Auditorium I

Auditorium II

8:30~9:00AM

Registration and TBC2011 Announcement 

9:00~11:00AM
 

11:00~12:00AM

 Tutorial 1: Introduction to Translational Bioinformatics
                        Atul Butte (Stanford Univ.) and Yves Lussier (U. of Chicago)

 Tutorial 2: How to give a talk with the best presentation skills
                        Maricel Kann (Univ. Maryland, Baltimore County)
                                                                                           Chair: Sun Kim (Seoul Nat. Univ.)

12:00~1:00PM

Lunch Box Seminar, Auditorium II
Application of New Genetic Analysis Technology
Sujin Kim (DNA Link)

1:00~ 1:00PM

Opening  
Hune Cho (Chair of the KOSMI Boards, Korean Society of Medical Informatics)
Sanghyuk Lee (President, Korean Society for Bioinformatics and Systems Biology)
Ju Han Kim (TBC 2011 Organizing Committee Chair)

1:00~ 2:00PM

Keynote I: Network and State Space Models: Science and Science
                Fiction Approaches to Cell Fate Predictions
John Quackenbush (Harvard Univ., Dana Faber Cancer Institute)
                                                                          Chair: Young Jo Lee (Seoul Nat. Univ.)  

Session

S1 Bio/medical Data Mining                       Chair: Daehee Hwang (POSTECH)

S2 Semantic Biology/Medicine and
     Biologoical Ontologies
                         Chair: Wankyu Kim (Ewah Univ.)

2:00~ 2:25PM

S1-1 Efficient Mining of Interesting Patterns in Large Biological Sequences (Genomics and Informatics)
                                             Mamunur Rashid

S2-1 Facilitating Clinical Research Using Natural Language Processing of Chinese Narrative Operation Notes
                                                          Lei Liu

2:25~ 2:50PM

S1-2  Identifying Disease-Associated Pathological Attributes by Combining Data Classification and Literature Mining
                                                    Docyong Kim

S2-2 Semantic Signature: Comparative Interpretation of Gene Expression Microarray Data on a Semantic Space
                                                       Jihun Kim

2:50~ 3:15PM

S1-3 Liver Cirrhosis Prediction from Serum Markers using Multiobjective Evolutionary Algorithms
                                                 Soo-Yong Shin

S2-3 DAO : Disease Associated Ontology
                                                    Rama Kaalia

3:15~ 3:40PM

S1-4 Efficient Approach for Mining Maximal Contiguous Frequent Patterns from Large DNA Sequence Database (Genomics and Informatics)
                                                  Rezaul Karim

S2-4 Bi-directional Measure of Semantic Similarity for Gene Ontology (published in JAMIA)

                                      Sang Jay Bien

3:40~ 4:00PM

Coffee Break

4:00~ 5:00PM
 

5:00~ 6:00PM

Keynote II: Linking Genetic Variants to the Universe of Biological Data
William Bush (Vanderbilt University)

Keynote III: Personalizing Care through Pattern Recognition in Genomic and Health Records: Opportunities Ahead
Lucila Ohno-Machado (UC San Diego)
                                                                               Chair: Taesung Park (Seoul Nat. Univ.) 

Welcoming Party, Dinner at Garden View, CRI 11th FL.

Auditorium I

Auditorium II

8:30~9:00AM

Registration and TBC2011 Announcement 

9:00~10:00AM

10:00~11:00AM

Keynote IV: Exploring Systems and Personalized Medicine through
                  Translational Bioinformatics
Atul Butte (Stanford Univ.)

 Keynote V: Clinical Bioinformatics in Development of Biomarkers
Xiangdong Wang (Fudan University)
                                                                               Chair: Sangsoo Kim (Soongsil Univ.)

11:00~11:20AM

Coffee Break

11:11:11

TBC 11.11.11.Nov.11.2011 'The Full Bit' Surprise
There will be a draw for iPod nano, iPad2, and Galaxy Tab 

Session

S3 Human Genome and Disease                       Chair: Raewoong Park (Ajou Univ.)

