying Genomics and Immunology for Risk Assessment and Prevention
Olufunmilayo I. Olopade, U. of Chicago
 

Session

H1. Highlight Research Tracks
Chair: Hyun Goo Woo (Ajou Univ.)

S5. Network Biology and Medicine
Chair: Younghee Lee (Univ. of Utah)

10:00-10:25

H1-1 Reproducibility in large in vitro drug screening: where do we stand?

Benjamin Haibe-Kains

S5-1 Integrative Information Theoretic Network Analysis for GWAS of Aspirin Exacerbated Respiratory Disease in Korean Population
Kyung-Ah Sohn

10:25-10:50

H1-2 ISOexpresso: a web-based platform for isoform-level expression analysis in human cancer

Sangwoo Kim

S5-2 Taking promoters out of enhancers in sequence based predictions of tissue-specific mammalian enhancers
Bartek Wilczynski

10:50-11:15

H1-3 Uncovering synthetic lethal interactions for therapeutic targets and predictive markers in lung adenocarcinoma
Grace S. Shieh

S5-3 Modeling Long-Term Human Activeness Using Recurrent Neural Networks for Biometric Data

Ho-Jin Choi

11:15-11:40

H1-4 Public health monitoring of drug interactions, patient cohorts, and behavioral outcomes via network analysis of Instagram and Twitter user timelines
Luis Rocha

S5-4 Cascade Recurrent Deep Networks for Audible Range Prediction


Yonghyun Nam

11:40-13:00

Lunch  

13:00-14:00

Keynote VI: Medical data and text mining: Linking diseases, drugs, and adverse reactions
Lars Juhl Jensen, U. of Copenhagen
 

Session

S6. PharmacoGenomic Application
Chair: Indira Ghosh (Jawaharlal Nehru Univ.)

S7. Linking Phenotypes
Chair: Sangwoo Kim (Yonsei Univ.)

14:00-14:25

S6-1 Tissue specificity of in vitro drug sensitivity

Benjamin Haibe-Kains

S7-1 An integrative approach for analyzing host factors during tuberculosis infection
Indira Ghosh

14:25-14:50

S6-2 Genome Sequence Variability Predicts Pharmaceutical Withdrawals/Precautions from the Market
Kye Hwa Lee

S7-2 A meta-analysis of gene expression profiles to discover obesity signatures in peripheral blood mononuclear cells
Gwan-Su Yi

14:50-15:15

S6-3 Network Mirroring for Drug Repositioning

Sunghong Park

S7-3 SEXCMD : Development of Sex Determination Markers for next-generation sequencing data
Seongmun Jeong

15:15-15:45

Coffee Break 

15:45-16:45

Keynote VII: Integrative genomics analyses unveil downstream biological effectors of disease-specific polymorphisms buried in intergenic regions
Yves A. Lussier, U. of Arizona
 

16:45-17:45

Keynote VIII: Using Electronic Health Records for Translational Science and Better Patient Care
Nigam Shah, Stanford University
 

17:45-18:00

Closing Ceremony  



  Floor Plan


  Terrace & Regency Ballroom