S4 Functional Genomics/Structural Modeling                  Chair: Kwang-Hwi Cho (Soongsil Univ.)

11:20~11:45AM

S3-1 Incorporating Molecular and Functional Context into the Prioritization of Human Variants Associated with Cancer and Non-cancer Diseases (published in JAMIA)
                                                    Maricel Kann

S4-1 Development of Predictive QSAR Model and Its Application in the Discovery of Human Leukotriene A4 Hydrolase Inhibitors
                                Venkatesh Arulalapperumal

11:45~12:10AM

S3-2 Mechanisms Concordance between Mendelian and Complex Inheritance of Alzheimer¡¯s Genes For Predicting Unique Personal Genome Variants (published in JAMIA)
                                                Yves A. Lussier

S4-2 3D QSAR Analysis of Novel Chymase Inhibitors against Cardiovascular and Allergic diseases: A Density Functional Theory and Docking Study
                                                    Mahreen Arooj

12:10~12:35PM

S3-3 The link between Recent Parkinson's Disease Diagnoses and Bipolar Disorder Diagnoses in an Aging Population in the United States
                                                Sean D. Mooney

S4-3 Analysis of Putative miRNA Function Using a Novel Approach, GAPPS-miRTarGE
                                                   Sun Shim Choi

12:35~ 1:00PM

S3-4 A Comparison of Cataloged Variation between International HapMap Consortium and 1000 Genomes Project (published in JAMIA)
                                     Carrie Buchanan

S4-4 Intra-relation Reconstruction from Inter-relation: miRNA to Gene Expression
                                                     Dokyoon Kim

1:00~ 2:00PM

Lunch Box Seminar, Auditorium II
Exome Sequencing: The Rising Star in Medical Genetics
Hwan seok Rhee (Macrogen)

2:00~ 3:00PM

 Keynote VI: Phenotype-Genotype Associations in DNA Biobanks Linked to Electronic Medical Records
Marylyn D. Ritchie (Pennsylvania State University)
                                                                                  Chair: Ji Wan Park (Hallym Univ.)

3:00~ 3:10PM

Coffee Break

Session

S5 Functional Genomics and Disease                                    Chair: Doheon Lee (KAIST)

S6 Drug and Biomarker Discovery
     Chair: Keun Woo Lee (Gyeongsang Nat. Univ.)

3:10~ 3:35PM

S5-1 Early and Pathogen-independent detection methods for Microbial Infection Using Gene-expression Profiling of Host Responses
                                                     Yu Rang Park

S6-1 Identifying candidate disease genes of gastric cancer by differential protein-protein interactions (published in JAMIA)
                                                      Luonan Chen

3:35~ 4:00PM

S5-2 Discovering Depression-Associated Nutrient Factors Through Pathological Evidence Inference
                                              Yee-Ok Kang

S6-2 Structure-based Pharmacophore Modeling and Molecular Dynamics Simulations Approaches to Design Potent Inhibitor for Interleukin-2-inducible T-cell Kinase
                               Meganathan Chandrasekaran

4:00~ 4:25PM

S5-3 Multiplex Meta-Analysis of RNA Expression to Identify Genes With Variants Associated with Immune Dysfunction (published in JAMIA)
                                    Alexander Morgan

S6-3 Incorporating Functional and Molecular Context for Uncovering Drug-Gene Relationships from the Biomedical Literature
                                                     Maricel Kann

4:25~4:50PM

S5-4 Breast Cancer Survivability Prediction with Surveillance, Epidemiology, and End Results Database
                                                     Hyunjung Shin

S6-4 Molecular Dynamics Simulations of Sonic Hedgehog-Receptor and Inhibitor Complexes and Their Applications for Potential Anticancer Agent Discovery
                                                            Siu Kim

5:00~ 6:00PM

 Keynote VII: Knowledge Enhancement through Intra-relation, Inter-relation, and Integration of Different Levels of Genomic Data
Hyunjung (Helen) Shin (Ajou University)
                                                                                  Chair: Ju Han Kim (Seoul Nat. Univ.) 

Closing
Prize award ceremony
There will be a draw for iPad2, Galaxy Tab, iPod nano